Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016929.1

Orthogroup ID

OG0001673

Physical Location & Seq

Genomic Coordinates Reverse (-)

2497 .. 3727

Gene Structure 1231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016929.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

atgggcaaggtgtggtttgctcccgatgatccctccctcccacccaccgccttggaaagggcttatcccccaccttttaccacctctgattatgccttccattccgactacccaaacttctatcccaatcatcaaggaccgactgcgactgttatcaatggctacacatttccaccacaattcccttacctcaaccaaagtcatttgcccaccaaccaactcatttacccacactttcaatctatggtcgaaccaaagtttccttcctttcaaccacagtacaacatgaatccttcaattccaacctttcagtcaccctcagtccccacctttgtgccccaactccaatttacatatcccaaacctctatcgtctcttcattcaatgggtgactgtgagcttccagctctaatcacgggtcggatccaaaccctgccctctttctcttcttcatcatctgactcacaaacccaccttgaagatgcaacaaacccatcttctctgtcgccaatttctgatgttccggagcaaaaggaggttctgcactctaagcccgtcgtcttcaccctcatcaatgagctcgagcagcttcgcaggcccttctcccttgccgtcgcaggggaggtcagcctggcttcaccgagccagaatcgcgatgcaacaggcaaacctgacggcgtcgacctcgcggtcctagatgagaacttgaccgcctttcagttgctccaggacttgaccgacgaggacactgtggatgagaacaacgagcccgctccaatcctaatgaatgcgcttgtcgacaacaacgatccagacggttccacttatcaccagtctccacctcaaattggaggagcgtattggacgagcttgagtttagtggagattctagtgtcagttattaaagcattagagtgtcatccattatcagttgttagaattgatgagtgcttgccttcgcttgattatgttctgattgttgagaagaatgagaagttttcatgtcatagtcctaccatgaattctgtgaattgcttggagagtgttcagcttacgcaacatattccttctgccactggtttgcacctgccccatgtgtccctctatatgttataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

BES1_N Glyco_hydro_14

Protein Analysis

371

Amino Acids

40.99

Weight (kDa)

4.6

Isoelectric Point (pI)

58.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16390
fragaria_vesca	FvH4_3g00440 FvH4_3g00470
malus_domestica	MD00G1221000.v1.1 MD05G1360400.v1.1 MD08G1234300.v1.1 MD10G1337400.v1.1 MD10G1337800.v1.1 MD10G1338000.v1.1
prunus_persica	Prupe.3G138500_v2.0.a1 Prupe.4G005200_v2.0.a1
pyrus_communis	pycom05g32720 pycom10g28680 pycom10g28700 pycom10g28720 pycom10g28750
rosa_chinensis	RchiOBHm_Chr1g0364151 RchiOBHm_Chr2g0155431 RchiOBHm_Chr4g0402181 RchiOBHm_Chr5g0000631 RchiOBHm_Chr6g0271321
rosa_laevigata	RLG00000004254 RLG00000013858 RLG00000028931 RLG00000030883
rosa_multiflora	Rmu_co8004710.1_g000001 Rmu_co8021096.1_g000001 Rmu_co8161794.1_g000001 Rmu_sc0000795.1_g000110 Rmu_sc0001141.1_g000016 Rmu_sc0003662.1_g000007 Rmu_sc0003699.1_g000009 Rmu_sc0006695.1_g000081 Rmu_sc0010255.1_g000007 Rmu_sc0011992.1_g000014 Rmu_sc0016929.1_g000002 Rmu_sc0017523.1_g000008 Rmu_sc0021532.1_g000001 Rmu_sc0029877.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001310 Rroxscaffold_1G00075570 Rroxscaffold_4G00324290
rosa_rugosa	Rorug04G0385500 Rorug07G0309300.1
rosa_samantha	Rh5AG005400 Rh5BG007000 Rh5CG005700 Rh5DG005600
rosa_wichuraiana	Rw5G000530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1114
AarI	CACCTGC	1 cut(s)	1095
AasI	GACNNNNNNGTC	1 cut(s)	689
Acc36I	ACCTGC	1 cut(s)	1095
AccBSI	CCGCTC	1 cut(s)	773
AccI	GTMKAC	2 cut(s)	681, 798
AccII	CGCG	2 cut(s)	654, 689
AccIII	TCCGGA	1 cut(s)	523
AciI	CCGC	4 cut(s)	48, 689, 711, 771
AclWI	GGATC	4 cut(s)	23, 418, 431, 803
AcsI	RAATTY	1 cut(s)	1021
AcyI	GRCGYC	1 cut(s)	678
AfaI	GTAC	1 cut(s)	281
AfiI	CCNNNNNNNGG	3 cut(s)	57, 618, 848
AgsI	TTSAA	5 cut(s)	239, 272, 297, 384, 479
AjnI	CCWGG	2 cut(s)	630, 726
AjuI	GAANNNNNNNTTGG	2 cut(s)	247, 279
AleI	CACNNNNGTG	1 cut(s)	332
AluBI	AGCT	6 cut(s)	400, 407, 580, 589, 870, 1051
AluI	AGCT	6 cut(s)	400, 407, 580, 589, 870, 1051
Alw21I	GWGCWC	1 cut(s)	582
Alw26I	GTCTC	2 cut(s)	378, 840
AlwI	GGATC	4 cut(s)	23, 418, 431, 803
Ama87I	CYCGRG	1 cut(s)	581
Aor13HI	TCCGGA	1 cut(s)	523
AoxI	GGCC	1 cut(s)	596
ApeKI	GCWGC	1 cut(s)	586
ApoI	RAATTY	1 cut(s)	1021
AspLEI	GCGC	1 cut(s)	793
AspS9I	GGNCC	3 cut(s)	137, 597, 691
AsuHPI	GGTGA	5 cut(s)	306, 401, 556, 630, 821
AvaI	CYCGRG	1 cut(s)	581
AvaII	GGWCC	2 cut(s)	137, 691
BaeGI	GKGCMC	1 cut(s)	339
BamHI	GGATCC	1 cut(s)	423
BanII	GRGCYC	2 cut(s)	582, 771
BbsI	GAAGAC	1 cut(s)	553
Bbv12I	GWGCWC	1 cut(s)	582
BbvI	GCAGC	1 cut(s)	598
BccI	CCATC	1 cut(s)	502
BceAI	ACGGC	2 cut(s)	596, 691
BciT130I	CCWGG	2 cut(s)	632, 728
BcoDI	GTCTC	2 cut(s)	378, 840
BfaI	CTAG	2 cut(s)	695, 890
BfuAI	ACCTGC	1 cut(s)	1095
BisI	GCNGC	1 cut(s)	587
BlsI	GCNGC	1 cut(s)	588
Bme1390I	CCNGG	2 cut(s)	632, 728
Bme18I	GGWCC	2 cut(s)	137, 691
BmeT110I	CYCGRG	1 cut(s)	581
BmgT120I	GGNCC	3 cut(s)	137, 597, 691
BmiI	GGNNCC	2 cut(s)	425, 820
BmrFI	CCNGG	2 cut(s)	632, 728
BmsI	GCATC	2 cut(s)	472, 646
BpiI	GAAGAC	1 cut(s)	553
BpmI	CTGGAG	1 cut(s)	710
BpuEI	CTTGAG	1 cut(s)	892
BsaHI	GRCGYC	1 cut(s)	678
BsaJI	CCNNGG	1 cut(s)	51
BsaWI	WCCGGW	1 cut(s)	523
Bsc4I	CCNNNNNNNGG	3 cut(s)	57, 618, 848
Bse1I	ACTGG	2 cut(s)	832, 1081
BseAI	TCCGGA	1 cut(s)	523
BseBI	CCWGG	2 cut(s)	632, 728
BseDI	CCNNGG	1 cut(s)	51
BseGI	GGATG	2 cut(s)	760, 919
BseLI	CCNNNNNNNGG	3 cut(s)	57, 618, 848
BseMII	CTCAG	1 cut(s)	333
BseNI	ACTGG	2 cut(s)	832, 1081
BseRI	GAGGAG	1 cut(s)	867
BseSI	GKGCMC	1 cut(s)	339
BseXI	GCAGC	1 cut(s)	598
BsgI	GTGCAG	1 cut(s)	527
Bsh1236I	CGCG	2 cut(s)	654, 689
BshFI	GGCC	1 cut(s)	598
BsiHKAI	GWGCWC	1 cut(s)	582
BsiHKCI	CYCGRG	1 cut(s)	581
BsiSI	CCGG	1 cut(s)	524
BslFI	GGGAC	2 cut(s)	308, 1084
BslI	CCNNNNNNNGG	3 cut(s)	57, 618, 848
BsmAI	GTCTC	2 cut(s)	378, 840
BsmBI	CGTCTC	1 cut(s)	378
BsmFI	GGGAC	2 cut(s)	308, 1084
BsmI	GAATGC	1 cut(s)	793
BsnI	GGCC	1 cut(s)	598
BsoBI	CYCGRG	1 cut(s)	581
Bsp1286I	GDGCHC	3 cut(s)	339, 582, 771
Bsp13I	TCCGGA	1 cut(s)	523
Bsp143I	GATC	3 cut(s)	28, 423, 808
Bsp68I	TCGCGA	1 cut(s)	654
BspACI	CCGC	4 cut(s)	48, 689, 711, 771
BspANI	GGCC	1 cut(s)	598
BspCNI	CTCAG	1 cut(s)	332
BspEI	TCCGGA	1 cut(s)	523
BspFNI	CGCG	2 cut(s)	654, 689
BspLI	GGNNCC	2 cut(s)	425, 820
BspMI	ACCTGC	1 cut(s)	1095
BspPI	GGATC	4 cut(s)	23, 418, 431, 803
BsrBI	CCGCTC	1 cut(s)	773
BsrI	ACTGG	2 cut(s)	832, 1081
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	3 cut(s)	28, 423, 808
BssNI	GRCGYC	1 cut(s)	678
BssT1I	CCWWGG	1 cut(s)	51
Bst2UI	CCWGG	2 cut(s)	632, 728
Bst4CI	ACNGT	5 cut(s)	151, 279, 395, 751, 818
Bst6I	CTCTTC	2 cut(s)	381, 451
BstACI	GRCGYC	1 cut(s)	678
BstC8I	GCNNGC	3 cut(s)	596, 771, 953
BstDEI	CTNAG	2 cut(s)	319, 549
BstENI	CCTNNNNNAGG	1 cut(s)	55
BstF5I	GGATG	2 cut(s)	760, 919
BstFNI	CGCG	2 cut(s)	654, 689
BstHHI	GCGC	1 cut(s)	793
BstKTI	GATC	3 cut(s)	31, 426, 811
BstMAI	GTCTC	2 cut(s)	378, 840
BstMBI	GATC	3 cut(s)	28, 423, 808
BstMWI	GCNNNNNNNGC	4 cut(s)	550, 586, 595, 651
BstNI	CCWGG	2 cut(s)	632, 728
BstSCI	CCNGG	2 cut(s)	630, 726
BstSLI	GKGCMC	1 cut(s)	339
BstUI	CGCG	2 cut(s)	654, 689
BstV1I	GCAGC	1 cut(s)	598
BstV2I	GAAGAC	1 cut(s)	553
BstX2I	RGATCY	1 cut(s)	423
BstXI	CCANNNNNNTGG	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	423
BsuRI	GGCC	1 cut(s)	598
BtgZI	GCGATG	1 cut(s)	669
BtsCI	GGATG	2 cut(s)	760, 919
BtsIMutI	CAGTG	2 cut(s)	747, 1074
BtuMI	TCGCGA	1 cut(s)	654
BveI	ACCTGC	1 cut(s)	1095
Cac8I	GCNNGC	3 cut(s)	596, 771, 953
CfoI	GCGC	1 cut(s)	793
Cfr13I	GGNCC	3 cut(s)	137, 597, 691
CseI	GACGC	1 cut(s)	667
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	4 cut(s)	286, 1002, 1018, 1094
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	2 cut(s)	319, 549
DpnI	GATC	3 cut(s)	30, 425, 810
DpnII	GATC	3 cut(s)	28, 423, 808
DrdI	GACNNNNNNGTC	1 cut(s)	689
DseDI	GACNNNNNNGTC	1 cut(s)	689
Eam1104I	CTCTTC	2 cut(s)	381, 451
EarI	CTCTTC	2 cut(s)	381, 451
Ecl136II	GAGCTC	1 cut(s)	580
Eco130I	CCWWGG	1 cut(s)	51
Eco24I	GRGCYC	2 cut(s)	582, 771
Eco47I	GGWCC	2 cut(s)	137, 691
Eco53kI	GAGCTC	1 cut(s)	580
Eco88I	CYCGRG	1 cut(s)	581
EcoICRI	GAGCTC	1 cut(s)	580
EcoNI	CCTNNNNNAGG	1 cut(s)	55
EcoO109I	RGGNCCY	1 cut(s)	597
EcoRI	GAATTC	1 cut(s)	1021
EcoRII	CCWGG	2 cut(s)	630, 726
EcoT14I	CCWWGG	1 cut(s)	51
EcoT38I	GRGCYC	2 cut(s)	582, 771
ErhI	CCWWGG	1 cut(s)	51
Esp3I	CGTCTC	1 cut(s)	378
FaeI	CATG	4 cut(s)	289, 1005, 1021, 1097
FaqI	GGGAC	2 cut(s)	308, 1084
FatI	CATG	4 cut(s)	285, 1001, 1017, 1093
FauI	CCCGC	1 cut(s)	778
FblI	GTMKAC	2 cut(s)	681, 798
Fnu4HI	GCNGC	1 cut(s)	587
FokI	GGATG	2 cut(s)	767, 906
FriOI	GRGCYC	2 cut(s)	582, 771
Fsp4HI	GCNGC	1 cut(s)	587
FspBI	CTAG	2 cut(s)	695, 890
GlaI	GCGC	1 cut(s)	792
GluI	GCNGC	1 cut(s)	587
GsuI	CTGGAG	1 cut(s)	710
HaeIII	GGCC	1 cut(s)	598
HapII	CCGG	1 cut(s)	524
HgaI	GACGC	1 cut(s)	667
HhaI	GCGC	1 cut(s)	793
Hin1I	GRCGYC	1 cut(s)	678
Hin1II	CATG	4 cut(s)	289, 1005, 1021, 1097
Hin6I	GCGC	1 cut(s)	791
HinP1I	GCGC	1 cut(s)	791
HincII	GTYRAC	2 cut(s)	682, 799
HindII	GTYRAC	2 cut(s)	682, 799
HinfI	GANTC	4 cut(s)	289, 461, 649, 886
HpaII	CCGG	1 cut(s)	524
HphI	GGTGA	5 cut(s)	306, 401, 556, 630, 821
Hpy166II	GTNNAC	2 cut(s)	682, 799
Hpy188I	TCNGA	6 cut(s)	88, 106, 423, 460, 517, 975
Hpy188III	TCNNGA	4 cut(s)	23, 524, 653, 812
Hpy8I	GTNNAC	2 cut(s)	682, 799
Hpy99I	CGWCG	4 cut(s)	560, 617, 683, 743
HpyAV	CCTTC	6 cut(s)	106, 273, 303, 610, 966, 1077
HpyCH4III	ACNGT	5 cut(s)	151, 279, 395, 751, 818
HpyCH4V	TGCA	4 cut(s)	485, 544, 659, 1084
HpyF10VI	GCNNNNNNNGC	4 cut(s)	550, 586, 595, 651
HpyF3I	CTNAG	2 cut(s)	319, 549
Hsp92I	GRCGYC	1 cut(s)	678
Hsp92II	CATG	4 cut(s)	289, 1005, 1021, 1097
HspAI	GCGC	1 cut(s)	791
Kpn2I	TCCGGA	1 cut(s)	523
Kzo9I	GATC	3 cut(s)	28, 423, 808
LmnI	GCTCC	5 cut(s)	25, 526, 729, 778, 854
Lsp1109I	GCAGC	1 cut(s)	598
LweI	GCATC	2 cut(s)	472, 646
MaeI	CTAG	2 cut(s)	695, 890
MaeIII	GTNAC	2 cut(s)	312, 389
MalI	GATC	3 cut(s)	30, 425, 810
MbiI	CCGCTC	1 cut(s)	773
MboI	GATC	3 cut(s)	28, 423, 808
MboII	GAAGA	7 cut(s)	368, 438, 441, 489, 491, 553, 997
MflI	RGATCY	1 cut(s)	423
MhlI	GDGCHC	3 cut(s)	339, 582, 771
MluCI	AATT	8 cut(s)	179, 297, 347, 510, 846, 939, 1021, 1030
MlyI	GAGTC	1 cut(s)	455
MmeI	TCCRAC	3 cut(s)	129, 326, 401
MroI	TCCGGA	1 cut(s)	523
MseI	TTAA	1 cut(s)	903
MslI	CAYNNNNRTG	2 cut(s)	332, 913
MspI	CCGG	1 cut(s)	524
MspR9I	CCNGG	2 cut(s)	632, 728
Mva1269I	GAATGC	1 cut(s)	793
MvaI	CCWGG	2 cut(s)	632, 728
MvnI	CGCG	2 cut(s)	654, 689
MwoI	GCNNNNNNNGC	4 cut(s)	550, 586, 595, 651
NdeII	GATC	3 cut(s)	28, 423, 808
NlaIII	CATG	4 cut(s)	289, 1005, 1021, 1097
NlaIV	GGNNCC	2 cut(s)	425, 820
NmuCI	GTSAC	2 cut(s)	312, 389
NruI	TCGCGA	1 cut(s)	654
OliI	CACNNNNGTG	1 cut(s)	332
PaeR7I	CTCGAG	1 cut(s)	581
PaqCI	CACCTGC	1 cut(s)	1095
PcsI	WCGNNNNNNNCGW	1 cut(s)	804
PctI	GAATGC	1 cut(s)	793
PfeI	GAWTC	3 cut(s)	289, 649, 886
PflFI	GACNNNGTC	1 cut(s)	677
PfoI	TCCNGGA	1 cut(s)	726
PkrI	GCNGC	1 cut(s)	588
PleI	GAGTC	1 cut(s)	455
PpsI	GAGTC	1 cut(s)	455
PsiI	TTATAA	1 cut(s)	1114
Psp124BI	GAGCTC	1 cut(s)	582
Psp6I	CCWGG	2 cut(s)	630, 726
PspGI	CCWGG	2 cut(s)	630, 726
PspN4I	GGNNCC	2 cut(s)	425, 820
PspPI	GGNCC	3 cut(s)	137, 597, 691
PspXI	VCTCGAGB	1 cut(s)	581
PsuI	RGATCY	1 cut(s)	423
PsyI	GACNNNGTC	1 cut(s)	677
RruI	TCGCGA	1 cut(s)	654
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
RseI	CAYNNNNRTG	2 cut(s)	332, 913
SacI	GAGCTC	1 cut(s)	582
SalI	GTCGAC	2 cut(s)	680, 797
SaqAI	TTAA	1 cut(s)	903
SatI	GCNGC	1 cut(s)	587
Sau3AI	GATC	3 cut(s)	28, 423, 808
Sau96I	GGNCC	3 cut(s)	137, 597, 691
SchI	GAGTC	1 cut(s)	455
ScrFI	CCNGG	2 cut(s)	632, 728
SduI	GDGCHC	3 cut(s)	339, 582, 771
SfaNI	GCATC	2 cut(s)	472, 646
Sfr274I	CTCGAG	1 cut(s)	581
SinI	GGWCC	2 cut(s)	137, 691
SlaI	CTCGAG	1 cut(s)	581
SmiMI	CAYNNNNRTG	2 cut(s)	332, 913
SmlI	CTYRAG	2 cut(s)	581, 871
SmoI	CTYRAG	2 cut(s)	581, 871
Sse9I	AATT	8 cut(s)	179, 297, 347, 510, 846, 939, 1021, 1030
SsiI	CCGC	4 cut(s)	48, 689, 711, 771
SspMI	CTAG	2 cut(s)	695, 890
SstI	GAGCTC	1 cut(s)	582
StyD4I	CCNGG	2 cut(s)	630, 726
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	5 cut(s)	151, 279, 395, 751, 818
TaqI	TCGA	4 cut(s)	249, 582, 681, 798
TaqII	GACCGA	2 cut(s)	154, 752
TasI	AATT	8 cut(s)	179, 297, 347, 510, 846, 939, 1021, 1030
TatI	WGTACW	1 cut(s)	279
TfiI	GAWTC	3 cut(s)	289, 649, 886
Tru1I	TTAA	1 cut(s)	903
Tru9I	TTAA	1 cut(s)	903
TscAI	CASTG	2 cut(s)	754, 1081
TseFI	GTSAC	2 cut(s)	312, 389
TseI	GCWGC	1 cut(s)	586
Tsp45I	GTSAC	2 cut(s)	312, 389
TspDTI	ATGAA	6 cut(s)	302, 368, 441, 800, 990, 1034
TspRI	CASTG	2 cut(s)	754, 1081
Tth111I	GACNNNGTC	1 cut(s)	677
VpaK11BI	GGWCC	2 cut(s)	137, 691
XagI	CCTNNNNNAGG	1 cut(s)	55
XapI	RAATTY	1 cut(s)	1021
XhoI	CTCGAG	1 cut(s)	581
XmiI	GTMKAC	2 cut(s)	681, 798
XspI	CTAG	2 cut(s)	695, 890

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.