Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001673

Physical Location & Seq

Genomic Coordinates Forward (+)

370745 .. 373245

Gene Structure 2501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28216

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2088 bp

ATGATAAGCTCCACACCCTCTTCGCTCTTCCATAACCGCCACACCCTCTCTCACTCCCTCTCTTCCTCCTCTAGAAAGCTCAGGCCAAGTACCTCTGATATTCACACCTTCAATCTCACCTTCCCTACACTTCACTCCAGAATTTCTCTCCAAATAAACCATGTTTCTTTACAAGAAACCCAGAGCCCAAAACTTGAAAACCCTCCAAGCCCAGATGGCAATTCCTCGTCCTCGTCCAAAAGCTATATCTGGGTCAATCCCAGCAGCCCCAGAGCTTCACAGCTCAGGAAGAAATCCTACGATTCCAGGTATGCTTCTCTAGTCAAAGCAGCTGAGTCCTTGAACTCTACTGGTCTAAGTGAAGGTGATGTTATCGGTATTTTAAAGGGTTTAGGTGACAGGGTTTTGGAACAAGATGCTGTGGTTGTTCTCAATAATATGGTTAATCCCGAAAATGCGTTGCTTGTTCTCAAGTACTTTCAGCAGAGGTTTAAACCAAAGAGGGAAGTGGTTCTCTATAATGTGACCTTGAAAGTTTTTAGGAAGTGTAAGGATTTGGAGAGAGCAGAGAAGCTGTTTTATGAGATACTTGAGAGAGGTGTTAAACCTGATAATGTTACATTTTCGACTATGATTAGCTGTGCTAGGATGTGTTATCTGCCTGATAAGGCTGTGGAGTGGTTTGAGAAGATGCCTACTTTTGGGTGTAATCCCGATGATGTTACCTATTCAGCTATGATTGACGCATATGGGCGTGCCGGTAATGTGGACAAGGCTTTTAGCTTGTATGACCGCGCTAGGACAGAGAAGTGGCGCATTGATCCAGTGACATTTGCAACGTTGATTAAGATTCACGGGCAATCGGGGAATTATGATGGGTGCTTGAATGTTTACGAGGAAATGAAGGCTATTGGGGTGAAGCCGAACATGGTTATTTATAATACTTTGTTGGATGCTATGGGAAGAGCTAAGAGGCCTTGGCAGGCCAAGAAAATTTACCGAGAGATGATCAGCAAGGGGTCTTCCCCAAATTGGGTGACCTATGCATCTCTGCTACGGGCCTTTGGTAGAGCTCGCTATGGTGATGATGCTCTGAATGTGTACAAGGAGATGAAGGAGAAGGGAATGGAGTTGAATGTCATTCTCTACAACACCCTTTTGTCTATGTGTGCTGATATTGGCTACACTGATCAAGCTATTGAGATTTTCAAAGACATGAAGAGTTCCGAAACTTGGAAGCCTGATAGTTGGACATTTTCATCCATGATTACCATATATTCCTGTAGCGGGAAAGTCTCAGAGGCAGAGAGGACGTTGAATGAGATGGTGGAAGCTGGTTTCCAGCCTAATATCTTTATTTTGACATCTCTAATACAATGCTATGGGAAGGCCAAGCGTACTGATGATGTTGTCAGGTCATTCAATCAACTACTAGAATTGGGCATAACTCCTGATGAGCGTTTCTGTGGTTGTCTCCTGAATGTGATGACCCAAACACCAAAGGATGAACTATCTAAGCTGACTGATTGCATTGAGCGGGGTAATGAGAAGCTTGGATATGTTGTAAGACTTCTGGTAGAGAAGCAAGACAGTAGTGAAAACTTCAGGAAGGAAGCATCAGAACTTTTTAATTCAGTTGGTTCCGATGTAAAGAAGGCCTACTGCAATTGCTTGATTGATCTTTGTGTGAACCTCGATCTCTTGGAGAGAGCCTGTGAGCTTCTAGACCTGGGCCTTACACTTGAGATATACACAGATATACAGTCAAGGTCTCCAACCCAGTGGTCTCTGTACCTCAAGGGTCTATCTCTTGGGGCAGCTCTTACTGCATTACATGTTTGGATTAATGACTTGTCTCGTTCGCTGGAATCTGGGGAGGAGCTTCCACCTCTGCTTGGAATTAATACAGGACATGGCAAACATAAATATTCAGACAAAGGTCTAGCGAGTGTGTTCGAGTCACATTTGAAGGAAGTAGACGCTCCGTTCCATGAGGCCCCAGACAAGGTTGGCTGGTTTTTGACTACCAAGGTTGCAGTGACGTCATGGTTGGAGTCTAGAAGGTCACCACAAGTAGTTGCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031425 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

695

Amino Acids

78.24

Weight (kDa)

7.79

Isoelectric Point (pI)

37.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	169 - 214	1e-09	PPR repeat family
PPR_2	PF13041	221 - 250	2.9e-06	PPR repeat family
TPR_24	PF23276	224 - 336	1.6e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	235 - 265	4.3e-10	PPR repeat
PPR_2	PF13041	241 - 283	7.8e-07	PPR repeat family
PPR	PF01535	241 - 265	5.4e-07	PPR repeat
PPR_3	PF13812	272 - 321	1.2e-07	Pentatricopeptide repeat domain
TPR_24	PF23276	289 - 406	2.8e-06	Fungal tetratrico peptide repeats
PPR_2	PF13041	308 - 356	1e-11	PPR repeat family
PPR_3	PF13812	331 - 391	2e-11	Pentatricopeptide repeat domain
PPR	PF01535	346 - 376	7.6e-06	PPR repeat
PPR_long	PF17177	363 - 500	5.3e-13	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	367 - 426	5.7e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	379 - 424	2.7e-09	PPR repeat family
PPR	PF01535	418 - 447	8.6e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16390
fragaria_vesca	FvH4_3g00440 FvH4_3g00470
malus_domestica	MD00G1221000.v1.1 MD05G1360400.v1.1 MD08G1234300.v1.1 MD10G1337400.v1.1 MD10G1337800.v1.1 MD10G1338000.v1.1
prunus_persica	Prupe.3G138500_v2.0.a1 Prupe.4G005200_v2.0.a1
pyrus_communis	pycom05g32720 pycom10g28680 pycom10g28700 pycom10g28720 pycom10g28750
rosa_chinensis	RchiOBHm_Chr1g0364151 RchiOBHm_Chr2g0155431 RchiOBHm_Chr4g0402181 RchiOBHm_Chr5g0000631 RchiOBHm_Chr6g0271321
rosa_laevigata	RLG00000004254 RLG00000013858 RLG00000028931 RLG00000030883
rosa_multiflora	Rmu_co8004710.1_g000001 Rmu_co8021096.1_g000001 Rmu_co8161794.1_g000001 Rmu_sc0000795.1_g000110 Rmu_sc0001141.1_g000016 Rmu_sc0003662.1_g000007 Rmu_sc0003699.1_g000009 Rmu_sc0006695.1_g000081 Rmu_sc0010255.1_g000007 Rmu_sc0011992.1_g000014 Rmu_sc0016929.1_g000002 Rmu_sc0017523.1_g000008 Rmu_sc0021532.1_g000001 Rmu_sc0029877.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001310 Rroxscaffold_1G00075570 Rroxscaffold_4G00324290
rosa_rugosa	Rorug04G0385500 Rorug07G0309300.1
rosa_samantha	Rh5AG005400 Rh5BG007000 Rh5CG005700 Rh5DG005600
rosa_wichuraiana	Rw5G000530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	939
AatII	GACGTC	1 cut(s)	2045
AccBSI	CCGCTC	1 cut(s)	1537
AccI	GTMKAC	1 cut(s)	1977
AccII	CGCG	1 cut(s)	795
AciI	CCGC	4 cut(s)	37, 793, 1287, 1537
AclI	AACGTT	1 cut(s)	839
AclWI	GGATC	1 cut(s)	815
AcsI	RAATTY	2 cut(s)	141, 993
AcuI	CTGAAG	1 cut(s)	1588
AcyI	GRCGYC	1 cut(s)	2042
AfaI	GTAC	5 cut(s)	91, 476, 1103, 1399, 1793
AfiI	CCNNNNNNNGG	7 cut(s)	701, 1032, 1033, 1233, 1287, 1895, 2005
AflIII	ACRYGT	1 cut(s)	1834
AjnI	CCWGG	2 cut(s)	305, 1728
Alw21I	GWGCWC	1 cut(s)	1075
Alw26I	GTCTC	5 cut(s)	1300, 1478, 1776, 1791, 1860
AlwI	GGATC	1 cut(s)	815
AoxI	GGCC	8 cut(s)	83, 974, 984, 1059, 1389, 1656, 1732, 1995
ApeKI	GCWGC	4 cut(s)	264, 329, 1817, 2081
ApoI	RAATTY	2 cut(s)	141, 993
AseI	ATTAAT	2 cut(s)	1845, 1902
Asp700I	GAANNNNTTC	1 cut(s)	510
AspLEI	GCGC	2 cut(s)	797, 816
AspS9I	GGNCC	3 cut(s)	1059, 1732, 1996
AsuHPI	GGTGA	7 cut(s)	109, 377, 407, 928, 1048, 1094, 2058
BanII	GRGCYC	2 cut(s)	188, 1075
BarI	GAAGNNNNNNTAC	2 cut(s)	281, 313
BbsI	GAAGAC	1 cut(s)	1014
Bbv12I	GWGCWC	1 cut(s)	1075
BbvI	GCAGC	4 cut(s)	276, 341, 1829, 2068
BccI	CCATC	3 cut(s)	209, 869, 1318
BciT130I	CCWGG	2 cut(s)	307, 1730
BclI	TGATCA	2 cut(s)	1008, 1189
BcoDI	GTCTC	5 cut(s)	1300, 1478, 1776, 1791, 1860
BfaI	CTAG	8 cut(s)	72, 320, 645, 798, 1433, 1724, 1943, 2058
BfmI	CTRYAG	1 cut(s)	1282
BglI	GCCNNNNNGGC	1 cut(s)	216
BisI	GCNGC	4 cut(s)	265, 330, 1818, 2082
BlsI	GCNGC	4 cut(s)	266, 331, 1819, 2083
BmcAI	AGTACT	1 cut(s)	476
Bme1390I	CCNGG	2 cut(s)	307, 1730
BmgT120I	GGNCC	3 cut(s)	1059, 1732, 1996
BmiI	GGNNCC	2 cut(s)	1642, 1998
BmrFI	CCNGG	2 cut(s)	307, 1730
BmrI	ACTGGG	1 cut(s)	1774
BmsI	GCATC	6 cut(s)	406, 681, 943, 1055, 1078, 1625
BmuI	ACTGGG	1 cut(s)	1774
BoxI	GACNNNNGTC	1 cut(s)	1938
BpiI	GAAGAC	1 cut(s)	1014
BpmI	CTGGAG	1 cut(s)	121
Bpu10I	CCTNAGC	2 cut(s)	80, 284
BpuEI	CTTGAG	4 cut(s)	455, 611, 1763, 1781
BsaHI	GRCGYC	1 cut(s)	2042
BsaI	GGTCTC	2 cut(s)	1776, 1791
BsaJI	CCNNGG	3 cut(s)	977, 1729, 2028
Bsc4I	CCNNNNNNNGG	7 cut(s)	701, 1032, 1033, 1233, 1287, 1895, 2005
Bse118I	RCCGGY	1 cut(s)	758
Bse1I	ACTGG	3 cut(s)	355, 824, 1780
BseBI	CCWGG	2 cut(s)	307, 1730
BseDI	CCNNGG	3 cut(s)	977, 1729, 2028
BseGI	GGATG	4 cut(s)	654, 958, 1259, 1510
BseLI	CCNNNNNNNGG	7 cut(s)	701, 1032, 1033, 1233, 1287, 1895, 2005
BseMII	CTCAG	4 cut(s)	94, 298, 324, 1311
BseNI	ACTGG	3 cut(s)	355, 824, 1780
BseRI	GAGGAG	2 cut(s)	58, 1892
BseXI	GCAGC	4 cut(s)	276, 341, 1829, 2068
BseYI	CCCAGC	1 cut(s)	260
Bsh1236I	CGCG	1 cut(s)	795
BshFI	GGCC	8 cut(s)	85, 976, 986, 1061, 1391, 1658, 1734, 1997
BsiHKAI	GWGCWC	1 cut(s)	1075
BsiSI	CCGG	1 cut(s)	759
BslI	CCNNNNNNNGG	7 cut(s)	701, 1032, 1033, 1233, 1287, 1895, 2005
BsmAI	GTCTC	5 cut(s)	1300, 1478, 1776, 1791, 1860
BsnI	GGCC	8 cut(s)	85, 976, 986, 1061, 1391, 1658, 1734, 1997
Bso31I	GGTCTC	2 cut(s)	1776, 1791
Bsp1286I	GDGCHC	2 cut(s)	188, 1075
Bsp1407I	TGTACA	1 cut(s)	1101
Bsp143I	GATC	5 cut(s)	820, 1008, 1189, 1678, 1696
BspACI	CCGC	4 cut(s)	37, 793, 1287, 1537
BspANI	GGCC	8 cut(s)	85, 976, 986, 1061, 1391, 1658, 1734, 1997
BspCNI	CTCAG	4 cut(s)	93, 297, 325, 1310
BspFNI	CGCG	1 cut(s)	795
BspLI	GGNNCC	2 cut(s)	1642, 1998
BspPI	GGATC	1 cut(s)	815
BspQI	GCTCTTC	2 cut(s)	32, 958
BspTNI	GGTCTC	2 cut(s)	1776, 1791
BsrBI	CCGCTC	1 cut(s)	1537
BsrFI	RCCGGY	1 cut(s)	758
BsrGI	TGTACA	1 cut(s)	1101
BsrI	ACTGG	3 cut(s)	355, 824, 1780
BssAI	RCCGGY	1 cut(s)	758
BssECI	CCNNGG	3 cut(s)	977, 1729, 2028
BssMI	GATC	5 cut(s)	820, 1008, 1189, 1678, 1696
BssNI	GRCGYC	1 cut(s)	2042
BssT1I	CCWWGG	2 cut(s)	977, 2028
Bst2UI	CCWGG	2 cut(s)	307, 1730
Bst4CI	ACNGT	2 cut(s)	1592, 1764
Bst6I	CTCTTC	5 cut(s)	25, 32, 67, 958, 1214
BstACI	GRCGYC	1 cut(s)	2042
BstAUI	TGTACA	1 cut(s)	1101
BstC8I	GCNNGC	3 cut(s)	756, 984, 1075
BstDEI	CTNAG	8 cut(s)	80, 284, 333, 356, 969, 1297, 1515, 2085
BstEII	GGTNACC	2 cut(s)	1036, 2064
BstF5I	GGATG	4 cut(s)	654, 958, 1259, 1510
BstFNI	CGCG	1 cut(s)	795
BstHHI	GCGC	2 cut(s)	797, 816
BstKTI	GATC	5 cut(s)	823, 1011, 1192, 1681, 1699
BstMAI	GTCTC	5 cut(s)	1300, 1478, 1776, 1791, 1860
BstMBI	GATC	5 cut(s)	820, 1008, 1189, 1678, 1696
BstMWI	GCNNNNNNNGC	2 cut(s)	216, 1826
BstNI	CCWGG	2 cut(s)	307, 1730
BstNSI	RCATGY	1 cut(s)	1838
BstPAI	GACNNNNGTC	1 cut(s)	1938
BstPI	GGTNACC	2 cut(s)	1036, 2064
BstSCI	CCNGG	2 cut(s)	305, 1728
BstSFI	CTRYAG	1 cut(s)	1282
BstUI	CGCG	1 cut(s)	795
BstV1I	GCAGC	4 cut(s)	276, 341, 1829, 2068
BstV2I	GAAGAC	1 cut(s)	1014
BstXI	CCANNNNNNTGG	1 cut(s)	1782
BsuRI	GGCC	8 cut(s)	85, 976, 986, 1061, 1391, 1658, 1734, 1997
BtsCI	GGATG	4 cut(s)	654, 958, 1259, 1510
BtsI	GCAGTG	1 cut(s)	2043
BtsIMutI	CAGTG	4 cut(s)	831, 1185, 1787, 2043
Cac8I	GCNNGC	3 cut(s)	756, 984, 1075
CfoI	GCGC	2 cut(s)	797, 816
Cfr10I	RCCGGY	1 cut(s)	758
Cfr13I	GGNCC	3 cut(s)	1059, 1732, 1996
CseI	GACGC	2 cut(s)	752, 1988
Csp6I	GTAC	5 cut(s)	90, 475, 1102, 1398, 1792
CviAII	CATG	8 cut(s)	161, 928, 1216, 1264, 1835, 1913, 1991, 2046
CviQI	GTAC	5 cut(s)	90, 475, 1102, 1398, 1792
DdeI	CTNAG	8 cut(s)	80, 284, 333, 356, 969, 1297, 1515, 2085
DpnI	GATC	5 cut(s)	822, 1010, 1191, 1680, 1698
DpnII	GATC	5 cut(s)	820, 1008, 1189, 1678, 1696
DraI	TTTAAA	2 cut(s)	384, 493
Eam1104I	CTCTTC	5 cut(s)	25, 32, 67, 958, 1214
EarI	CTCTTC	5 cut(s)	25, 32, 67, 958, 1214
Ecl136II	GAGCTC	1 cut(s)	1073
Eco130I	CCWWGG	2 cut(s)	977, 2028
Eco147I	AGGCCT	2 cut(s)	976, 1658
Eco24I	GRGCYC	2 cut(s)	188, 1075
Eco31I	GGTCTC	2 cut(s)	1776, 1791
Eco53kI	GAGCTC	1 cut(s)	1073
Eco57I	CTGAAG	1 cut(s)	1588
Eco91I	GGTNACC	2 cut(s)	1036, 2064
EcoICRI	GAGCTC	1 cut(s)	1073
EcoO109I	RGGNCCY	1 cut(s)	1996
EcoO65I	GGTNACC	2 cut(s)	1036, 2064
EcoRII	CCWGG	2 cut(s)	305, 1728
EcoT14I	CCWWGG	2 cut(s)	977, 2028
EcoT22I	ATGCAT	1 cut(s)	1048
EcoT38I	GRGCYC	2 cut(s)	188, 1075
ErhI	CCWWGG	2 cut(s)	977, 2028
FaeI	CATG	8 cut(s)	164, 931, 1219, 1267, 1838, 1916, 1994, 2049
FatI	CATG	8 cut(s)	160, 927, 1215, 1263, 1834, 1912, 1990, 2045
FauI	CCCGC	2 cut(s)	1280, 1530
FauNDI	CATATG	1 cut(s)	748
FbaI	TGATCA	2 cut(s)	1008, 1189
FblI	GTMKAC	1 cut(s)	1977
Fnu4HI	GCNGC	4 cut(s)	265, 330, 1818, 2082
FokI	GGATG	4 cut(s)	661, 965, 1246, 1517
FriOI	GRGCYC	2 cut(s)	188, 1075
Fsp4HI	GCNGC	4 cut(s)	265, 330, 1818, 2082
FspBI	CTAG	8 cut(s)	72, 320, 645, 798, 1433, 1724, 1943, 2058
GlaI	GCGC	2 cut(s)	796, 815
GluI	GCNGC	4 cut(s)	265, 330, 1818, 2082
GsaI	CCCAGC	1 cut(s)	264
GsuI	CTGGAG	1 cut(s)	121
HaeIII	GGCC	8 cut(s)	85, 976, 986, 1061, 1391, 1658, 1734, 1997
HapII	CCGG	1 cut(s)	759
HgaI	GACGC	2 cut(s)	752, 1988
HhaI	GCGC	2 cut(s)	797, 816
Hin1I	GRCGYC	1 cut(s)	2042
Hin1II	CATG	8 cut(s)	164, 931, 1219, 1267, 1838, 1916, 1994, 2049
Hin6I	GCGC	2 cut(s)	795, 814
HinP1I	GCGC	2 cut(s)	795, 814
HindIII	AAGCTT	1 cut(s)	1550
HinfI	GANTC	6 cut(s)	302, 335, 850, 1868, 1958, 2054
HpaII	CCGG	1 cut(s)	759
HphI	GGTGA	7 cut(s)	109, 377, 407, 928, 1048, 1094, 2058
Hpy166II	GTNNAC	5 cut(s)	769, 892, 1102, 1690, 1978
Hpy188I	TCNGA	7 cut(s)	97, 1095, 1228, 1300, 1621, 1645, 1933
Hpy8I	GTNNAC	5 cut(s)	769, 892, 1102, 1690, 1978
HpyCH4III	ACNGT	2 cut(s)	1592, 1764
HpyCH4IV	ACGT	3 cut(s)	839, 1313, 2042
HpyCH4V	TGCA	6 cut(s)	836, 1046, 1530, 1665, 1829, 2036
HpyF10VI	GCNNNNNNNGC	2 cut(s)	216, 1826
HpyF3I	CTNAG	8 cut(s)	80, 284, 333, 356, 969, 1297, 1515, 2085
HpySE526I	ACGT	3 cut(s)	839, 1313, 2042
Hsp92I	GRCGYC	1 cut(s)	2042
Hsp92II	CATG	8 cut(s)	164, 931, 1219, 1267, 1838, 1916, 1994, 2049
HspAI	GCGC	2 cut(s)	795, 814
Ksp22I	TGATCA	2 cut(s)	1008, 1189
Kzo9I	GATC	5 cut(s)	820, 1008, 1189, 1678, 1696
LguI	GCTCTTC	2 cut(s)	32, 958
LmnI	GCTCC	3 cut(s)	14, 1879, 1987
Lsp1109I	GCAGC	4 cut(s)	276, 341, 1829, 2068
LweI	GCATC	6 cut(s)	406, 681, 943, 1055, 1078, 1625
MaeI	CTAG	8 cut(s)	72, 320, 645, 798, 1433, 1724, 1943, 2058
MaeII	ACGT	3 cut(s)	839, 1313, 2042
MaeIII	GTNAC	9 cut(s)	395, 523, 616, 721, 826, 1036, 1959, 2038, 2064
MalI	GATC	5 cut(s)	822, 1010, 1191, 1680, 1698
MbiI	CCGCTC	1 cut(s)	1537
MboI	GATC	5 cut(s)	820, 1008, 1189, 1678, 1696
MboII	GAAGA	8 cut(s)	12, 19, 54, 301, 700, 975, 1014, 1231
MfeI	CAATTG	1 cut(s)	1666
MhlI	GDGCHC	2 cut(s)	188, 1075
MluCI	AATT	9 cut(s)	141, 220, 868, 993, 1030, 1436, 1630, 1666, 1899
MlyI	GAGTC	3 cut(s)	344, 1967, 2063
MmeI	TCCRAC	4 cut(s)	930, 1229, 1799, 2031
Mph1103I	ATGCAT	1 cut(s)	1048
MroXI	GAANNNNTTC	1 cut(s)	510
MseI	TTAA	8 cut(s)	383, 444, 492, 603, 846, 1629, 1845, 1902
MspA1I	CMGCKG	1 cut(s)	332
MspI	CCGG	1 cut(s)	759
MspR9I	CCNGG	2 cut(s)	307, 1730
MssI	GTTTAAAC	1 cut(s)	493
MunI	CAATTG	1 cut(s)	1666
MvaI	CCWGG	2 cut(s)	307, 1730
MvnI	CGCG	1 cut(s)	795
MwoI	GCNNNNNNNGC	2 cut(s)	216, 1826
NdeI	CATATG	1 cut(s)	748
NdeII	GATC	5 cut(s)	820, 1008, 1189, 1678, 1696
NlaIII	CATG	8 cut(s)	164, 931, 1219, 1267, 1838, 1916, 1994, 2049
NlaIV	GGNNCC	2 cut(s)	1642, 1998
NmuCI	GTSAC	7 cut(s)	395, 523, 826, 1036, 1959, 2038, 2064
NsiI	ATGCAT	1 cut(s)	1048
NspI	RCATGY	1 cut(s)	1838
PceI	AGGCCT	2 cut(s)	976, 1658
PciI	ACATGT	1 cut(s)	1834
PciSI	GCTCTTC	2 cut(s)	32, 958
PdmI	GAANNNNTTC	1 cut(s)	510
PfeI	GAWTC	3 cut(s)	302, 850, 1868
PkrI	GCNGC	4 cut(s)	266, 331, 1819, 2083
PleI	GAGTC	3 cut(s)	343, 1966, 2062
PmeI	GTTTAAAC	1 cut(s)	493
PpsI	GAGTC	3 cut(s)	343, 1966, 2062
PscI	ACATGT	1 cut(s)	1834
PshAI	GACNNNNGTC	1 cut(s)	1938
PshBI	ATTAAT	2 cut(s)	1845, 1902
PsiI	TTATAA	1 cut(s)	939
Psp124BI	GAGCTC	1 cut(s)	1075
Psp1406I	AACGTT	1 cut(s)	839
Psp6I	CCWGG	2 cut(s)	305, 1728
PspEI	GGTNACC	2 cut(s)	1036, 2064
PspFI	CCCAGC	1 cut(s)	260
PspGI	CCWGG	2 cut(s)	305, 1728
PspN4I	GGNNCC	2 cut(s)	1642, 1998
PspPI	GGNCC	3 cut(s)	1059, 1732, 1996
PvuII	CAGCTG	1 cut(s)	332
RsaI	GTAC	5 cut(s)	91, 476, 1103, 1399, 1793
RsaNI	GTAC	5 cut(s)	90, 475, 1102, 1398, 1792
SacI	GAGCTC	1 cut(s)	1075
SapI	GCTCTTC	2 cut(s)	32, 958
SaqAI	TTAA	8 cut(s)	383, 444, 492, 603, 846, 1629, 1845, 1902
SatI	GCNGC	4 cut(s)	265, 330, 1818, 2082
Sau3AI	GATC	5 cut(s)	820, 1008, 1189, 1678, 1696
Sau96I	GGNCC	3 cut(s)	1059, 1732, 1996
ScaI	AGTACT	1 cut(s)	476
SchI	GAGTC	3 cut(s)	344, 1967, 2063
ScrFI	CCNGG	2 cut(s)	307, 1730
SduI	GDGCHC	2 cut(s)	188, 1075
SfaNI	GCATC	6 cut(s)	406, 681, 943, 1055, 1078, 1625
SfcI	CTRYAG	1 cut(s)	1282
SmlI	CTYRAG	4 cut(s)	470, 590, 1742, 1796
SmoI	CTYRAG	4 cut(s)	470, 590, 1742, 1796
Sse9I	AATT	9 cut(s)	141, 220, 868, 993, 1030, 1436, 1630, 1666, 1899
SseBI	AGGCCT	2 cut(s)	976, 1658
SsiI	CCGC	4 cut(s)	37, 793, 1287, 1537
SspI	AATATT	1 cut(s)	1928
SspMI	CTAG	8 cut(s)	72, 320, 645, 798, 1433, 1724, 1943, 2058
SstI	GAGCTC	1 cut(s)	1075
StuI	AGGCCT	2 cut(s)	976, 1658
StyD4I	CCNGG	2 cut(s)	305, 1728
StyI	CCWWGG	2 cut(s)	977, 2028
TaaI	ACNGT	2 cut(s)	1592, 1764
TaiI	ACGT	3 cut(s)	842, 1316, 2045
TaqI	TCGA	3 cut(s)	626, 1695, 1956
TasI	AATT	9 cut(s)	141, 220, 868, 993, 1030, 1436, 1630, 1666, 1899
TatI	WGTACW	2 cut(s)	474, 1101
TfiI	GAWTC	3 cut(s)	302, 850, 1868
Tru1I	TTAA	8 cut(s)	383, 444, 492, 603, 846, 1629, 1845, 1902
Tru9I	TTAA	8 cut(s)	383, 444, 492, 603, 846, 1629, 1845, 1902
TscAI	CASTG	4 cut(s)	831, 1192, 1787, 2043
TseFI	GTSAC	7 cut(s)	395, 523, 826, 1036, 1959, 2038, 2064
TseI	GCWGC	4 cut(s)	264, 329, 1817, 2081
Tsp45I	GTSAC	7 cut(s)	395, 523, 826, 1036, 1959, 2038, 2064
TspDTI	ATGAA	5 cut(s)	917, 1127, 1232, 1248, 1521
TspGWI	ACGGA	1 cut(s)	1974
TspRI	CASTG	4 cut(s)	831, 1192, 1787, 2043
VspI	ATTAAT	2 cut(s)	1845, 1902
XapI	RAATTY	2 cut(s)	141, 993
XbaI	TCTAGA	3 cut(s)	71, 1723, 2057
XceI	RCATGY	1 cut(s)	1838
XmiI	GTMKAC	1 cut(s)	1977
XmnI	GAANNNNTTC	1 cut(s)	510
XspI	CTAG	8 cut(s)	72, 320, 645, 798, 1433, 1724, 1943, 2058
ZraI	GACGTC	1 cut(s)	2043
ZrmI	AGTACT	1 cut(s)	476
Zsp2I	ATGCAT	1 cut(s)	1048

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.