Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001673

Physical Location & Seq

Genomic Coordinates Reverse (-)

41386672 .. 41388193

Gene Structure 1522 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1337800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGAACAATCCGGAAAATGCTTTGCTTGCGCTTAACTACTTTCAGCAGAGGTTGAAACCGAAGCGGGAGGTGATTTTGGATAATGTGACTTTGAAAGTGTGTAGGAAGGGTAAGGATATGGAGAGAGCAGAGAAGCTGTTCGACGAAATACTTCAGAGAGGTGTTAACCCCGATAATGTTACCTTTTCGACTATGATTAGTTGCTCTTTGATGTGTTCTTTGCTTGATAAGGCTGTGGAGTGGTTTGAGAAGATTCCCGGTTTTGGGTGTAATCCGGATGATGTTACCTATTCGGCTATGATTGACGCCTATGGACGTGTGGGTAAGGTAGAAATGGCTTTCAGTTTGTATGACCGGGCCAGGACTGAGAAGCGGCGCATTGATCCAGTGACGTTTTCTACGTTCATCAAAATTCACGGGCAATCGGGGAATTTTGATGGGTGCTTGAATGTTTATGAGGAACTGAAAGCTATAGGGGCTAAGCCAAACTTGGTTATTTATAACACTTTGTTGGATGCTATGGGAAGAGCTAGGAGACCTTGGCAGGCCAAGAAAATTTACCGACAGATGATAAGCAAGGAGCTTTCACCAAATTGGGTAACCTATGCAACTCTTTTAAGGGCCTATGGTATAGCTCGTTACTGTGATGATGCTCTTAATGTTTATAAAGAGATGAAGGAAAAGGGATTGGAGTTAAATCTTGTGAATTGCATTGAGAGGGCTGATGAAAAACTAGGGTATGTGTTAAAACTTTTAGTGGAGAAGCAAGAAAGTAGTGAAAAGTTCAACAACGAAGATTCACAACTTTTTAACTCGATTGGTTCGGATGTAAAGAAGGCTTACTCCAATTGCCTGATTGATCTTTGTGTGAACCTCAATCTCTTGGAGAGAGCCTGTGAGCTACTAGACTTGGGGATCACACTTCAGATATATATAGGCTTACAGTCAAGGTCGCAGACCCAGTGGTCTTTGTATCTCAATGGCCTCTCTCTTGGGGCAGCTCTGACTGCATTACATGTTTGGATTAATGACCTATCTCGGGTATTGGAATCCGGTGAGGAGCTTCTGCCGTTGCTTGGAATTAATACTGGATATGGGAAATATAAGTATTCAGACAAAGGTCTGGCGGGTGTATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031425 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

380

Amino Acids

42.98

Weight (kDa)

7.42

Isoelectric Point (pI)

28.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	34 - 67	2.7e-08	PPR repeat family
PPR_1	PF12854	89 - 119	1.6e-07	PPR repeat
PPR_2	PF13041	92 - 137	1.3e-08	PPR repeat family
PPR	PF01535	95 - 119	1.5e-06	PPR repeat
PPR_long	PF17177	102 - 233	6.7e-09	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	162 - 209	3.9e-11	PPR repeat family
PPR_3	PF13812	185 - 234	2.3e-06	Pentatricopeptide repeat domain
PPR	PF01535	200 - 230	4.6e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16390
fragaria_vesca	FvH4_3g00440 FvH4_3g00470
malus_domestica	MD00G1221000.v1.1 MD05G1360400.v1.1 MD08G1234300.v1.1 MD10G1337400.v1.1 MD10G1337800.v1.1 MD10G1338000.v1.1
prunus_persica	Prupe.3G138500_v2.0.a1 Prupe.4G005200_v2.0.a1
pyrus_communis	pycom05g32720 pycom10g28680 pycom10g28700 pycom10g28720 pycom10g28750
rosa_chinensis	RchiOBHm_Chr1g0364151 RchiOBHm_Chr2g0155431 RchiOBHm_Chr4g0402181 RchiOBHm_Chr5g0000631 RchiOBHm_Chr6g0271321
rosa_laevigata	RLG00000004254 RLG00000013858 RLG00000028931 RLG00000030883
rosa_multiflora	Rmu_co8004710.1_g000001 Rmu_co8021096.1_g000001 Rmu_co8161794.1_g000001 Rmu_sc0000795.1_g000110 Rmu_sc0001141.1_g000016 Rmu_sc0003662.1_g000007 Rmu_sc0003699.1_g000009 Rmu_sc0006695.1_g000081 Rmu_sc0010255.1_g000007 Rmu_sc0011992.1_g000014 Rmu_sc0016929.1_g000002 Rmu_sc0017523.1_g000008 Rmu_sc0021532.1_g000001 Rmu_sc0029877.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001310 Rroxscaffold_1G00075570 Rroxscaffold_4G00324290
rosa_rugosa	Rorug04G0385500 Rorug07G0309300.1
rosa_samantha	Rh5AG005400 Rh5BG007000 Rh5CG005700 Rh5DG005600
rosa_wichuraiana	Rw5G000530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	501, 666
AasI	GACNNNNNNGTC	1 cut(s)	964
AccIII	TCCGGA	2 cut(s)	10, 274
AciI	CCGC	3 cut(s)	64, 373, 1127
AclWI	GGATC	2 cut(s)	377, 923
AcsI	RAATTY	3 cut(s)	411, 430, 555
AcuI	CTGAAG	2 cut(s)	137, 908
AcyI	GRCGYC	1 cut(s)	306
AfiI	CCNNNNNNNGG	4 cut(s)	263, 264, 1039, 1076
AflIII	ACRYGT	2 cut(s)	316, 1015
AgsI	TTSAA	4 cut(s)	55, 94, 448, 787
AjiI	CACGTC	1 cut(s)	317
AjnI	CCWGG	1 cut(s)	359
AluBI	AGCT	8 cut(s)	136, 470, 530, 583, 635, 901, 1001, 1063
AluI	AGCT	8 cut(s)	136, 470, 530, 583, 635, 901, 1001, 1063
Alw26I	GTCTC	1 cut(s)	529
AlwI	GGATC	2 cut(s)	377, 923
Ama87I	CYCGRG	1 cut(s)	1038
Aor13HI	TCCGGA	2 cut(s)	10, 274
AoxI	GGCC	4 cut(s)	357, 546, 621, 982
ApeKI	GCWGC	1 cut(s)	998
ApoI	RAATTY	3 cut(s)	411, 430, 555
AseI	ATTAAT	2 cut(s)	1026, 1083
Asp700I	GAANNNNTTC	2 cut(s)	137, 150
AspLEI	GCGC	2 cut(s)	31, 378
AspS9I	GGNCC	2 cut(s)	357, 621
AsuC2I	CCSGG	2 cut(s)	258, 356
AsuHPI	GGTGA	3 cut(s)	82, 579, 1067
AvaI	CYCGRG	1 cut(s)	1038
BbvI	GCAGC	1 cut(s)	1010
BccI	CCATC	1 cut(s)	431
BceAI	ACGGC	1 cut(s)	1054
BciT130I	CCWGG	1 cut(s)	361
BcnI	CCSGG	2 cut(s)	258, 356
BcoDI	GTCTC	1 cut(s)	529
BfaI	CTAG	3 cut(s)	531, 734, 905
BfmI	CTRYAG	1 cut(s)	471
BisI	GCNGC	2 cut(s)	374, 999
BlpI	GCTNAGC	1 cut(s)	480
BlsI	GCNGC	2 cut(s)	375, 1000
Bme1390I	CCNGG	3 cut(s)	258, 356, 361
BmeT110I	CYCGRG	1 cut(s)	1038
BmgBI	CACGTC	1 cut(s)	317
BmgT120I	GGNCC	2 cut(s)	357, 621
BmrFI	CCNGG	3 cut(s)	258, 356, 361
BmrI	ACTGGG	1 cut(s)	955
BmsI	GCATC	2 cut(s)	505, 640
BmuI	ACTGGG	1 cut(s)	955
BoxI	GACNNNNGTC	1 cut(s)	1119
Bpu1102I	GCTNAGC	1 cut(s)	480
BpuMI	CCSGG	2 cut(s)	258, 356
BsaHI	GRCGYC	1 cut(s)	306
BsaI	GGTCTC	1 cut(s)	529
BsaJI	CCNNGG	1 cut(s)	539
BsaWI	WCCGGW	3 cut(s)	10, 274, 1052
Bsc4I	CCNNNNNNNGG	4 cut(s)	263, 264, 1039, 1076
Bse1I	ACTGG	3 cut(s)	386, 961, 1093
BseAI	TCCGGA	2 cut(s)	10, 274
BseBI	CCWGG	1 cut(s)	361
BseDI	CCNNGG	1 cut(s)	539
BseGI	GGATG	3 cut(s)	283, 520, 832
BseLI	CCNNNNNNNGG	4 cut(s)	263, 264, 1039, 1076
BseMII	CTCAG	1 cut(s)	357
BseNI	ACTGG	3 cut(s)	386, 961, 1093
BseRI	GAGGAG	1 cut(s)	1073
BseXI	GCAGC	1 cut(s)	1010
BshFI	GGCC	4 cut(s)	359, 548, 623, 984
BsiHKCI	CYCGRG	1 cut(s)	1038
BsiSI	CCGG	5 cut(s)	11, 258, 275, 355, 1053
BslI	CCNNNNNNNGG	4 cut(s)	263, 264, 1039, 1076
BsmAI	GTCTC	1 cut(s)	529
BsnI	GGCC	4 cut(s)	359, 548, 623, 984
Bso31I	GGTCTC	1 cut(s)	529
BsoBI	CYCGRG	1 cut(s)	1038
Bsp13I	TCCGGA	2 cut(s)	10, 274
Bsp143I	GATC	3 cut(s)	382, 859, 915
Bsp1720I	GCTNAGC	1 cut(s)	480
BspACI	CCGC	3 cut(s)	64, 373, 1127
BspANI	GGCC	4 cut(s)	359, 548, 623, 984
BspCNI	CTCAG	1 cut(s)	358
BspEI	TCCGGA	2 cut(s)	10, 274
BspPI	GGATC	2 cut(s)	377, 923
BspQI	GCTCTTC	1 cut(s)	520
BspTNI	GGTCTC	1 cut(s)	529
BsrI	ACTGG	3 cut(s)	386, 961, 1093
BssECI	CCNNGG	1 cut(s)	539
BssMI	GATC	3 cut(s)	382, 859, 915
BssNI	GRCGYC	1 cut(s)	306
BssT1I	CCWWGG	1 cut(s)	539
Bst2UI	CCWGG	1 cut(s)	361
Bst4CI	ACNGT	2 cut(s)	644, 945
Bst6I	CTCTTC	1 cut(s)	520
BstACI	GRCGYC	1 cut(s)	306
BstC8I	GCNNGC	2 cut(s)	27, 546
BstDEI	CTNAG	2 cut(s)	366, 480
BstEII	GGTNACC	1 cut(s)	598
BstF5I	GGATG	3 cut(s)	283, 520, 832
BstHHI	GCGC	2 cut(s)	31, 378
BstKTI	GATC	3 cut(s)	385, 862, 918
BstMAI	GTCTC	1 cut(s)	529
BstMBI	GATC	3 cut(s)	382, 859, 915
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 476, 1007
BstNI	CCWGG	1 cut(s)	361
BstNSI	RCATGY	1 cut(s)	1019
BstPAI	GACNNNNGTC	1 cut(s)	1119
BstPI	GGTNACC	1 cut(s)	598
BstSCI	CCNGG	3 cut(s)	256, 354, 359
BstSFI	CTRYAG	1 cut(s)	471
BstV1I	GCAGC	1 cut(s)	1010
BsuRI	GGCC	4 cut(s)	359, 548, 623, 984
BtrI	CACGTC	1 cut(s)	317
BtsCI	GGATG	3 cut(s)	283, 520, 832
BtsIMutI	CAGTG	2 cut(s)	393, 968
Cac8I	GCNNGC	2 cut(s)	27, 546
CfoI	GCGC	2 cut(s)	31, 378
Cfr13I	GGNCC	2 cut(s)	357, 621
CseI	GACGC	1 cut(s)	314
CviAII	CATG	1 cut(s)	1016
DdeI	CTNAG	2 cut(s)	366, 480
DpnI	GATC	3 cut(s)	384, 861, 917
DpnII	GATC	3 cut(s)	382, 859, 915
DrdI	GACNNNNNNGTC	1 cut(s)	964
DseDI	GACNNNNNNGTC	1 cut(s)	964
Eam1104I	CTCTTC	1 cut(s)	520
EarI	CTCTTC	1 cut(s)	520
Eco130I	CCWWGG	1 cut(s)	539
Eco31I	GGTCTC	1 cut(s)	529
Eco57I	CTGAAG	2 cut(s)	137, 908
Eco88I	CYCGRG	1 cut(s)	1038
Eco91I	GGTNACC	1 cut(s)	598
EcoO109I	RGGNCCY	1 cut(s)	621
EcoO65I	GGTNACC	1 cut(s)	598
EcoRII	CCWGG	1 cut(s)	359
EcoT14I	CCWWGG	1 cut(s)	539
ErhI	CCWWGG	1 cut(s)	539
FaeI	CATG	1 cut(s)	1019
FalI	AAGNNNNNCTT	2 cut(s)	473, 505
FatI	CATG	1 cut(s)	1015
FauI	CCCGC	2 cut(s)	57, 1120
Fnu4HI	GCNGC	2 cut(s)	374, 999
FokI	GGATG	3 cut(s)	290, 527, 839
Fsp4HI	GCNGC	2 cut(s)	374, 999
FspBI	CTAG	3 cut(s)	531, 734, 905
GlaI	GCGC	2 cut(s)	30, 377
GluI	GCNGC	2 cut(s)	374, 999
HaeIII	GGCC	4 cut(s)	359, 548, 623, 984
HapII	CCGG	5 cut(s)	11, 258, 275, 355, 1053
HgaI	GACGC	1 cut(s)	314
HhaI	GCGC	2 cut(s)	31, 378
Hin1I	GRCGYC	1 cut(s)	306
Hin1II	CATG	1 cut(s)	1019
Hin6I	GCGC	2 cut(s)	29, 376
HinP1I	GCGC	2 cut(s)	29, 376
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HinfI	GANTC	3 cut(s)	253, 797, 1049
HpaI	GTTAAC	1 cut(s)	166
HpaII	CCGG	5 cut(s)	11, 258, 275, 355, 1053
HphI	GGTGA	3 cut(s)	82, 579, 1067
Hpy166II	GTNNAC	2 cut(s)	166, 871
Hpy188I	TCNGA	5 cut(s)	156, 826, 927, 1005, 1114
Hpy188III	TCNNGA	2 cut(s)	11, 275
Hpy8I	GTNNAC	2 cut(s)	166, 871
Hpy99I	CGWCG	1 cut(s)	146
HpyAV	CCTTC	3 cut(s)	100, 670, 829
HpyCH4III	ACNGT	2 cut(s)	644, 945
HpyCH4IV	ACGT	3 cut(s)	316, 392, 401
HpyCH4V	TGCA	3 cut(s)	608, 711, 1010
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 476, 1007
HpyF3I	CTNAG	2 cut(s)	366, 480
HpySE526I	ACGT	3 cut(s)	316, 392, 401
Hsp92I	GRCGYC	1 cut(s)	306
Hsp92II	CATG	1 cut(s)	1019
HspAI	GCGC	2 cut(s)	29, 376
Kpn2I	TCCGGA	2 cut(s)	10, 274
KspAI	GTTAAC	1 cut(s)	166
Kzo9I	GATC	3 cut(s)	382, 859, 915
LguI	GCTCTTC	1 cut(s)	520
LmnI	GCTCC	2 cut(s)	580, 1060
Lsp1109I	GCAGC	1 cut(s)	1010
LweI	GCATC	2 cut(s)	505, 640
MaeI	CTAG	3 cut(s)	531, 734, 905
MaeII	ACGT	3 cut(s)	316, 392, 401
MaeIII	GTNAC	6 cut(s)	85, 178, 283, 388, 598, 638
MalI	GATC	3 cut(s)	384, 861, 917
MboI	GATC	3 cut(s)	382, 859, 915
MboII	GAAGA	3 cut(s)	262, 537, 806
MfeI	CAATTG	1 cut(s)	847
MluCI	AATT	7 cut(s)	411, 430, 555, 592, 706, 847, 1080
MmeI	TCCRAC	1 cut(s)	492
MnlI	CCTC	8 cut(s)	42, 61, 152, 451, 711, 884, 995, 1051
MroI	TCCGGA	2 cut(s)	10, 274
MroXI	GAANNNNTTC	2 cut(s)	137, 150
MseI	TTAA	9 cut(s)	33, 165, 617, 657, 695, 746, 810, 1026, 1083
MspI	CCGG	5 cut(s)	11, 258, 275, 355, 1053
MspR9I	CCNGG	3 cut(s)	258, 356, 361
MunI	CAATTG	1 cut(s)	847
MvaI	CCWGG	1 cut(s)	361
MwoI	GCNNNNNNNGC	3 cut(s)	26, 476, 1007
NciI	CCSGG	2 cut(s)	258, 356
NdeII	GATC	3 cut(s)	382, 859, 915
NlaIII	CATG	1 cut(s)	1019
NmuCI	GTSAC	2 cut(s)	85, 388
NspI	RCATGY	1 cut(s)	1019
PciI	ACATGT	1 cut(s)	1015
PciSI	GCTCTTC	1 cut(s)	520
PcsI	WCGNNNNNNNCGW	1 cut(s)	398
PdmI	GAANNNNTTC	2 cut(s)	137, 150
PfeI	GAWTC	3 cut(s)	253, 797, 1049
PkrI	GCNGC	2 cut(s)	375, 1000
PscI	ACATGT	1 cut(s)	1015
PshAI	GACNNNNGTC	1 cut(s)	1119
PshBI	ATTAAT	2 cut(s)	1026, 1083
PsiI	TTATAA	2 cut(s)	501, 666
Psp6I	CCWGG	1 cut(s)	359
PspEI	GGTNACC	1 cut(s)	598
PspGI	CCWGG	1 cut(s)	359
PspPI	GGNCC	2 cut(s)	357, 621
SapI	GCTCTTC	1 cut(s)	520
SaqAI	TTAA	9 cut(s)	33, 165, 617, 657, 695, 746, 810, 1026, 1083
SatI	GCNGC	2 cut(s)	374, 999
Sau3AI	GATC	3 cut(s)	382, 859, 915
Sau96I	GGNCC	2 cut(s)	357, 621
ScrFI	CCNGG	3 cut(s)	258, 356, 361
SfaNI	GCATC	2 cut(s)	505, 640
SfcI	CTRYAG	1 cut(s)	471
Sse9I	AATT	7 cut(s)	411, 430, 555, 592, 706, 847, 1080
SsiI	CCGC	3 cut(s)	64, 373, 1127
SspMI	CTAG	3 cut(s)	531, 734, 905
StyD4I	CCNGG	3 cut(s)	256, 354, 359
StyI	CCWWGG	1 cut(s)	539
TaaI	ACNGT	2 cut(s)	644, 945
TaiI	ACGT	3 cut(s)	319, 395, 404
TaqI	TCGA	3 cut(s)	141, 188, 815
TasI	AATT	7 cut(s)	411, 430, 555, 592, 706, 847, 1080
TauI	GCSGC	1 cut(s)	376
TfiI	GAWTC	3 cut(s)	253, 797, 1049
Tru1I	TTAA	9 cut(s)	33, 165, 617, 657, 695, 746, 810, 1026, 1083
Tru9I	TTAA	9 cut(s)	33, 165, 617, 657, 695, 746, 810, 1026, 1083
TscAI	CASTG	2 cut(s)	393, 968
TseFI	GTSAC	2 cut(s)	85, 388
TseI	GCWGC	1 cut(s)	998
Tsp45I	GTSAC	2 cut(s)	85, 388
TspDTI	ATGAA	4 cut(s)	17, 394, 689, 741
TspRI	CASTG	2 cut(s)	393, 968
VspI	ATTAAT	2 cut(s)	1026, 1083
XapI	RAATTY	3 cut(s)	411, 430, 555
XceI	RCATGY	1 cut(s)	1019
XmnI	GAANNNNTTC	2 cut(s)	137, 150
XspI	CTAG	3 cut(s)	531, 734, 905

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.