Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8021096.1

Orthogroup ID

OG0001673

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 366

Gene Structure 365 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8021096.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 365 bp

atgatgactatatattcctgtagtgggaaagtctcggaggcaaggagaacgttgaatgagatgatggaagctggtttccagcttaatatccttattttgatatcactaatacaattctatgggaaggccaagcgtactgatgatgttgtcgaggcattcaatcaactacaacaattgggcataactccagatgagcatttctgtggttatctcctgaatgtgatgactcaaacaccaaagggtgaactacctgagttgaatgattgcattaagcgtggtaatgagaagcttggatatgttgtaagacctctggtagggaagcaagacagtagtcaaaacttcaggaaggaagcatcagaactttt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031425 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

121

Amino Acids

13.71

Weight (kDa)

5.83

Isoelectric Point (pI)

36.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16390
fragaria_vesca	FvH4_3g00440 FvH4_3g00470
malus_domestica	MD00G1221000.v1.1 MD05G1360400.v1.1 MD08G1234300.v1.1 MD10G1337400.v1.1 MD10G1337800.v1.1 MD10G1338000.v1.1
prunus_persica	Prupe.3G138500_v2.0.a1 Prupe.4G005200_v2.0.a1
pyrus_communis	pycom05g32720 pycom10g28680 pycom10g28700 pycom10g28720 pycom10g28750
rosa_chinensis	RchiOBHm_Chr1g0364151 RchiOBHm_Chr2g0155431 RchiOBHm_Chr4g0402181 RchiOBHm_Chr5g0000631 RchiOBHm_Chr6g0271321
rosa_laevigata	RLG00000004254 RLG00000013858 RLG00000028931 RLG00000030883
rosa_multiflora	Rmu_co8004710.1_g000001 Rmu_co8021096.1_g000001 Rmu_co8161794.1_g000001 Rmu_sc0000795.1_g000110 Rmu_sc0001141.1_g000016 Rmu_sc0003662.1_g000007 Rmu_sc0003699.1_g000009 Rmu_sc0006695.1_g000081 Rmu_sc0010255.1_g000007 Rmu_sc0011992.1_g000014 Rmu_sc0016929.1_g000002 Rmu_sc0017523.1_g000008 Rmu_sc0021532.1_g000001 Rmu_sc0029877.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001310 Rroxscaffold_1G00075570 Rroxscaffold_4G00324290
rosa_rugosa	Rorug04G0385500 Rorug07G0309300.1
rosa_samantha	Rh5AG005400 Rh5BG007000 Rh5CG005700 Rh5DG005600
rosa_wichuraiana	Rw5G000530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	50
AcuI	CTGAAG	1 cut(s)	325
AfaI	GTAC	1 cut(s)	136
AfiI	CCNNNNNNNGG	2 cut(s)	24, 314
AgsI	TTSAA	3 cut(s)	55, 160, 259
AluBI	AGCT	3 cut(s)	71, 82, 289
AluI	AGCT	3 cut(s)	71, 82, 289
Alw26I	GTCTC	1 cut(s)	37
AoxI	GGCC	1 cut(s)	126
AsuHPI	GGTGA	1 cut(s)	254
BccI	CCATC	1 cut(s)	58
BcoDI	GTCTC	1 cut(s)	37
BfmI	CTRYAG	1 cut(s)	19
BoxI	GACNNNNGTC	1 cut(s)	330
BpmI	CTGGAG	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	2 cut(s)	24, 314
BseLI	CCNNNNNNNGG	2 cut(s)	24, 314
BseMII	CTCAG	1 cut(s)	243
BshFI	GGCC	1 cut(s)	128
BslI	CCNNNNNNNGG	2 cut(s)	24, 314
BsmAI	GTCTC	1 cut(s)	37
BsmI	GAATGC	1 cut(s)	155
BsnI	GGCC	1 cut(s)	128
BspANI	GGCC	1 cut(s)	128
BspCNI	CTCAG	1 cut(s)	244
Bst4CI	ACNGT	1 cut(s)	329
BstDEI	CTNAG	1 cut(s)	252
BstENI	CCTNNNNNAGG	1 cut(s)	312
BstMAI	GTCTC	1 cut(s)	37
BstPAI	GACNNNNGTC	1 cut(s)	330
BstSFI	CTRYAG	1 cut(s)	19
BsuRI	GGCC	1 cut(s)	128
Csp6I	GTAC	1 cut(s)	135
CviJI	RGCY	4 cut(s)	71, 82, 128, 289
CviKI_1	RGCY	4 cut(s)	71, 82, 128, 289
CviQI	GTAC	1 cut(s)	135
DdeI	CTNAG	1 cut(s)	252
Eco32I	GATATC	1 cut(s)	102
Eco57I	CTGAAG	1 cut(s)	325
EcoNI	CCTNNNNNAGG	1 cut(s)	312
EcoRV	GATATC	1 cut(s)	102
FaiI	YATR	5 cut(s)	11, 13, 120, 182, 297
GsuI	CTGGAG	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	128
HindIII	AAGCTT	1 cut(s)	287
HinfI	GANTC	1 cut(s)	226
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	1 cut(s)	245
Hpy188I	TCNGA	2 cut(s)	37, 358
Hpy188III	TCNNGA	3 cut(s)	188, 214, 343
Hpy8I	GTNNAC	1 cut(s)	245
HpyAV	CCTTC	2 cut(s)	118, 340
HpyCH4III	ACNGT	1 cut(s)	329
HpyCH4IV	ACGT	1 cut(s)	50
HpyCH4V	TGCA	1 cut(s)	267
HpyF3I	CTNAG	1 cut(s)	252
HpySE526I	ACGT	1 cut(s)	50
LpnPI	CCDG	8 cut(s)	31, 57, 92, 201, 227, 264, 296, 328
MaeII	ACGT	1 cut(s)	50
MfeI	CAATTG	1 cut(s)	173
MluCI	AATT	2 cut(s)	113, 173
MlyI	GAGTC	1 cut(s)	220
MnlI	CCTC	3 cut(s)	31, 145, 318
MseI	TTAA	2 cut(s)	84, 270
MslI	CAYNNNNRTG	1 cut(s)	201
MunI	CAATTG	1 cut(s)	173
Mva1269I	GAATGC	1 cut(s)	155
PctI	GAATGC	1 cut(s)	155
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
PshAI	GACNNNNGTC	1 cut(s)	330
Psp1406I	AACGTT	1 cut(s)	50
RsaI	GTAC	1 cut(s)	136
RsaNI	GTAC	1 cut(s)	135
RseI	CAYNNNNRTG	1 cut(s)	201
SaqAI	TTAA	2 cut(s)	84, 270
SchI	GAGTC	1 cut(s)	220
SetI	ASST	6 cut(s)	53, 73, 84, 253, 291, 310
SfcI	CTRYAG	1 cut(s)	19
SmiMI	CAYNNNNRTG	1 cut(s)	201
Sse9I	AATT	2 cut(s)	113, 173
TaaI	ACNGT	1 cut(s)	329
TaiI	ACGT	1 cut(s)	53
TaqI	TCGA	1 cut(s)	150
TasI	AATT	2 cut(s)	113, 173
Tru1I	TTAA	2 cut(s)	84, 270
Tru9I	TTAA	2 cut(s)	84, 270
XagI	CCTNNNNNAGG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.