Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001673

Physical Location & Seq

Genomic Coordinates Forward (+)

30281507 .. 30284776

Gene Structure 3270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028931

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGATGACCATATATTCCTGTAGTGGGAAAGTCTCAGAGGCAAAGAGAACGTTGAATGAGATGATGGAAGCTGGTTTCCAGCTTAATATCCTTATTTTGATATCACTAATACAATTCTATGGGAAGGCCAAGCGTACTGATGATGTTGTCGAGGCATTCAATCAACTACAACAATTGGGCATAACTTCAGATGAGCATTTCTGTGGTTATCTCCTGAATGTGATGACTCAAACACCAAAGGGTGAACTACCTGAGATGACTGATTGCATTGAGCGTGGTAATGAGAAGCTTGGATATGTTGTAAGACCTCTGGTAGAGAAGCAAGACAGTAGTCAAAACTTCAGGAAGGAAGCATCAGAACTTTTTAATTCAGTTGGTTCCGATATGAAGGCCTACTACAATTGCTTTATTAGTCTTCATGTGAACCTCCAGCTCTTGAAGAGAGCTTGTGAGTTTCTAAACCTGGGGCTTACACTTGAGATATACACAGATATACAATCAAAGTACCCAACCCAGTGGTCTCTGTATCTCAAGGGTCTCTCTGTTGGGGCAGTTTTTACTGCATTACATGTTTGGATTAATGACTTGTCTCGTTCTTTGGAATCCGGGGAGGAGCTGCCGATTCTGTCCAAGCCACAGCAGAAACTGGGTGATGCCAAAGTATTCATGATTGGGTCTGGTACACTCGAATGTGAGTTATTGAAACATGTTACCCTGATGGGAGCTTCATGTGGCAACCAGGGGAAGCAAACAGTCATTGATGATGATGTAATTGAGAAGAGTAACCCTAGTAAGCAGATCCTCTTCCGTGATTGGAACATTGGGTGGGCAAAGTCTACAGTTGCCGCTTCTACCGCTGCATTAATAAATCCCCGTCCCCGTCTCGACATTGTAGCGTTGCATAATAGAGTTCGACCTAAAACTGAGAAGTGTTATGGACGACTATCAGTTGTTGATGCAACTTTCGTGATAGGGCTTATAATTGACAATCTAAATATACGCAAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031425 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

337

Amino Acids

37.66

Weight (kDa)

6.95

Isoelectric Point (pI)

36.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ThiF	PF00899	211 - 334	2.7e-17	ThiF family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16390
fragaria_vesca	FvH4_3g00440 FvH4_3g00470
malus_domestica	MD00G1221000.v1.1 MD05G1360400.v1.1 MD08G1234300.v1.1 MD10G1337400.v1.1 MD10G1337800.v1.1 MD10G1338000.v1.1
prunus_persica	Prupe.3G138500_v2.0.a1 Prupe.4G005200_v2.0.a1
pyrus_communis	pycom05g32720 pycom10g28680 pycom10g28700 pycom10g28720 pycom10g28750
rosa_chinensis	RchiOBHm_Chr1g0364151 RchiOBHm_Chr2g0155431 RchiOBHm_Chr4g0402181 RchiOBHm_Chr5g0000631 RchiOBHm_Chr6g0271321
rosa_laevigata	RLG00000004254 RLG00000013858 RLG00000028931 RLG00000030883
rosa_multiflora	Rmu_co8004710.1_g000001 Rmu_co8021096.1_g000001 Rmu_co8161794.1_g000001 Rmu_sc0000795.1_g000110 Rmu_sc0001141.1_g000016 Rmu_sc0003662.1_g000007 Rmu_sc0003699.1_g000009 Rmu_sc0006695.1_g000081 Rmu_sc0010255.1_g000007 Rmu_sc0011992.1_g000014 Rmu_sc0016929.1_g000002 Rmu_sc0017523.1_g000008 Rmu_sc0021532.1_g000001 Rmu_sc0029877.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001310 Rroxscaffold_1G00075570 Rroxscaffold_4G00324290
rosa_rugosa	Rorug04G0385500 Rorug07G0309300.1
rosa_samantha	Rh5AG005400 Rh5BG007000 Rh5CG005700 Rh5DG005600
rosa_wichuraiana	Rw5G000530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	980
AccI	GTMKAC	1 cut(s)	836
AciI	CCGC	2 cut(s)	846, 855
AclI	AACGTT	1 cut(s)	50
AclWI	GGATC	1 cut(s)	793
AcuI	CTGAAG	2 cut(s)	171, 325
AfaI	GTAC	3 cut(s)	136, 506, 682
AfiI	CCNNNNNNNGG	1 cut(s)	24
AflIII	ACRYGT	2 cut(s)	568, 706
AgsI	TTSAA	4 cut(s)	55, 160, 439, 703
AjnI	CCWGG	2 cut(s)	462, 738
AluBI	AGCT	7 cut(s)	71, 82, 289, 433, 446, 616, 725
AluI	AGCT	7 cut(s)	71, 82, 289, 433, 446, 616, 725
Alw26I	GTCTC	5 cut(s)	37, 525, 542, 594, 887
AlwI	GGATC	1 cut(s)	793
AlwNI	CAGNNNCTG	1 cut(s)	646
AoxI	GGCC	2 cut(s)	126, 390
ApeKI	GCWGC	2 cut(s)	616, 857
AseI	ATTAAT	2 cut(s)	579, 863
AsuC2I	CCSGG	1 cut(s)	607
AsuHPI	GGTGA	2 cut(s)	254, 662
BarI	GAAGNNNNNNTAC	2 cut(s)	380, 412
BbsI	GAAGAC	1 cut(s)	407
BbvI	GCAGC	2 cut(s)	603, 844
BccI	CCATC	2 cut(s)	58, 712
BciT130I	CCWGG	2 cut(s)	464, 740
BcnI	CCSGG	1 cut(s)	607
BcoDI	GTCTC	5 cut(s)	37, 525, 542, 594, 887
BfaI	CTAG	1 cut(s)	789
BfmI	CTRYAG	2 cut(s)	19, 837
BisI	GCNGC	3 cut(s)	617, 846, 858
BlsI	GCNGC	3 cut(s)	618, 847, 859
Bme1390I	CCNGG	3 cut(s)	464, 607, 740
BmiI	GGNNCC	1 cut(s)	379
BmrFI	CCNGG	3 cut(s)	464, 607, 740
BmrI	ACTGGG	2 cut(s)	508, 656
BmsI	GCATC	3 cut(s)	362, 643, 946
BmuI	ACTGGG	2 cut(s)	508, 656
BoxI	GACNNNNGTC	1 cut(s)	330
BpiI	GAAGAC	1 cut(s)	407
BpmI	CTGGAG	1 cut(s)	413
BpuEI	CTTGAG	2 cut(s)	497, 515
BpuMI	CCSGG	1 cut(s)	607
BsaI	GGTCTC	2 cut(s)	525, 542
BsaJI	CCNNGG	3 cut(s)	463, 606, 739
Bsc4I	CCNNNNNNNGG	1 cut(s)	24
Bse1I	ACTGG	2 cut(s)	514, 651
BseBI	CCWGG	2 cut(s)	464, 740
BseDI	CCNNGG	3 cut(s)	463, 606, 739
BseLI	CCNNNNNNNGG	1 cut(s)	24
BseMII	CTCAG	3 cut(s)	48, 243, 915
BseNI	ACTGG	2 cut(s)	514, 651
BseRI	GAGGAG	1 cut(s)	626
BseXI	GCAGC	2 cut(s)	603, 844
BshFI	GGCC	2 cut(s)	128, 392
BsiSI	CCGG	1 cut(s)	606
BslFI	GGGAC	1 cut(s)	861
BslI	CCNNNNNNNGG	1 cut(s)	24
BsmAI	GTCTC	5 cut(s)	37, 525, 542, 594, 887
BsmBI	CGTCTC	1 cut(s)	887
BsmFI	GGGAC	1 cut(s)	861
BsmI	GAATGC	1 cut(s)	155
BsnI	GGCC	2 cut(s)	128, 392
Bso31I	GGTCTC	2 cut(s)	525, 542
Bsp143I	GATC	1 cut(s)	798
BspACI	CCGC	2 cut(s)	846, 855
BspANI	GGCC	2 cut(s)	128, 392
BspCNI	CTCAG	3 cut(s)	47, 244, 916
BspHI	TCATGA	1 cut(s)	666
BspLI	GGNNCC	1 cut(s)	379
BspPI	GGATC	1 cut(s)	793
BspTNI	GGTCTC	2 cut(s)	525, 542
BsrI	ACTGG	2 cut(s)	514, 651
BssECI	CCNNGG	3 cut(s)	463, 606, 739
BssMI	GATC	1 cut(s)	798
Bst2UI	CCWGG	2 cut(s)	464, 740
Bst4CI	ACNGT	3 cut(s)	329, 754, 841
Bst6I	CTCTTC	3 cut(s)	434, 773, 809
BstDEI	CTNAG	3 cut(s)	34, 252, 924
BstKTI	GATC	1 cut(s)	801
BstMAI	GTCTC	5 cut(s)	37, 525, 542, 594, 887
BstMBI	GATC	1 cut(s)	798
BstMWI	GCNNNNNNNGC	1 cut(s)	854
BstNI	CCWGG	2 cut(s)	464, 740
BstNSI	RCATGY	2 cut(s)	572, 710
BstPAI	GACNNNNGTC	1 cut(s)	330
BstSCI	CCNGG	3 cut(s)	462, 605, 738
BstSFI	CTRYAG	2 cut(s)	19, 837
BstV1I	GCAGC	2 cut(s)	603, 844
BstV2I	GAAGAC	1 cut(s)	407
BstX2I	RGATCY	1 cut(s)	798
BstXI	CCANNNNNNTGG	1 cut(s)	516
BstYI	RGATCY	1 cut(s)	798
BsuRI	GGCC	2 cut(s)	128, 392
BtsIMutI	CAGTG	1 cut(s)	521
CaiI	CAGNNNCTG	1 cut(s)	646
CciI	TCATGA	1 cut(s)	666
Csp6I	GTAC	3 cut(s)	135, 505, 681
CviAII	CATG	5 cut(s)	419, 569, 667, 707, 729
CviQI	GTAC	3 cut(s)	135, 505, 681
DdeI	CTNAG	3 cut(s)	34, 252, 924
DpnI	GATC	1 cut(s)	800
DpnII	GATC	1 cut(s)	798
Eam1104I	CTCTTC	3 cut(s)	434, 773, 809
EarI	CTCTTC	3 cut(s)	434, 773, 809
Eco147I	AGGCCT	1 cut(s)	392
Eco31I	GGTCTC	2 cut(s)	525, 542
Eco32I	GATATC	1 cut(s)	102
Eco57I	CTGAAG	2 cut(s)	171, 325
EcoRII	CCWGG	2 cut(s)	462, 738
EcoRV	GATATC	1 cut(s)	102
Esp3I	CGTCTC	1 cut(s)	887
FaeI	CATG	5 cut(s)	422, 572, 670, 710, 732
FaqI	GGGAC	1 cut(s)	861
FatI	CATG	5 cut(s)	418, 568, 666, 706, 728
FblI	GTMKAC	1 cut(s)	836
Fnu4HI	GCNGC	3 cut(s)	617, 846, 858
Fsp4HI	GCNGC	3 cut(s)	617, 846, 858
FspBI	CTAG	1 cut(s)	789
GluI	GCNGC	3 cut(s)	617, 846, 858
GsuI	CTGGAG	1 cut(s)	413
HaeIII	GGCC	2 cut(s)	128, 392
HapII	CCGG	1 cut(s)	606
Hin1II	CATG	5 cut(s)	422, 572, 670, 710, 732
HindIII	AAGCTT	1 cut(s)	287
HinfI	GANTC	3 cut(s)	226, 602, 622
HpaII	CCGG	1 cut(s)	606
HphI	GGTGA	2 cut(s)	254, 662
Hpy166II	GTNNAC	4 cut(s)	245, 424, 683, 837
Hpy188I	TCNGA	4 cut(s)	37, 190, 358, 382
Hpy188III	TCNNGA	7 cut(s)	214, 343, 436, 667, 884, 967, 1008
Hpy8I	GTNNAC	4 cut(s)	245, 424, 683, 837
HpyAV	CCTTC	3 cut(s)	118, 340, 382
HpyCH4III	ACNGT	3 cut(s)	329, 754, 841
HpyCH4IV	ACGT	1 cut(s)	50
HpyCH4V	TGCA	5 cut(s)	267, 563, 860, 901, 959
HpyF10VI	GCNNNNNNNGC	1 cut(s)	854
HpyF3I	CTNAG	3 cut(s)	34, 252, 924
HpySE526I	ACGT	1 cut(s)	50
Hsp92II	CATG	5 cut(s)	422, 572, 670, 710, 732
Kzo9I	GATC	1 cut(s)	798
LmnI	GCTCC	2 cut(s)	613, 722
Lsp1109I	GCAGC	2 cut(s)	603, 844
LweI	GCATC	3 cut(s)	362, 643, 946
MaeI	CTAG	1 cut(s)	789
MaeII	ACGT	1 cut(s)	50
MaeIII	GTNAC	2 cut(s)	709, 782
MalI	GATC	1 cut(s)	800
MboI	GATC	1 cut(s)	798
MboII	GAAGA	4 cut(s)	407, 451, 790, 796
MfeI	CAATTG	2 cut(s)	173, 400
MflI	RGATCY	1 cut(s)	798
MluCI	AATT	6 cut(s)	113, 173, 367, 400, 771, 981
MlyI	GAGTC	1 cut(s)	220
MnlI	CCTC	6 cut(s)	31, 145, 318, 437, 604, 812
MseI	TTAA	4 cut(s)	84, 366, 579, 863
MslI	CAYNNNNRTG	2 cut(s)	201, 688
MspA1I	CMGCKG	1 cut(s)	857
MspI	CCGG	1 cut(s)	606
MspR9I	CCNGG	3 cut(s)	464, 607, 740
MunI	CAATTG	2 cut(s)	173, 400
Mva1269I	GAATGC	1 cut(s)	155
MvaI	CCWGG	2 cut(s)	464, 740
MwoI	GCNNNNNNNGC	1 cut(s)	854
NciI	CCSGG	1 cut(s)	607
NdeII	GATC	1 cut(s)	798
NlaIII	CATG	5 cut(s)	422, 572, 670, 710, 732
NlaIV	GGNNCC	1 cut(s)	379
NspI	RCATGY	2 cut(s)	572, 710
PagI	TCATGA	1 cut(s)	666
PceI	AGGCCT	1 cut(s)	392
PciI	ACATGT	2 cut(s)	568, 706
PctI	GAATGC	1 cut(s)	155
PfeI	GAWTC	2 cut(s)	602, 622
PkrI	GCNGC	3 cut(s)	618, 847, 859
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
PscI	ACATGT	2 cut(s)	568, 706
PshAI	GACNNNNGTC	1 cut(s)	330
PshBI	ATTAAT	2 cut(s)	579, 863
PsiI	TTATAA	1 cut(s)	980
Psp1406I	AACGTT	1 cut(s)	50
Psp6I	CCWGG	2 cut(s)	462, 738
PspGI	CCWGG	2 cut(s)	462, 738
PspN4I	GGNNCC	1 cut(s)	379
PstNI	CAGNNNCTG	1 cut(s)	646
PsuI	RGATCY	1 cut(s)	798
RsaI	GTAC	3 cut(s)	136, 506, 682
RsaNI	GTAC	3 cut(s)	135, 505, 681
RseI	CAYNNNNRTG	2 cut(s)	201, 688
SaqAI	TTAA	4 cut(s)	84, 366, 579, 863
SatI	GCNGC	3 cut(s)	617, 846, 858
Sau3AI	GATC	1 cut(s)	798
SchI	GAGTC	1 cut(s)	220
ScrFI	CCNGG	3 cut(s)	464, 607, 740
SfaNI	GCATC	3 cut(s)	362, 643, 946
SfcI	CTRYAG	2 cut(s)	19, 837
SmiMI	CAYNNNNRTG	2 cut(s)	201, 688
SmlI	CTYRAG	2 cut(s)	476, 530
SmoI	CTYRAG	2 cut(s)	476, 530
Sse9I	AATT	6 cut(s)	113, 173, 367, 400, 771, 981
SseBI	AGGCCT	1 cut(s)	392
SsiI	CCGC	2 cut(s)	846, 855
SspMI	CTAG	1 cut(s)	789
StuI	AGGCCT	1 cut(s)	392
StyD4I	CCNGG	3 cut(s)	462, 605, 738
TaaI	ACNGT	3 cut(s)	329, 754, 841
TaiI	ACGT	1 cut(s)	53
TaqI	TCGA	4 cut(s)	150, 687, 885, 913
TasI	AATT	6 cut(s)	113, 173, 367, 400, 771, 981
TauI	GCSGC	1 cut(s)	848
TfiI	GAWTC	2 cut(s)	602, 622
Tru1I	TTAA	4 cut(s)	84, 366, 579, 863
Tru9I	TTAA	4 cut(s)	84, 366, 579, 863
TscAI	CASTG	1 cut(s)	521
TseI	GCWGC	2 cut(s)	616, 857
TspDTI	ATGAA	4 cut(s)	401, 407, 655, 717
TspGWI	ACGGA	1 cut(s)	797
TspRI	CASTG	1 cut(s)	521
VspI	ATTAAT	2 cut(s)	579, 863
XceI	RCATGY	2 cut(s)	572, 710
XmiI	GTMKAC	1 cut(s)	836
XspI	CTAG	1 cut(s)	789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.