Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001673

Physical Location & Seq

Genomic Coordinates Reverse (-)

41396440 .. 41397057

Gene Structure 618 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1338000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGAAAGCTATAGGGGCTAAGCCAAACTTGGTTATTTATAACACTTTGTTGGATGCTATGGGAAGAGCTAGGAGGCCTTGGCAGGCCAAGAAAATTTACCGAGAGATGATCAGCAATGAGCTTTCACCAAATTGGGAAAAGGGACTGGAGTTAAATGTAATTCTCCATAACACCCATTTACCTATGTGTGCTGATGTTGGTTACACCGACGAAGCCGTTGAGATTTTTGAAGAAATGAAGAGTTCTGAAACATTGAAGCCTGACAGTTGGACCTTTTCGTTCATGATTACCATATATTCTTGTAGCGGGAAAGTCATAGAGGCAGAAGCAACATTGAATGAGATGTTGGAAGCTGGTTTCGAGCCGAATATCTTTATTTTGACATCACTCATCCAATGCTACGGTAAGGCAAAACGCATTGATGACGTTGTCAAAATATTCAATCAACTCCTAGAATTGGGAATAACACCCGATGAGCGTTTCTGTGGTTATCTCTTGAATGTGATGACCCAAACACCAAAGGAAGAACTTTGCAAGAACTTTGCAAGCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006417 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031425 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

185

Amino Acids

20.93

Weight (kDa)

5.06

Isoelectric Point (pI)

25.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	8 - 45	8.3e-07	PPR repeat family
PPR_3	PF13812	47 - 99	7.6e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	52 - 97	2.7e-06	PPR repeat family
PPR_long	PF17177	66 - 175	6.7e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	122 - 159	3.2e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16390
fragaria_vesca	FvH4_3g00440 FvH4_3g00470
malus_domestica	MD00G1221000.v1.1 MD05G1360400.v1.1 MD08G1234300.v1.1 MD10G1337400.v1.1 MD10G1337800.v1.1 MD10G1338000.v1.1
prunus_persica	Prupe.3G138500_v2.0.a1 Prupe.4G005200_v2.0.a1
pyrus_communis	pycom05g32720 pycom10g28680 pycom10g28700 pycom10g28720 pycom10g28750
rosa_chinensis	RchiOBHm_Chr1g0364151 RchiOBHm_Chr2g0155431 RchiOBHm_Chr4g0402181 RchiOBHm_Chr5g0000631 RchiOBHm_Chr6g0271321
rosa_laevigata	RLG00000004254 RLG00000013858 RLG00000028931 RLG00000030883
rosa_multiflora	Rmu_co8004710.1_g000001 Rmu_co8021096.1_g000001 Rmu_co8161794.1_g000001 Rmu_sc0000795.1_g000110 Rmu_sc0001141.1_g000016 Rmu_sc0003662.1_g000007 Rmu_sc0003699.1_g000009 Rmu_sc0006695.1_g000081 Rmu_sc0010255.1_g000007 Rmu_sc0011992.1_g000014 Rmu_sc0016929.1_g000002 Rmu_sc0017523.1_g000008 Rmu_sc0021532.1_g000001 Rmu_sc0029877.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001310 Rroxscaffold_1G00075570 Rroxscaffold_4G00324290
rosa_rugosa	Rorug04G0385500 Rorug07G0309300.1
rosa_samantha	Rh5AG005400 Rh5BG007000 Rh5CG005700 Rh5DG005600
rosa_wichuraiana	Rw5G000530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	39
AciI	CCGC	1 cut(s)	306
AcsI	RAATTY	1 cut(s)	93
AfiI	CCNNNNNNNGG	1 cut(s)	457
AgsI	TTSAA	5 cut(s)	230, 256, 337, 442, 499
AjuI	GAANNNNNNNTTGG	2 cut(s)	329, 361
AluBI	AGCT	5 cut(s)	8, 68, 121, 353, 549
AluI	AGCT	5 cut(s)	8, 68, 121, 353, 549
AoxI	GGCC	2 cut(s)	74, 84
ApoI	RAATTY	1 cut(s)	93
AspS9I	GGNCC	1 cut(s)	270
AsuHPI	GGTGA	1 cut(s)	117
AvaII	GGWCC	1 cut(s)	270
BceAI	ACGGC	1 cut(s)	200
BclI	TGATCA	1 cut(s)	108
BfaI	CTAG	2 cut(s)	69, 452
BfmI	CTRYAG	1 cut(s)	9
BlpI	GCTNAGC	1 cut(s)	18
Bme18I	GGWCC	1 cut(s)	270
BmgT120I	GGNCC	1 cut(s)	270
BmsI	GCATC	1 cut(s)	43
BpmI	CTGGAG	1 cut(s)	167
Bpu1102I	GCTNAGC	1 cut(s)	18
BsaJI	CCNNGG	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	1 cut(s)	457
Bse1I	ACTGG	1 cut(s)	150
Bse3DI	GCAATG	1 cut(s)	121
BseDI	CCNNGG	1 cut(s)	77
BseGI	GGATG	2 cut(s)	58, 390
BseLI	CCNNNNNNNGG	1 cut(s)	457
BseMI	GCAATG	1 cut(s)	121
BseNI	ACTGG	1 cut(s)	150
BshFI	GGCC	2 cut(s)	76, 86
BslFI	GGGAC	1 cut(s)	156
BslI	CCNNNNNNNGG	1 cut(s)	457
BsmFI	GGGAC	1 cut(s)	156
BsnI	GGCC	2 cut(s)	76, 86
Bsp143I	GATC	1 cut(s)	108
Bsp1720I	GCTNAGC	1 cut(s)	18
BspACI	CCGC	1 cut(s)	306
BspANI	GGCC	2 cut(s)	76, 86
BspHI	TCATGA	1 cut(s)	282
BspQI	GCTCTTC	1 cut(s)	58
BsrDI	GCAATG	1 cut(s)	121
BsrI	ACTGG	1 cut(s)	150
BssECI	CCNNGG	1 cut(s)	77
BssMI	GATC	1 cut(s)	108
BssT1I	CCWWGG	1 cut(s)	77
Bst4CI	ACNGT	2 cut(s)	266, 404
Bst6I	CTCTTC	2 cut(s)	58, 233
BstC8I	GCNNGC	2 cut(s)	84, 547
BstDEI	CTNAG	1 cut(s)	18
BstF5I	GGATG	2 cut(s)	58, 390
BstKTI	GATC	1 cut(s)	111
BstMBI	GATC	1 cut(s)	108
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstSFI	CTRYAG	1 cut(s)	9
BsuRI	GGCC	2 cut(s)	76, 86
BtsCI	GGATG	2 cut(s)	58, 390
Cac8I	GCNNGC	2 cut(s)	84, 547
CciI	TCATGA	1 cut(s)	282
Cfr13I	GGNCC	1 cut(s)	270
CviAII	CATG	1 cut(s)	283
DdeI	CTNAG	1 cut(s)	18
DpnI	GATC	1 cut(s)	110
DpnII	GATC	1 cut(s)	108
Eam1104I	CTCTTC	2 cut(s)	58, 233
EarI	CTCTTC	2 cut(s)	58, 233
Eco130I	CCWWGG	1 cut(s)	77
Eco147I	AGGCCT	1 cut(s)	76
Eco47I	GGWCC	1 cut(s)	270
EcoT14I	CCWWGG	1 cut(s)	77
ErhI	CCWWGG	1 cut(s)	77
FaeI	CATG	1 cut(s)	286
FaiI	YATR	9 cut(s)	11, 39, 59, 168, 185, 284, 293, 295, 317
FalI	AAGNNNNNCTT	2 cut(s)	11, 43
FaqI	GGGAC	1 cut(s)	156
FatI	CATG	1 cut(s)	282
FauI	CCCGC	1 cut(s)	299
FbaI	TGATCA	1 cut(s)	108
FokI	GGATG	2 cut(s)	65, 377
FspBI	CTAG	2 cut(s)	69, 452
GsuI	CTGGAG	1 cut(s)	167
HaeIII	GGCC	2 cut(s)	76, 86
Hin1II	CATG	1 cut(s)	286
HphI	GGTGA	1 cut(s)	117
Hpy188I	TCNGA	1 cut(s)	247
Hpy188III	TCNNGA	3 cut(s)	283, 496, 552
Hpy99I	CGWCG	1 cut(s)	212
HpyCH4III	ACNGT	2 cut(s)	266, 404
HpyCH4IV	ACGT	1 cut(s)	426
HpyCH4V	TGCA	2 cut(s)	534, 545
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	1 cut(s)	18
HpySE526I	ACGT	1 cut(s)	426
Hsp92II	CATG	1 cut(s)	286
Ksp22I	TGATCA	1 cut(s)	108
Kzo9I	GATC	1 cut(s)	108
LguI	GCTCTTC	1 cut(s)	58
LmnI	GCTCC	1 cut(s)	554
LpnPI	CCDG	4 cut(s)	68, 131, 273, 339
LweI	GCATC	1 cut(s)	43
MaeI	CTAG	2 cut(s)	69, 452
MaeII	ACGT	1 cut(s)	426
MaeIII	GTNAC	1 cut(s)	200
MalI	GATC	1 cut(s)	110
MboI	GATC	1 cut(s)	108
MboII	GAAGA	4 cut(s)	75, 242, 250, 536
MluCI	AATT	4 cut(s)	93, 130, 159, 455
MmeI	TCCRAC	3 cut(s)	30, 248, 327
MnlI	CCTC	2 cut(s)	66, 313
MseI	TTAA	1 cut(s)	152
MwoI	GCNNNNNNNGC	1 cut(s)	14
NdeII	GATC	1 cut(s)	108
NlaIII	CATG	1 cut(s)	286
PagI	TCATGA	1 cut(s)	282
PceI	AGGCCT	1 cut(s)	76
PciSI	GCTCTTC	1 cut(s)	58
PflFI	GACNNNGTC	1 cut(s)	428
PsiI	TTATAA	1 cut(s)	39
PspPI	GGNCC	1 cut(s)	270
PsyI	GACNNNGTC	1 cut(s)	428
SapI	GCTCTTC	1 cut(s)	58
SaqAI	TTAA	1 cut(s)	152
Sau3AI	GATC	1 cut(s)	108
Sau96I	GGNCC	1 cut(s)	270
SetI	ASST	8 cut(s)	10, 70, 123, 184, 275, 355, 429, 551
SfaNI	GCATC	1 cut(s)	43
SfcI	CTRYAG	1 cut(s)	9
SinI	GGWCC	1 cut(s)	270
Sse9I	AATT	4 cut(s)	93, 130, 159, 455
SseBI	AGGCCT	1 cut(s)	76
SsiI	CCGC	1 cut(s)	306
SspI	AATATT	1 cut(s)	438
SspMI	CTAG	2 cut(s)	69, 452
StuI	AGGCCT	1 cut(s)	76
StyI	CCWWGG	1 cut(s)	77
TaaI	ACNGT	2 cut(s)	266, 404
TaiI	ACGT	1 cut(s)	429
TaqI	TCGA	1 cut(s)	360
TasI	AATT	4 cut(s)	93, 130, 159, 455
Tru1I	TTAA	1 cut(s)	152
Tru9I	TTAA	1 cut(s)	152
TspDTI	ATGAA	3 cut(s)	17, 251, 271
Tth111I	GACNNNGTC	1 cut(s)	428
VpaK11BI	GGWCC	1 cut(s)	270
XapI	RAATTY	1 cut(s)	93
XspI	CTAG	2 cut(s)	69, 452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.