Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001673

Physical Location & Seq

Genomic Coordinates Reverse (-)

32007678 .. 32009807

Gene Structure 2130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g32720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2130 bp

ATGGCTTATCACTTATGCTCTTCGCCCTCTTCTCTCTTCCACAACCCCCGAACTCCCTCCCGCTCTCTCCCTTTTCCTTCCCCGACTAATTTTCGACTCAGAAGCTCTGCAATTCACACCCACGGACTCAGTTGTCCTCCGCTACAATTTCAGTCAACAACCTCTCTGCAAATACACCATGTTTCGTTGCAAGACCCGGTTGCACAAGAAGCCCAGAGCCCTAAAGACTCAGAAATTGAAAGTCGTCAGAGCCCAGATGGAAATTCCGGGTCTTTGTCGAAAAGCTACGTCTGGGTTAATCCCAGGAGCCCCAGAGCTTCACAGCTGCGGCAGAAGTCCTACGATTCCAGGTACGCTTCTTTGGTGAAAGTAGCTGAGTATTTGAACTCTTGTACTCCGAATGAAAGTGATGTTTCTGAAGCTTTAAGGGGTTTAGGGGATAATATTTTGGAACAAGACGCTGTGGTTGTTCTTAATAACATGAACAATCCGGAAAATGCTTTGCTTGCGCTTAACTACTTTCACAAGAGATTGAAACCCAAGAGGGAGGTGATTTTGTACAATGTGACTTTGAAAGTGTGTAGGAAGGGTAAGGATTTGGATAGAGCAGAGAAGCTGTTCGATCATCTACTCCAGAGGGGTGTTAAACCCGATAATGTTACCTTTTCGACTATGATTAGTTGTGCTAGGATGTGTTCTTTGCCTGATAAGGCTGTGGAGTGGTTTGAGAAGATGCCCAGTTTTGGGTGTAATCCGGATGATGTTACCTATTCGGCTATGATTGACGCCTATGGGCGTGCCGGTAAGGTTGAAATGGCTTTCAGTTTATATGACCGAGCTAGGACTGAGAAGTGGCGCATCGATCCCGTGACGTTTTCTACATTGATCAAAATTCACGGGCAATCGGGGAATTTTGATGGGTGCTTGAATGTTTATGAGGAAATGAAAGCTATAGGGGCTAAGCCAAACTTGGTTATTTATAACACTTTGTTGGATGCCATGGGAAGAGCTAGGAGGCCTTGGCAGGCCAAGAAAATTTACCGAGAGATGATCAGCAGAGAGCTTTCACCAAATTGGGTGACCTATGCGTCTCTTTTAAGGGCCTATGGTAGAGCTCGCTACCGTGATGATGCTCTTAATGTTTATAAAGAGATGAAGGAGAAGGGACTGGAGTTAAATGTAATTCTTTATAATACCCTTTTAGCTATGTGTGCTGATGTTGGTTACACTGACGAAGCCGTTGACATTTTTGAAGAAATGAAGAGTTCTGAAACTTTGAAGCCCGACAGTTGGACCTTTTCATCCATGATCACCGTATATTCCTGTAGCGGGAAAGTCACAGAGGCAGAAGCAACATTGAATGAGATGTTGGAGGCTGGTTTTGAGCCTAATATCTTTATTTTGACATCACTCATCCAATGCTACGGGAAGGCAAAACGCACTGATGACGTTGTTAGGATATTCAATCAACTCCTAGATTTGGGTATAACACCAGATGAGCGTTTCTGTGGTTGTCTCCTGAATGTGATGACTCAAACACCAAAGGAAGAACTTTGCAAGCTTGCCAATTGCATTGAGAGGGCTGATGAAAAACTAGGGTATGTGGTAAGACTTTTGGTGGAGAAGCAAGACAGTAGTGAAAACTTCAAGAACGAAGCATCAGAACTTTTCAACTCAATCGGTTCGGATGTAAAGAAAGCTTATTGTAATTGCCTGATTGATCTTTGTGTGAACCTCGATCTATTGGAGAGAGCCTGTGAGCTACTAGACTTGGGGATTACACTTCAGATATACATAGGTTTACAGTCAAGGTCTCAAACCCAGTGGTCTCTGTATCTCAAAGGTCTGTCTCTTGGGGCTGCTCTGACTGCATTACATGTTTGGATCAATGACCTGTCTCAGGTATTGGACTCTGCTGAGGAGCTTCCGCCGTTGCTTGGAATCAATACTGGACATGGGAAACATAAGTATTCAGACAAGGGTCTGGCGAGTGTATTTGAGTCCCATTTGAAGGAATTAAATGCTCCATTCCATGAGGCCCCAGACAAGGCTGGCTGGTTTTTGACAACAAAGGTTGCAATCAAGTCATGGTTGGAGTCTAGGAGTTCATCTGAGTTAGTTACTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031425 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

710

Amino Acids

79.7

Weight (kDa)

6.22

Isoelectric Point (pI)

44.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	184 - 228	8.1e-09	PPR repeat family
TPR_24	PF23276	234 - 350	6.1e-07	Fungal tetratrico peptide repeats
PPR_2	PF13041	235 - 264	1.6e-06	PPR repeat family
PPR_1	PF12854	249 - 279	3.9e-08	PPR repeat
PPR_2	PF13041	255 - 297	5.3e-08	PPR repeat family
PPR	PF01535	255 - 279	8.5e-07	PPR repeat
PPR_long	PF17177	272 - 368	3.3e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	286 - 335	4.3e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	322 - 369	3.4e-11	PPR repeat family
PPR_3	PF13812	345 - 405	2.1e-12	Pentatricopeptide repeat domain
PPR_long	PF17177	377 - 516	3.4e-13	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	384 - 440	5.5e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	393 - 440	3.3e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0001673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16390
fragaria_vesca	FvH4_3g00440 FvH4_3g00470
malus_domestica	MD00G1221000.v1.1 MD05G1360400.v1.1 MD08G1234300.v1.1 MD10G1337400.v1.1 MD10G1337800.v1.1 MD10G1338000.v1.1
prunus_persica	Prupe.3G138500_v2.0.a1 Prupe.4G005200_v2.0.a1
pyrus_communis	pycom05g32720 pycom10g28680 pycom10g28700 pycom10g28720 pycom10g28750
rosa_chinensis	RchiOBHm_Chr1g0364151 RchiOBHm_Chr2g0155431 RchiOBHm_Chr4g0402181 RchiOBHm_Chr5g0000631 RchiOBHm_Chr6g0271321
rosa_laevigata	RLG00000004254 RLG00000013858 RLG00000028931 RLG00000030883
rosa_multiflora	Rmu_co8004710.1_g000001 Rmu_co8021096.1_g000001 Rmu_co8161794.1_g000001 Rmu_sc0000795.1_g000110 Rmu_sc0001141.1_g000016 Rmu_sc0003662.1_g000007 Rmu_sc0003699.1_g000009 Rmu_sc0006695.1_g000081 Rmu_sc0010255.1_g000007 Rmu_sc0011992.1_g000014 Rmu_sc0016929.1_g000002 Rmu_sc0017523.1_g000008 Rmu_sc0021532.1_g000001 Rmu_sc0029877.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001310 Rroxscaffold_1G00075570 Rroxscaffold_4G00324290
rosa_rugosa	Rorug04G0385500 Rorug07G0309300.1
rosa_samantha	Rh5AG005400 Rh5BG007000 Rh5CG005700 Rh5DG005600
rosa_wichuraiana	Rw5G000530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	981, 1146, 1191
AasI	GACNNNNNNGTC	2 cut(s)	132, 1087
AccBSI	CCGCTC	1 cut(s)	63
AccIII	TCCGGA	2 cut(s)	490, 754
AciI	CCGC	5 cut(s)	61, 140, 328, 1329, 1928
AclWI	GGATC	2 cut(s)	857, 1892
AcsI	RAATTY	4 cut(s)	262, 891, 910, 1035
AcuI	CTGAAG	2 cut(s)	438, 1769
AcyI	GRCGYC	1 cut(s)	786
AfaI	GTAC	3 cut(s)	353, 394, 560
AfiI	CCNNNNNNNGG	9 cut(s)	743, 744, 1290, 1329, 1480, 1900, 1937, 2011, 2047
AflIII	ACRYGT	1 cut(s)	1876
AjnI	CCWGG	2 cut(s)	302, 347
AjuI	GAANNNNNNNTTGG	2 cut(s)	1352, 1384
Alw21I	GWGCWC	1 cut(s)	1117
Alw26I	GTCTC	6 cut(s)	1095, 1520, 1818, 1833, 1854, 1902
AlwI	GGATC	2 cut(s)	857, 1892
Aor13HI	TCCGGA	2 cut(s)	490, 754
AoxI	GGCC	4 cut(s)	1016, 1026, 1101, 2037
ApeKI	GCWGC	2 cut(s)	325, 1859
ApoI	RAATTY	4 cut(s)	262, 891, 910, 1035
Asp700I	GAANNNNTTC	1 cut(s)	617
AspLEI	GCGC	2 cut(s)	511, 858
AspS9I	GGNCC	3 cut(s)	1101, 1293, 2038
AsuC2I	CCSGG	2 cut(s)	197, 268
AsuHPI	GGTGA	5 cut(s)	376, 562, 1059, 1090, 1303
AvaII	GGWCC	1 cut(s)	1293
BanII	GRGCYC	4 cut(s)	221, 254, 311, 1117
Bbv12I	GWGCWC	1 cut(s)	1117
BbvCI	CCTCAGC	1 cut(s)	1917
BbvI	GCAGC	2 cut(s)	312, 1846
BccI	CCATC	2 cut(s)	251, 911
BceAI	ACGGC	2 cut(s)	1223, 1915
BciT130I	CCWGG	2 cut(s)	304, 349
BclI	TGATCA	3 cut(s)	885, 1050, 1308
BcnI	CCSGG	2 cut(s)	197, 268
BcoDI	GTCTC	6 cut(s)	1095, 1520, 1818, 1833, 1854, 1902
BfaI	CTAG	7 cut(s)	687, 840, 1011, 1475, 1595, 1766, 2100
BfmI	CTRYAG	2 cut(s)	951, 1324
BisI	GCNGC	3 cut(s)	326, 329, 1860
BlpI	GCTNAGC	1 cut(s)	960
BlsI	GCNGC	3 cut(s)	327, 330, 1861
Bme1390I	CCNGG	4 cut(s)	197, 268, 304, 349
Bme18I	GGWCC	1 cut(s)	1293
BmgT120I	GGNCC	3 cut(s)	1101, 1293, 2038
BmiI	GGNNCC	2 cut(s)	308, 2040
BmrFI	CCNGG	4 cut(s)	197, 268, 304, 349
BmrI	ACTGGG	2 cut(s)	732, 1816
BmsI	GCATC	5 cut(s)	723, 867, 985, 1120, 1667
BmuI	ACTGGG	2 cut(s)	732, 1816
BoxI	GACNNNNGTC	1 cut(s)	1980
BpmI	CTGGAG	2 cut(s)	617, 1190
Bpu10I	CCTNAGC	1 cut(s)	1917
Bpu1102I	GCTNAGC	1 cut(s)	960
BpuMI	CCSGG	2 cut(s)	197, 268
Bsa29I	ATCGAT	1 cut(s)	861
BsaHI	GRCGYC	1 cut(s)	786
BsaI	GGTCTC	2 cut(s)	1818, 1833
BsaJI	CCNNGG	4 cut(s)	121, 302, 999, 1019
BsaWI	WCCGGW	2 cut(s)	490, 754
Bsc4I	CCNNNNNNNGG	9 cut(s)	743, 744, 1290, 1329, 1480, 1900, 1937, 2011, 2047
Bse118I	RCCGGY	1 cut(s)	800
Bse1I	ACTGG	4 cut(s)	738, 1173, 1822, 1954
BseAI	TCCGGA	2 cut(s)	490, 754
BseBI	CCWGG	2 cut(s)	304, 349
BseCI	ATCGAT	1 cut(s)	861
BseDI	CCNNGG	4 cut(s)	121, 302, 999, 1019
BseGI	GGATG	6 cut(s)	696, 763, 1000, 1301, 1413, 1693
BseLI	CCNNNNNNNGG	9 cut(s)	743, 744, 1290, 1329, 1480, 1900, 1937, 2011, 2047
BseMII	CTCAG	8 cut(s)	112, 142, 243, 366, 837, 1908, 1913, 2103
BseNI	ACTGG	4 cut(s)	738, 1173, 1822, 1954
BseRI	GAGGAG	1 cut(s)	1934
BseXI	GCAGC	2 cut(s)	312, 1846
BshFI	GGCC	4 cut(s)	1018, 1028, 1103, 2039
BshVI	ATCGAT	1 cut(s)	861
BsiHKAI	GWGCWC	1 cut(s)	1117
BsiSI	CCGG	5 cut(s)	197, 267, 491, 755, 801
BslFI	GGGAC	2 cut(s)	1179, 1987
BslI	CCNNNNNNNGG	9 cut(s)	743, 744, 1290, 1329, 1480, 1900, 1937, 2011, 2047
BsmAI	GTCTC	6 cut(s)	1095, 1520, 1818, 1833, 1854, 1902
BsmBI	CGTCTC	1 cut(s)	1095
BsmFI	GGGAC	2 cut(s)	1179, 1987
BsnI	GGCC	4 cut(s)	1018, 1028, 1103, 2039
Bso31I	GGTCTC	2 cut(s)	1818, 1833
Bsp1286I	GDGCHC	4 cut(s)	221, 254, 311, 1117
Bsp13I	TCCGGA	2 cut(s)	490, 754
Bsp1407I	TGTACA	1 cut(s)	558
Bsp143I	GATC	8 cut(s)	622, 862, 885, 1050, 1308, 1720, 1738, 1884
Bsp1720I	GCTNAGC	1 cut(s)	960
Bsp19I	CCATGG	1 cut(s)	999
BspACI	CCGC	5 cut(s)	61, 140, 328, 1329, 1928
BspANI	GGCC	4 cut(s)	1018, 1028, 1103, 2039
BspCNI	CTCAG	8 cut(s)	111, 141, 242, 367, 838, 1909, 1912, 2104
BspDI	ATCGAT	1 cut(s)	861
BspEI	TCCGGA	2 cut(s)	490, 754
BspLI	GGNNCC	2 cut(s)	308, 2040
BspPI	GGATC	2 cut(s)	857, 1892
BspQI	GCTCTTC	2 cut(s)	25, 1000
BspTNI	GGTCTC	2 cut(s)	1818, 1833
BsrBI	CCGCTC	1 cut(s)	63
BsrFI	RCCGGY	1 cut(s)	800
BsrGI	TGTACA	1 cut(s)	558
BsrI	ACTGG	4 cut(s)	738, 1173, 1822, 1954
BssAI	RCCGGY	1 cut(s)	800
BssECI	CCNNGG	4 cut(s)	121, 302, 999, 1019
BssMI	GATC	8 cut(s)	622, 862, 885, 1050, 1308, 1720, 1738, 1884
BssNI	GRCGYC	1 cut(s)	786
BssT1I	CCWWGG	2 cut(s)	999, 1019
Bst2UI	CCWGG	2 cut(s)	304, 349
Bst4CI	ACNGT	5 cut(s)	1124, 1289, 1315, 1634, 1806
Bst6I	CTCTTC	5 cut(s)	25, 34, 41, 1000, 1256
BstACI	GRCGYC	1 cut(s)	786
BstAUI	TGTACA	1 cut(s)	558
BstC8I	GCNNGC	7 cut(s)	507, 798, 1026, 1117, 1559, 1563, 2053
BstDSI	CCRYGG	2 cut(s)	121, 999
BstEII	GGTNACC	1 cut(s)	1078
BstENI	CCTNNNNNAGG	1 cut(s)	1898
BstF5I	GGATG	6 cut(s)	696, 763, 1000, 1301, 1413, 1693
BstHHI	GCGC	2 cut(s)	511, 858
BstKTI	GATC	8 cut(s)	625, 865, 888, 1053, 1311, 1723, 1741, 1887
BstMAI	GTCTC	6 cut(s)	1095, 1520, 1818, 1833, 1854, 1902
BstMBI	GATC	8 cut(s)	622, 862, 885, 1050, 1308, 1720, 1738, 1884
BstMWI	GCNNNNNNNGC	5 cut(s)	209, 506, 956, 1211, 1868
BstNI	CCWGG	2 cut(s)	304, 349
BstNSI	RCATGY	1 cut(s)	1880
BstPAI	GACNNNNGTC	1 cut(s)	1980
BstPI	GGTNACC	1 cut(s)	1078
BstSCI	CCNGG	4 cut(s)	195, 266, 302, 347
BstSFI	CTRYAG	2 cut(s)	951, 1324
BstV1I	GCAGC	2 cut(s)	312, 1846
Bsu15I	ATCGAT	1 cut(s)	861
BsuRI	GGCC	4 cut(s)	1018, 1028, 1103, 2039
BsuTUI	ATCGAT	1 cut(s)	861
BtgI	CCRYGG	2 cut(s)	121, 999
BtsCI	GGATG	6 cut(s)	696, 763, 1000, 1301, 1413, 1693
BtsIMutI	CAGTG	3 cut(s)	1227, 1440, 1829
Cac8I	GCNNGC	7 cut(s)	507, 798, 1026, 1117, 1559, 1563, 2053
CfoI	GCGC	2 cut(s)	511, 858
Cfr10I	RCCGGY	1 cut(s)	800
Cfr13I	GGNCC	3 cut(s)	1101, 1293, 2038
ClaI	ATCGAT	1 cut(s)	861
CseI	GACGC	3 cut(s)	467, 794, 1077
Csp6I	GTAC	3 cut(s)	352, 393, 559
CspCI	CAANNNNNGTGG	2 cut(s)	1805, 1840
CviAII	CATG	8 cut(s)	179, 481, 1000, 1306, 1877, 1955, 2033, 2088
CviQI	GTAC	3 cut(s)	352, 393, 559
DpnI	GATC	8 cut(s)	624, 864, 887, 1052, 1310, 1722, 1740, 1886
DpnII	GATC	8 cut(s)	622, 862, 885, 1050, 1308, 1720, 1738, 1884
DrdI	GACNNNNNNGTC	2 cut(s)	132, 1087
DseDI	GACNNNNNNGTC	2 cut(s)	132, 1087
Eam1104I	CTCTTC	5 cut(s)	25, 34, 41, 1000, 1256
EarI	CTCTTC	5 cut(s)	25, 34, 41, 1000, 1256
EciI	GGCGGA	1 cut(s)	1917
Ecl136II	GAGCTC	1 cut(s)	1115
Eco130I	CCWWGG	2 cut(s)	999, 1019
Eco147I	AGGCCT	1 cut(s)	1018
Eco24I	GRGCYC	4 cut(s)	221, 254, 311, 1117
Eco31I	GGTCTC	2 cut(s)	1818, 1833
Eco47I	GGWCC	1 cut(s)	1293
Eco53kI	GAGCTC	1 cut(s)	1115
Eco57I	CTGAAG	2 cut(s)	438, 1769
Eco91I	GGTNACC	1 cut(s)	1078
EcoICRI	GAGCTC	1 cut(s)	1115
EcoNI	CCTNNNNNAGG	1 cut(s)	1898
EcoO109I	RGGNCCY	2 cut(s)	1101, 2038
EcoO65I	GGTNACC	1 cut(s)	1078
EcoRII	CCWGG	2 cut(s)	302, 347
EcoT14I	CCWWGG	2 cut(s)	999, 1019
EcoT38I	GRGCYC	4 cut(s)	221, 254, 311, 1117
ErhI	CCWWGG	2 cut(s)	999, 1019
Esp3I	CGTCTC	1 cut(s)	1095
FaeI	CATG	8 cut(s)	182, 484, 1003, 1309, 1880, 1958, 2036, 2091
FalI	AAGNNNNNCTT	2 cut(s)	953, 985
FaqI	GGGAC	2 cut(s)	1179, 1987
FatI	CATG	8 cut(s)	178, 480, 999, 1305, 1876, 1954, 2032, 2087
FauI	CCCGC	2 cut(s)	68, 1322
FbaI	TGATCA	3 cut(s)	885, 1050, 1308
Fnu4HI	GCNGC	3 cut(s)	326, 329, 1860
FokI	GGATG	6 cut(s)	703, 770, 1007, 1288, 1400, 1700
FriOI	GRGCYC	4 cut(s)	221, 254, 311, 1117
Fsp4HI	GCNGC	3 cut(s)	326, 329, 1860
FspBI	CTAG	7 cut(s)	687, 840, 1011, 1475, 1595, 1766, 2100
GlaI	GCGC	2 cut(s)	510, 857
GluI	GCNGC	3 cut(s)	326, 329, 1860
GsuI	CTGGAG	2 cut(s)	617, 1190
HaeIII	GGCC	4 cut(s)	1018, 1028, 1103, 2039
HapII	CCGG	5 cut(s)	197, 267, 491, 755, 801
HgaI	GACGC	3 cut(s)	467, 794, 1077
HhaI	GCGC	2 cut(s)	511, 858
Hin1I	GRCGYC	1 cut(s)	786
Hin1II	CATG	8 cut(s)	182, 484, 1003, 1309, 1880, 1958, 2036, 2091
Hin6I	GCGC	2 cut(s)	509, 856
HinP1I	GCGC	2 cut(s)	509, 856
HincII	GTYRAC	2 cut(s)	156, 1243
HindII	GTYRAC	2 cut(s)	156, 1243
HindIII	AAGCTT	3 cut(s)	420, 1559, 1698
HinfI	GANTC	9 cut(s)	96, 126, 227, 344, 1531, 1910, 1941, 2000, 2096
HpaII	CCGG	5 cut(s)	197, 267, 491, 755, 801
HphI	GGTGA	5 cut(s)	376, 562, 1059, 1090, 1303
Hpy166II	GTNNAC	4 cut(s)	156, 1243, 1732, 1802
Hpy188III	TCNNGA	5 cut(s)	491, 634, 755, 1519, 1648
Hpy8I	GTNNAC	4 cut(s)	156, 1243, 1732, 1802
HpyAV	CCTTC	6 cut(s)	87, 580, 1150, 1156, 1423, 2005
HpyCH4III	ACNGT	5 cut(s)	1124, 1289, 1315, 1634, 1806
HpyCH4IV	ACGT	3 cut(s)	288, 872, 1449
HpyCH4V	TGCA	8 cut(s)	110, 169, 190, 203, 1557, 1572, 1871, 2078
HpyF10VI	GCNNNNNNNGC	5 cut(s)	209, 506, 956, 1211, 1868
HpySE526I	ACGT	3 cut(s)	288, 872, 1449
Hsp92I	GRCGYC	1 cut(s)	786
Hsp92II	CATG	8 cut(s)	182, 484, 1003, 1309, 1880, 1958, 2036, 2091
HspAI	GCGC	2 cut(s)	509, 856
Kpn2I	TCCGGA	2 cut(s)	490, 754
Ksp22I	TGATCA	3 cut(s)	885, 1050, 1308
Kzo9I	GATC	8 cut(s)	622, 862, 885, 1050, 1308, 1720, 1738, 1884
LguI	GCTCTTC	2 cut(s)	25, 1000
LmnI	GCTCC	3 cut(s)	306, 1921, 2029
Lsp1109I	GCAGC	2 cut(s)	312, 1846
LweI	GCATC	5 cut(s)	723, 867, 985, 1120, 1667
MaeI	CTAG	7 cut(s)	687, 840, 1011, 1475, 1595, 1766, 2100
MaeII	ACGT	3 cut(s)	288, 872, 1449
MaeIII	GTNAC	8 cut(s)	565, 658, 763, 868, 1078, 1223, 1336, 2119
MalI	GATC	8 cut(s)	624, 864, 887, 1052, 1310, 1722, 1740, 1886
MbiI	CCGCTC	1 cut(s)	63
MboI	GATC	8 cut(s)	622, 862, 885, 1050, 1308, 1720, 1738, 1884
MboII	GAAGA	8 cut(s)	12, 21, 28, 742, 1017, 1265, 1273, 1559
MfeI	CAATTG	1 cut(s)	1567
MhlI	GDGCHC	4 cut(s)	221, 254, 311, 1117
MlyI	GAGTC	7 cut(s)	90, 120, 221, 1525, 1904, 2009, 2105
MmeI	TCCRAC	4 cut(s)	972, 1271, 1350, 2073
MroI	TCCGGA	2 cut(s)	490, 754
MroXI	GAANNNNTTC	1 cut(s)	617
MseI	TTAA	9 cut(s)	297, 425, 474, 513, 645, 1097, 1137, 1175, 2018
MspA1I	CMGCKG	1 cut(s)	325
MspI	CCGG	5 cut(s)	197, 267, 491, 755, 801
MspR9I	CCNGG	4 cut(s)	197, 268, 304, 349
MunI	CAATTG	1 cut(s)	1567
MvaI	CCWGG	2 cut(s)	304, 349
MwoI	GCNNNNNNNGC	5 cut(s)	209, 506, 956, 1211, 1868
NciI	CCSGG	2 cut(s)	197, 268
NcoI	CCATGG	1 cut(s)	999
NdeII	GATC	8 cut(s)	622, 862, 885, 1050, 1308, 1720, 1738, 1884
NlaIII	CATG	8 cut(s)	182, 484, 1003, 1309, 1880, 1958, 2036, 2091
NlaIV	GGNNCC	2 cut(s)	308, 2040
NmuCI	GTSAC	4 cut(s)	565, 868, 1078, 1336
NspI	RCATGY	1 cut(s)	1880
PceI	AGGCCT	1 cut(s)	1018
PciI	ACATGT	1 cut(s)	1876
PciSI	GCTCTTC	2 cut(s)	25, 1000
PdmI	GAANNNNTTC	1 cut(s)	617
PfeI	GAWTC	2 cut(s)	344, 1941
PkrI	GCNGC	3 cut(s)	327, 330, 1861
PleI	GAGTC	7 cut(s)	90, 120, 221, 1525, 1904, 2008, 2104
PpsI	GAGTC	7 cut(s)	90, 120, 221, 1525, 1904, 2008, 2104
PscI	ACATGT	1 cut(s)	1876
PshAI	GACNNNNGTC	1 cut(s)	1980
PsiI	TTATAA	3 cut(s)	981, 1146, 1191
Psp124BI	GAGCTC	1 cut(s)	1117
Psp6I	CCWGG	2 cut(s)	302, 347
PspEI	GGTNACC	1 cut(s)	1078
PspGI	CCWGG	2 cut(s)	302, 347
PspN4I	GGNNCC	2 cut(s)	308, 2040
PspPI	GGNCC	3 cut(s)	1101, 1293, 2038
PvuII	CAGCTG	1 cut(s)	325
RsaI	GTAC	3 cut(s)	353, 394, 560
RsaNI	GTAC	3 cut(s)	352, 393, 559
SacI	GAGCTC	1 cut(s)	1117
SapI	GCTCTTC	2 cut(s)	25, 1000
SaqAI	TTAA	9 cut(s)	297, 425, 474, 513, 645, 1097, 1137, 1175, 2018
SatI	GCNGC	3 cut(s)	326, 329, 1860
Sau3AI	GATC	8 cut(s)	622, 862, 885, 1050, 1308, 1720, 1738, 1884
Sau96I	GGNCC	3 cut(s)	1101, 1293, 2038
SchI	GAGTC	7 cut(s)	90, 120, 221, 1525, 1904, 2009, 2105
ScrFI	CCNGG	4 cut(s)	197, 268, 304, 349
SduI	GDGCHC	4 cut(s)	221, 254, 311, 1117
SfaNI	GCATC	5 cut(s)	723, 867, 985, 1120, 1667
SfcI	CTRYAG	2 cut(s)	951, 1324
SinI	GGWCC	1 cut(s)	1293
SseBI	AGGCCT	1 cut(s)	1018
SsiI	CCGC	5 cut(s)	61, 140, 328, 1329, 1928
SspI	AATATT	1 cut(s)	445
SspMI	CTAG	7 cut(s)	687, 840, 1011, 1475, 1595, 1766, 2100
SstI	GAGCTC	1 cut(s)	1117
StuI	AGGCCT	1 cut(s)	1018
StyD4I	CCNGG	4 cut(s)	195, 266, 302, 347
StyI	CCWWGG	2 cut(s)	999, 1019
TaaI	ACNGT	5 cut(s)	1124, 1289, 1315, 1634, 1806
TaiI	ACGT	3 cut(s)	291, 875, 1452
TaqI	TCGA	6 cut(s)	94, 278, 621, 668, 861, 1737
TaqII	GACCGA	1 cut(s)	849
TatI	WGTACW	2 cut(s)	392, 558
TauI	GCSGC	1 cut(s)	331
TfiI	GAWTC	2 cut(s)	344, 1941
Tru1I	TTAA	9 cut(s)	297, 425, 474, 513, 645, 1097, 1137, 1175, 2018
Tru9I	TTAA	9 cut(s)	297, 425, 474, 513, 645, 1097, 1137, 1175, 2018
TscAI	CASTG	3 cut(s)	1234, 1447, 1829
TseFI	GTSAC	4 cut(s)	565, 868, 1078, 1336
TseI	GCWGC	2 cut(s)	325, 1859
Tsp45I	GTSAC	4 cut(s)	565, 868, 1078, 1336
TspDTI	ATGAA	8 cut(s)	417, 497, 959, 1169, 1274, 1290, 1602, 2097
TspGWI	ACGGA	1 cut(s)	138
TspRI	CASTG	3 cut(s)	1234, 1447, 1829
VpaK11BI	GGWCC	1 cut(s)	1293
XagI	CCTNNNNNAGG	1 cut(s)	1898
XapI	RAATTY	4 cut(s)	262, 891, 910, 1035
XceI	RCATGY	1 cut(s)	1880
XmnI	GAANNNNTTC	1 cut(s)	617
XspI	CTAG	7 cut(s)	687, 840, 1011, 1475, 1595, 1766, 2100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.