Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029877.1

Orthogroup ID

OG0001673

Physical Location & Seq

Genomic Coordinates Reverse (-)

958 .. 2145

Gene Structure 1188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029877.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

atgaaggctattggggtgaagccgaacatggttatttataatactttgttggatgctatgggaagagctaagaggccttggcaggccaagaaaatttaccgagagatgatcagcaaggggtcttcgccaaattgggtgacctatgcatctctgctacgggcctttggtagagctcgctatggtgatgatgctctgaatgtgtacaaggagatgaaggagaagggaatggagttgaatgtcattctctacaacacccttttgtctatgtgtgctgatattggctacactgatcaagctattgagattttcaaagacatgaagagttccgaaacttggaagcctgatagttggacattttcatccatgattaccatatattcctgtagcgggaaagtctcagaggcagagaggacgttgaatgagatggtggaagctggtttccagcctaatatctttattttgacatctctaatacaatgctatgggaaggccaagcgtactgatgatgttgtcaggtcattcaatcaactactagaattgggcataactcctgatgagcgtttctgtggttgtctcctgaatgtgatgacccaaacaccaaaggatgaactatctaagctgactgattgcattgagcggggtaatgagaagcttggatatgttgtaagacttctggtagagaagcaagacagtagtgaaaacttcaggaaggaagcatcagagctttttaattcagttggttccgatgtaaagaaggcctactgcaattgcttgattgatctttgtgtgaacctcgatctcttggagagagcctgtgagcttctagacctgggccttacacttgagatatacacagatatacagtcaaggtctccaacccagtggtctctgtatctcaagggtctctctcttggggcagctcttactgcattacatgtttggattaatgacttgtctcgttcgctggaatctggggaggagcttccacctctgctaggaattaataccggacatggcaaacataaatattcagataaaggtctagcgagtgtgttcgagtcacatttgaaggaagtagatgctccgttccatgaggccccagacaaggttggctggtttttgactaccaaggttgcagtgacgtcatggttggagtctagaaggtcaccacaagtagctgctgcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031425 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

395

Amino Acids

44.38

Weight (kDa)

5.89

Isoelectric Point (pI)

32.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16390
fragaria_vesca	FvH4_3g00440 FvH4_3g00470
malus_domestica	MD00G1221000.v1.1 MD05G1360400.v1.1 MD08G1234300.v1.1 MD10G1337400.v1.1 MD10G1337800.v1.1 MD10G1338000.v1.1
prunus_persica	Prupe.3G138500_v2.0.a1 Prupe.4G005200_v2.0.a1
pyrus_communis	pycom05g32720 pycom10g28680 pycom10g28700 pycom10g28720 pycom10g28750
rosa_chinensis	RchiOBHm_Chr1g0364151 RchiOBHm_Chr2g0155431 RchiOBHm_Chr4g0402181 RchiOBHm_Chr5g0000631 RchiOBHm_Chr6g0271321
rosa_laevigata	RLG00000004254 RLG00000013858 RLG00000028931 RLG00000030883
rosa_multiflora	Rmu_co8004710.1_g000001 Rmu_co8021096.1_g000001 Rmu_co8161794.1_g000001 Rmu_sc0000795.1_g000110 Rmu_sc0001141.1_g000016 Rmu_sc0003662.1_g000007 Rmu_sc0003699.1_g000009 Rmu_sc0006695.1_g000081 Rmu_sc0010255.1_g000007 Rmu_sc0011992.1_g000014 Rmu_sc0016929.1_g000002 Rmu_sc0017523.1_g000008 Rmu_sc0021532.1_g000001 Rmu_sc0029877.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001310 Rroxscaffold_1G00075570 Rroxscaffold_4G00324290
rosa_rugosa	Rorug04G0385500 Rorug07G0309300.1
rosa_samantha	Rh5AG005400 Rh5BG007000 Rh5CG005700 Rh5DG005600
rosa_wichuraiana	Rw5G000530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	39
AatII	GACGTC	1 cut(s)	1145
AccBSI	CCGCTC	1 cut(s)	637
AciI	CCGC	2 cut(s)	387, 637
AcsI	RAATTY	1 cut(s)	93
AcuI	CTGAAG	1 cut(s)	688
AcyI	GRCGYC	1 cut(s)	1142
AfaI	GTAC	2 cut(s)	203, 499
AfiI	CCNNNNNNNGG	4 cut(s)	333, 387, 995, 1105
AflIII	ACRYGT	1 cut(s)	934
AgsI	TTSAA	5 cut(s)	235, 310, 418, 523, 1069
AjnI	CCWGG	1 cut(s)	828
Alw21I	GWGCWC	1 cut(s)	175
Alw26I	GTCTC	6 cut(s)	400, 578, 876, 891, 908, 960
AoxI	GGCC	7 cut(s)	74, 84, 159, 489, 756, 832, 1095
ApeKI	GCWGC	3 cut(s)	917, 1178, 1181
ApoI	RAATTY	1 cut(s)	93
AseI	ATTAAT	2 cut(s)	945, 1002
AspS9I	GGNCC	3 cut(s)	159, 832, 1096
AsuHPI	GGTGA	4 cut(s)	28, 148, 194, 1158
BanII	GRGCYC	1 cut(s)	175
BbsI	GAAGAC	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	175
BbvI	GCAGC	3 cut(s)	929, 1165, 1168
BccI	CCATC	1 cut(s)	418
BciT130I	CCWGG	1 cut(s)	830
BclI	TGATCA	2 cut(s)	108, 289
BcoDI	GTCTC	6 cut(s)	400, 578, 876, 891, 908, 960
BfaI	CTAG	5 cut(s)	533, 824, 995, 1043, 1158
BfmI	CTRYAG	1 cut(s)	382
BisI	GCNGC	3 cut(s)	918, 1179, 1182
BlsI	GCNGC	3 cut(s)	919, 1180, 1183
Bme1390I	CCNGG	1 cut(s)	830
BmgT120I	GGNCC	3 cut(s)	159, 832, 1096
BmiI	GGNNCC	2 cut(s)	742, 1098
BmrFI	CCNGG	1 cut(s)	830
BmrI	ACTGGG	1 cut(s)	874
BmsI	GCATC	5 cut(s)	43, 155, 178, 725, 1069
BmuI	ACTGGG	1 cut(s)	874
BpiI	GAAGAC	1 cut(s)	114
BpuEI	CTTGAG	2 cut(s)	863, 881
BsaHI	GRCGYC	1 cut(s)	1142
BsaI	GGTCTC	3 cut(s)	876, 891, 908
BsaJI	CCNNGG	3 cut(s)	77, 829, 1128
BsaWI	WCCGGW	1 cut(s)	1007
Bsc4I	CCNNNNNNNGG	4 cut(s)	333, 387, 995, 1105
Bse1I	ACTGG	1 cut(s)	880
BseBI	CCWGG	1 cut(s)	830
BseDI	CCNNGG	3 cut(s)	77, 829, 1128
BseGI	GGATG	3 cut(s)	58, 359, 610
BseLI	CCNNNNNNNGG	4 cut(s)	333, 387, 995, 1105
BseMII	CTCAG	1 cut(s)	411
BseNI	ACTGG	1 cut(s)	880
BseRI	GAGGAG	1 cut(s)	992
BseXI	GCAGC	3 cut(s)	929, 1165, 1168
BshFI	GGCC	7 cut(s)	76, 86, 161, 491, 758, 834, 1097
BsiHKAI	GWGCWC	1 cut(s)	175
BsiSI	CCGG	1 cut(s)	1008
BslI	CCNNNNNNNGG	4 cut(s)	333, 387, 995, 1105
BsmAI	GTCTC	6 cut(s)	400, 578, 876, 891, 908, 960
BsnI	GGCC	7 cut(s)	76, 86, 161, 491, 758, 834, 1097
Bso31I	GGTCTC	3 cut(s)	876, 891, 908
Bsp1286I	GDGCHC	1 cut(s)	175
Bsp1407I	TGTACA	1 cut(s)	201
Bsp143I	GATC	4 cut(s)	108, 289, 778, 796
BspACI	CCGC	2 cut(s)	387, 637
BspANI	GGCC	7 cut(s)	76, 86, 161, 491, 758, 834, 1097
BspCNI	CTCAG	1 cut(s)	410
BspLI	GGNNCC	2 cut(s)	742, 1098
BspQI	GCTCTTC	1 cut(s)	58
BspTNI	GGTCTC	3 cut(s)	876, 891, 908
BsrBI	CCGCTC	1 cut(s)	637
BsrGI	TGTACA	1 cut(s)	201
BsrI	ACTGG	1 cut(s)	880
BssECI	CCNNGG	3 cut(s)	77, 829, 1128
BssMI	GATC	4 cut(s)	108, 289, 778, 796
BssNI	GRCGYC	1 cut(s)	1142
BssT1I	CCWWGG	2 cut(s)	77, 1128
Bst2UI	CCWGG	1 cut(s)	830
Bst4CI	ACNGT	2 cut(s)	692, 864
Bst6I	CTCTTC	2 cut(s)	58, 314
BstACI	GRCGYC	1 cut(s)	1142
BstAUI	TGTACA	1 cut(s)	201
BstC8I	GCNNGC	2 cut(s)	84, 175
BstDEI	CTNAG	4 cut(s)	69, 397, 615, 1185
BstEII	GGTNACC	2 cut(s)	136, 1164
BstENI	CCTNNNNNAGG	1 cut(s)	993
BstF5I	GGATG	3 cut(s)	58, 359, 610
BstKTI	GATC	4 cut(s)	111, 292, 781, 799
BstMAI	GTCTC	6 cut(s)	400, 578, 876, 891, 908, 960
BstMBI	GATC	4 cut(s)	108, 289, 778, 796
BstMWI	GCNNNNNNNGC	1 cut(s)	926
BstNI	CCWGG	1 cut(s)	830
BstNSI	RCATGY	1 cut(s)	938
BstPI	GGTNACC	2 cut(s)	136, 1164
BstSCI	CCNGG	1 cut(s)	828
BstSFI	CTRYAG	1 cut(s)	382
BstV1I	GCAGC	3 cut(s)	929, 1165, 1168
BstV2I	GAAGAC	1 cut(s)	114
BstXI	CCANNNNNNTGG	1 cut(s)	882
BsuRI	GGCC	7 cut(s)	76, 86, 161, 491, 758, 834, 1097
BtsCI	GGATG	3 cut(s)	58, 359, 610
BtsI	GCAGTG	1 cut(s)	1143
BtsIMutI	CAGTG	3 cut(s)	285, 887, 1143
Cac8I	GCNNGC	2 cut(s)	84, 175
Cfr13I	GGNCC	3 cut(s)	159, 832, 1096
Csp6I	GTAC	2 cut(s)	202, 498
CviAII	CATG	7 cut(s)	28, 316, 364, 935, 1013, 1091, 1146
CviQI	GTAC	2 cut(s)	202, 498
DdeI	CTNAG	4 cut(s)	69, 397, 615, 1185
DpnI	GATC	4 cut(s)	110, 291, 780, 798
DpnII	GATC	4 cut(s)	108, 289, 778, 796
Eam1104I	CTCTTC	2 cut(s)	58, 314
EarI	CTCTTC	2 cut(s)	58, 314
Ecl136II	GAGCTC	1 cut(s)	173
Eco130I	CCWWGG	2 cut(s)	77, 1128
Eco147I	AGGCCT	2 cut(s)	76, 758
Eco24I	GRGCYC	1 cut(s)	175
Eco31I	GGTCTC	3 cut(s)	876, 891, 908
Eco53kI	GAGCTC	1 cut(s)	173
Eco57I	CTGAAG	1 cut(s)	688
Eco91I	GGTNACC	2 cut(s)	136, 1164
EcoICRI	GAGCTC	1 cut(s)	173
EcoNI	CCTNNNNNAGG	1 cut(s)	993
EcoO109I	RGGNCCY	1 cut(s)	1096
EcoO65I	GGTNACC	2 cut(s)	136, 1164
EcoRII	CCWGG	1 cut(s)	828
EcoT14I	CCWWGG	2 cut(s)	77, 1128
EcoT22I	ATGCAT	1 cut(s)	148
EcoT38I	GRGCYC	1 cut(s)	175
ErhI	CCWWGG	2 cut(s)	77, 1128
FaeI	CATG	7 cut(s)	31, 319, 367, 938, 1016, 1094, 1149
FatI	CATG	7 cut(s)	27, 315, 363, 934, 1012, 1090, 1145
FauI	CCCGC	2 cut(s)	380, 630
FbaI	TGATCA	2 cut(s)	108, 289
Fnu4HI	GCNGC	3 cut(s)	918, 1179, 1182
FokI	GGATG	3 cut(s)	65, 346, 617
FriOI	GRGCYC	1 cut(s)	175
Fsp4HI	GCNGC	3 cut(s)	918, 1179, 1182
FspBI	CTAG	5 cut(s)	533, 824, 995, 1043, 1158
GluI	GCNGC	3 cut(s)	918, 1179, 1182
HaeIII	GGCC	7 cut(s)	76, 86, 161, 491, 758, 834, 1097
HapII	CCGG	1 cut(s)	1008
Hin1I	GRCGYC	1 cut(s)	1142
Hin1II	CATG	7 cut(s)	31, 319, 367, 938, 1016, 1094, 1149
HindIII	AAGCTT	1 cut(s)	650
HinfI	GANTC	3 cut(s)	968, 1058, 1154
HpaII	CCGG	1 cut(s)	1008
HphI	GGTGA	4 cut(s)	28, 148, 194, 1158
Hpy166II	GTNNAC	2 cut(s)	202, 790
Hpy188I	TCNGA	6 cut(s)	195, 328, 400, 721, 745, 1033
Hpy188III	TCNNGA	5 cut(s)	551, 577, 706, 824, 1158
Hpy8I	GTNNAC	2 cut(s)	202, 790
HpyAV	CCTTC	7 cut(s)	208, 214, 481, 703, 748, 1063, 1155
HpyCH4III	ACNGT	2 cut(s)	692, 864
HpyCH4IV	ACGT	2 cut(s)	413, 1142
HpyCH4V	TGCA	5 cut(s)	146, 630, 765, 929, 1136
HpyF10VI	GCNNNNNNNGC	1 cut(s)	926
HpyF3I	CTNAG	4 cut(s)	69, 397, 615, 1185
HpySE526I	ACGT	2 cut(s)	413, 1142
Hsp92I	GRCGYC	1 cut(s)	1142
Hsp92II	CATG	7 cut(s)	31, 319, 367, 938, 1016, 1094, 1149
Ksp22I	TGATCA	2 cut(s)	108, 289
Kzo9I	GATC	4 cut(s)	108, 289, 778, 796
LguI	GCTCTTC	1 cut(s)	58
LmnI	GCTCC	2 cut(s)	979, 1087
Lsp1109I	GCAGC	3 cut(s)	929, 1165, 1168
LweI	GCATC	5 cut(s)	43, 155, 178, 725, 1069
MaeI	CTAG	5 cut(s)	533, 824, 995, 1043, 1158
MaeII	ACGT	2 cut(s)	413, 1142
MaeIII	GTNAC	4 cut(s)	136, 1059, 1138, 1164
MalI	GATC	4 cut(s)	110, 291, 780, 798
MbiI	CCGCTC	1 cut(s)	637
MboI	GATC	4 cut(s)	108, 289, 778, 796
MboII	GAAGA	3 cut(s)	75, 114, 331
MfeI	CAATTG	1 cut(s)	766
MhlI	GDGCHC	1 cut(s)	175
MluCI	AATT	6 cut(s)	93, 130, 536, 730, 766, 999
MlyI	GAGTC	2 cut(s)	1067, 1163
MmeI	TCCRAC	4 cut(s)	30, 329, 899, 1131
MnlI	CCTC	7 cut(s)	66, 394, 402, 803, 970, 999, 1087
Mph1103I	ATGCAT	1 cut(s)	148
MseI	TTAA	3 cut(s)	729, 945, 1002
MspI	CCGG	1 cut(s)	1008
MspR9I	CCNGG	1 cut(s)	830
MunI	CAATTG	1 cut(s)	766
MvaI	CCWGG	1 cut(s)	830
MwoI	GCNNNNNNNGC	1 cut(s)	926
NdeII	GATC	4 cut(s)	108, 289, 778, 796
NlaIII	CATG	7 cut(s)	31, 319, 367, 938, 1016, 1094, 1149
NlaIV	GGNNCC	2 cut(s)	742, 1098
NmuCI	GTSAC	4 cut(s)	136, 1059, 1138, 1164
NsiI	ATGCAT	1 cut(s)	148
NspI	RCATGY	1 cut(s)	938
PceI	AGGCCT	2 cut(s)	76, 758
PciI	ACATGT	1 cut(s)	934
PciSI	GCTCTTC	1 cut(s)	58
PfeI	GAWTC	1 cut(s)	968
PkrI	GCNGC	3 cut(s)	919, 1180, 1183
PleI	GAGTC	2 cut(s)	1066, 1162
PpsI	GAGTC	2 cut(s)	1066, 1162
PscI	ACATGT	1 cut(s)	934
PshBI	ATTAAT	2 cut(s)	945, 1002
PsiI	TTATAA	1 cut(s)	39
Psp124BI	GAGCTC	1 cut(s)	175
Psp6I	CCWGG	1 cut(s)	828
PspEI	GGTNACC	2 cut(s)	136, 1164
PspGI	CCWGG	1 cut(s)	828
PspN4I	GGNNCC	2 cut(s)	742, 1098
PspPI	GGNCC	3 cut(s)	159, 832, 1096
RsaI	GTAC	2 cut(s)	203, 499
RsaNI	GTAC	2 cut(s)	202, 498
SacI	GAGCTC	1 cut(s)	175
SapI	GCTCTTC	1 cut(s)	58
SaqAI	TTAA	3 cut(s)	729, 945, 1002
SatI	GCNGC	3 cut(s)	918, 1179, 1182
Sau3AI	GATC	4 cut(s)	108, 289, 778, 796
Sau96I	GGNCC	3 cut(s)	159, 832, 1096
SchI	GAGTC	2 cut(s)	1067, 1163
ScrFI	CCNGG	1 cut(s)	830
SduI	GDGCHC	1 cut(s)	175
SfaNI	GCATC	5 cut(s)	43, 155, 178, 725, 1069
SfcI	CTRYAG	1 cut(s)	382
SmlI	CTYRAG	2 cut(s)	842, 896
SmoI	CTYRAG	2 cut(s)	842, 896
Sse9I	AATT	6 cut(s)	93, 130, 536, 730, 766, 999
SseBI	AGGCCT	2 cut(s)	76, 758
SsiI	CCGC	2 cut(s)	387, 637
SspI	AATATT	1 cut(s)	1028
SspMI	CTAG	5 cut(s)	533, 824, 995, 1043, 1158
SstI	GAGCTC	1 cut(s)	175
StuI	AGGCCT	2 cut(s)	76, 758
StyD4I	CCNGG	1 cut(s)	828
StyI	CCWWGG	2 cut(s)	77, 1128
TaaI	ACNGT	2 cut(s)	692, 864
TaiI	ACGT	2 cut(s)	416, 1145
TaqI	TCGA	2 cut(s)	795, 1056
TasI	AATT	6 cut(s)	93, 130, 536, 730, 766, 999
TatI	WGTACW	1 cut(s)	201
TfiI	GAWTC	1 cut(s)	968
Tru1I	TTAA	3 cut(s)	729, 945, 1002
Tru9I	TTAA	3 cut(s)	729, 945, 1002
TscAI	CASTG	3 cut(s)	292, 887, 1143
TseFI	GTSAC	4 cut(s)	136, 1059, 1138, 1164
TseI	GCWGC	3 cut(s)	917, 1178, 1181
Tsp45I	GTSAC	4 cut(s)	136, 1059, 1138, 1164
TspDTI	ATGAA	5 cut(s)	17, 227, 332, 348, 621
TspGWI	ACGGA	1 cut(s)	1074
TspRI	CASTG	3 cut(s)	292, 887, 1143
VspI	ATTAAT	2 cut(s)	945, 1002
XagI	CCTNNNNNAGG	1 cut(s)	993
XapI	RAATTY	1 cut(s)	93
XbaI	TCTAGA	2 cut(s)	823, 1157
XceI	RCATGY	1 cut(s)	938
XspI	CTAG	5 cut(s)	533, 824, 995, 1043, 1158
ZraI	GACGTC	1 cut(s)	1143
Zsp2I	ATGCAT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.