Pentatricopeptide repeat-containing protein At4g16390
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 169 - 214 | 3.1e-09 | PPR repeat family |
| PPR_2 | PF13041 | 221 - 250 | 1.5e-06 | PPR repeat family |
| TPR_24 | PF23276 | 224 - 336 | 6.9e-07 | Fungal tetratrico peptide repeats |
| PPR_1 | PF12854 | 235 - 265 | 2.3e-10 | PPR repeat |
| PPR_2 | PF13041 | 241 - 283 | 4e-07 | PPR repeat family |
| PPR | PF01535 | 241 - 265 | 2.9e-07 | PPR repeat |
| PPR_long | PF17177 | 252 - 358 | 1.9e-07 | Pentacotripeptide-repeat region of PRORP |
| PPR_3 | PF13812 | 272 - 321 | 5.8e-08 | Pentatricopeptide repeat domain |
| PPR_3 | PF13812 | 297 - 356 | 3.9e-10 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 308 - 356 | 5.3e-12 | PPR repeat family |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 939 |
| AatII | GACGTC | 1 cut(s) | 1148 |
| AccII | CGCG | 1 cut(s) | 795 |
| AciI | CCGC | 2 cut(s) | 37, 793 |
| AclI | AACGTT | 1 cut(s) | 839 |
| AclWI | GGATC | 1 cut(s) | 815 |
| AcsI | RAATTY | 2 cut(s) | 141, 993 |
| AcyI | GRCGYC | 1 cut(s) | 1145 |
| AfaI | GTAC | 2 cut(s) | 91, 476 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 701, 1032, 1033, 1108 |
| AgsI | TTSAA | 5 cut(s) | 112, 197, 343, 532, 886 |
| AjiI | CACGTC | 1 cut(s) | 1200 |
| AjnI | CCWGG | 1 cut(s) | 305 |
| Alw21I | GWGCWC | 1 cut(s) | 1075 |
| AlwI | GGATC | 1 cut(s) | 815 |
| AoxI | GGCC | 5 cut(s) | 83, 974, 984, 1059, 1098 |
| ApeKI | GCWGC | 2 cut(s) | 264, 329 |
| ApoI | RAATTY | 2 cut(s) | 141, 993 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 510 |
| AspLEI | GCGC | 2 cut(s) | 797, 816 |
| AspS9I | GGNCC | 2 cut(s) | 1059, 1099 |
| AsuHPI | GGTGA | 6 cut(s) | 109, 377, 407, 928, 1048, 1161 |
| BanII | GRGCYC | 2 cut(s) | 188, 1075 |
| BbsI | GAAGAC | 2 cut(s) | 222, 1014 |
| Bbv12I | GWGCWC | 1 cut(s) | 1075 |
| BbvI | GCAGC | 2 cut(s) | 276, 341 |
| BccI | CCATC | 2 cut(s) | 209, 869 |
| BciT130I | CCWGG | 1 cut(s) | 307 |
| BclI | TGATCA | 2 cut(s) | 1008, 1227 |
| BfaI | CTAG | 4 cut(s) | 320, 645, 798, 1161 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 216 |
| BisI | GCNGC | 2 cut(s) | 265, 330 |
| BlsI | GCNGC | 2 cut(s) | 266, 331 |
| BmcAI | AGTACT | 1 cut(s) | 476 |
| Bme1390I | CCNGG | 1 cut(s) | 307 |
| BmgBI | CACGTC | 1 cut(s) | 1200 |
| BmgT120I | GGNCC | 2 cut(s) | 1059, 1099 |
| BmiI | GGNNCC | 1 cut(s) | 1101 |
| BmrFI | CCNGG | 1 cut(s) | 307 |
| BmsI | GCATC | 4 cut(s) | 406, 681, 943, 1055 |
| BpiI | GAAGAC | 2 cut(s) | 222, 1014 |
| BpmI | CTGGAG | 1 cut(s) | 121 |
| Bpu10I | CCTNAGC | 2 cut(s) | 80, 284 |
| BpuEI | CTTGAG | 1 cut(s) | 455 |
| BsaHI | GRCGYC | 1 cut(s) | 1145 |
| BsaJI | CCNNGG | 2 cut(s) | 977, 1131 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 701, 1032, 1033, 1108 |
| Bse118I | RCCGGY | 1 cut(s) | 758 |
| Bse1I | ACTGG | 2 cut(s) | 355, 824 |
| BseBI | CCWGG | 1 cut(s) | 307 |
| BseDI | CCNNGG | 2 cut(s) | 977, 1131 |
| BseGI | GGATG | 2 cut(s) | 654, 958 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 701, 1032, 1033, 1108 |
| BseMII | CTCAG | 3 cut(s) | 94, 298, 324 |
| BseNI | ACTGG | 2 cut(s) | 355, 824 |
| BseRI | GAGGAG | 1 cut(s) | 58 |
| BseXI | GCAGC | 2 cut(s) | 276, 341 |
| BseYI | CCCAGC | 1 cut(s) | 260 |
| Bsh1236I | CGCG | 1 cut(s) | 795 |
| BshFI | GGCC | 5 cut(s) | 85, 976, 986, 1061, 1100 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1075 |
| BsiSI | CCGG | 1 cut(s) | 759 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 701, 1032, 1033, 1108 |
| BsnI | GGCC | 5 cut(s) | 85, 976, 986, 1061, 1100 |
| Bsp1286I | GDGCHC | 2 cut(s) | 188, 1075 |
| Bsp143I | GATC | 3 cut(s) | 820, 1008, 1227 |
| BspACI | CCGC | 2 cut(s) | 37, 793 |
| BspANI | GGCC | 5 cut(s) | 85, 976, 986, 1061, 1100 |
| BspCNI | CTCAG | 3 cut(s) | 93, 297, 325 |
| BspFNI | CGCG | 1 cut(s) | 795 |
| BspLI | GGNNCC | 1 cut(s) | 1101 |
| BspPI | GGATC | 1 cut(s) | 815 |
| BspQI | GCTCTTC | 2 cut(s) | 32, 958 |
| BsrFI | RCCGGY | 1 cut(s) | 758 |
| BsrI | ACTGG | 2 cut(s) | 355, 824 |
| BssAI | RCCGGY | 1 cut(s) | 758 |
| BssECI | CCNNGG | 2 cut(s) | 977, 1131 |
| BssMI | GATC | 3 cut(s) | 820, 1008, 1227 |
| BssNI | GRCGYC | 1 cut(s) | 1145 |
| BssT1I | CCWWGG | 2 cut(s) | 977, 1131 |
| Bst2UI | CCWGG | 1 cut(s) | 307 |
| Bst6I | CTCTTC | 4 cut(s) | 25, 32, 67, 958 |
| BstACI | GRCGYC | 1 cut(s) | 1145 |
| BstC8I | GCNNGC | 4 cut(s) | 756, 984, 1075, 1195 |
| BstDEI | CTNAG | 5 cut(s) | 80, 284, 333, 356, 969 |
| BstEII | GGTNACC | 2 cut(s) | 1036, 1167 |
| BstF5I | GGATG | 2 cut(s) | 654, 958 |
| BstFNI | CGCG | 1 cut(s) | 795 |
| BstHHI | GCGC | 2 cut(s) | 797, 816 |
| BstKTI | GATC | 3 cut(s) | 823, 1011, 1230 |
| BstMBI | GATC | 3 cut(s) | 820, 1008, 1227 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 216 |
| BstNI | CCWGG | 1 cut(s) | 307 |
| BstPI | GGTNACC | 2 cut(s) | 1036, 1167 |
| BstSCI | CCNGG | 1 cut(s) | 305 |
| BstUI | CGCG | 1 cut(s) | 795 |
| BstV1I | GCAGC | 2 cut(s) | 276, 341 |
| BstV2I | GAAGAC | 2 cut(s) | 222, 1014 |
| BsuRI | GGCC | 5 cut(s) | 85, 976, 986, 1061, 1100 |
| BtrI | CACGTC | 1 cut(s) | 1200 |
| BtsCI | GGATG | 2 cut(s) | 654, 958 |
| BtsI | GCAGTG | 1 cut(s) | 1146 |
| BtsIMutI | CAGTG | 2 cut(s) | 831, 1146 |
| Cac8I | GCNNGC | 4 cut(s) | 756, 984, 1075, 1195 |
| CfoI | GCGC | 2 cut(s) | 797, 816 |
| Cfr10I | RCCGGY | 1 cut(s) | 758 |
| Cfr13I | GGNCC | 2 cut(s) | 1059, 1099 |
| CseI | GACGC | 2 cut(s) | 752, 1091 |
| Csp6I | GTAC | 2 cut(s) | 90, 475 |
| CviAII | CATG | 6 cut(s) | 161, 928, 1094, 1149, 1189, 1216 |
| CviQI | GTAC | 2 cut(s) | 90, 475 |
| DdeI | CTNAG | 5 cut(s) | 80, 284, 333, 356, 969 |
| DpnI | GATC | 3 cut(s) | 822, 1010, 1229 |
| DpnII | GATC | 3 cut(s) | 820, 1008, 1227 |
| DraI | TTTAAA | 2 cut(s) | 384, 493 |
| Eam1104I | CTCTTC | 4 cut(s) | 25, 32, 67, 958 |
| EarI | CTCTTC | 4 cut(s) | 25, 32, 67, 958 |
| Ecl136II | GAGCTC | 1 cut(s) | 1073 |
| Eco130I | CCWWGG | 2 cut(s) | 977, 1131 |
| Eco147I | AGGCCT | 1 cut(s) | 976 |
| Eco24I | GRGCYC | 2 cut(s) | 188, 1075 |
| Eco53kI | GAGCTC | 1 cut(s) | 1073 |
| Eco91I | GGTNACC | 2 cut(s) | 1036, 1167 |
| EcoICRI | GAGCTC | 1 cut(s) | 1073 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1099 |
| EcoO65I | GGTNACC | 2 cut(s) | 1036, 1167 |
| EcoRII | CCWGG | 1 cut(s) | 305 |
| EcoT14I | CCWWGG | 2 cut(s) | 977, 1131 |
| EcoT22I | ATGCAT | 1 cut(s) | 1048 |
| EcoT38I | GRGCYC | 2 cut(s) | 188, 1075 |
| ErhI | CCWWGG | 2 cut(s) | 977, 1131 |
| FaeI | CATG | 6 cut(s) | 164, 931, 1097, 1152, 1192, 1219 |
| FatI | CATG | 6 cut(s) | 160, 927, 1093, 1148, 1188, 1215 |
| FauNDI | CATATG | 1 cut(s) | 748 |
| FbaI | TGATCA | 2 cut(s) | 1008, 1227 |
| Fnu4HI | GCNGC | 2 cut(s) | 265, 330 |
| FokI | GGATG | 2 cut(s) | 661, 965 |
| FriOI | GRGCYC | 2 cut(s) | 188, 1075 |
| Fsp4HI | GCNGC | 2 cut(s) | 265, 330 |
| FspBI | CTAG | 4 cut(s) | 320, 645, 798, 1161 |
| GlaI | GCGC | 2 cut(s) | 796, 815 |
| GluI | GCNGC | 2 cut(s) | 265, 330 |
| GsaI | CCCAGC | 1 cut(s) | 264 |
| GsuI | CTGGAG | 1 cut(s) | 121 |
| HaeIII | GGCC | 5 cut(s) | 85, 976, 986, 1061, 1100 |
| HapII | CCGG | 1 cut(s) | 759 |
| HgaI | GACGC | 2 cut(s) | 752, 1091 |
| HhaI | GCGC | 2 cut(s) | 797, 816 |
| Hin1I | GRCGYC | 1 cut(s) | 1145 |
| Hin1II | CATG | 6 cut(s) | 164, 931, 1097, 1152, 1192, 1219 |
| Hin6I | GCGC | 2 cut(s) | 795, 814 |
| HinP1I | GCGC | 2 cut(s) | 795, 814 |
| HincII | GTYRAC | 1 cut(s) | 769 |
| HindII | GTYRAC | 1 cut(s) | 769 |
| HinfI | GANTC | 5 cut(s) | 227, 302, 335, 850, 1157 |
| HpaII | CCGG | 1 cut(s) | 759 |
| HphI | GGTGA | 6 cut(s) | 109, 377, 407, 928, 1048, 1161 |
| Hpy166II | GTNNAC | 3 cut(s) | 769, 892, 1186 |
| Hpy188I | TCNGA | 2 cut(s) | 97, 226 |
| Hpy188III | TCNNGA | 5 cut(s) | 138, 286, 449, 713, 1161 |
| Hpy8I | GTNNAC | 3 cut(s) | 769, 892, 1186 |
| HpyAV | CCTTC | 6 cut(s) | 118, 130, 356, 898, 1158, 1220 |
| HpyCH4IV | ACGT | 3 cut(s) | 839, 1145, 1199 |
| HpyCH4V | TGCA | 4 cut(s) | 836, 1046, 1139, 1197 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 216 |
| HpyF3I | CTNAG | 5 cut(s) | 80, 284, 333, 356, 969 |
| HpySE526I | ACGT | 3 cut(s) | 839, 1145, 1199 |
| Hsp92I | GRCGYC | 1 cut(s) | 1145 |
| Hsp92II | CATG | 6 cut(s) | 164, 931, 1097, 1152, 1192, 1219 |
| HspAI | GCGC | 2 cut(s) | 795, 814 |
| Ksp22I | TGATCA | 2 cut(s) | 1008, 1227 |
| Kzo9I | GATC | 3 cut(s) | 820, 1008, 1227 |
| LguI | GCTCTTC | 2 cut(s) | 32, 958 |
| LmnI | GCTCC | 2 cut(s) | 14, 1090 |
| Lsp1109I | GCAGC | 2 cut(s) | 276, 341 |
| LweI | GCATC | 4 cut(s) | 406, 681, 943, 1055 |
| MaeI | CTAG | 4 cut(s) | 320, 645, 798, 1161 |
| MaeII | ACGT | 3 cut(s) | 839, 1145, 1199 |
| MaeIII | GTNAC | 8 cut(s) | 395, 523, 616, 721, 826, 1036, 1141, 1167 |
| MalI | GATC | 3 cut(s) | 822, 1010, 1229 |
| MboI | GATC | 3 cut(s) | 820, 1008, 1227 |
| MboII | GAAGA | 8 cut(s) | 12, 19, 54, 222, 301, 700, 975, 1014 |
| MhlI | GDGCHC | 2 cut(s) | 188, 1075 |
| MluCI | AATT | 5 cut(s) | 141, 220, 868, 993, 1030 |
| MlyI | GAGTC | 3 cut(s) | 236, 344, 1166 |
| MmeI | TCCRAC | 2 cut(s) | 930, 1134 |
| Mph1103I | ATGCAT | 1 cut(s) | 1048 |
| MroXI | GAANNNNTTC | 1 cut(s) | 510 |
| MseI | TTAA | 5 cut(s) | 383, 444, 492, 603, 846 |
| MspA1I | CMGCKG | 1 cut(s) | 332 |
| MspI | CCGG | 1 cut(s) | 759 |
| MspR9I | CCNGG | 1 cut(s) | 307 |
| MssI | GTTTAAAC | 1 cut(s) | 493 |
| MvaI | CCWGG | 1 cut(s) | 307 |
| MvnI | CGCG | 1 cut(s) | 795 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 216 |
| NdeI | CATATG | 1 cut(s) | 748 |
| NdeII | GATC | 3 cut(s) | 820, 1008, 1227 |
| NlaIII | CATG | 6 cut(s) | 164, 931, 1097, 1152, 1192, 1219 |
| NlaIV | GGNNCC | 1 cut(s) | 1101 |
| NmuCI | GTSAC | 6 cut(s) | 395, 523, 826, 1036, 1141, 1167 |
| NsiI | ATGCAT | 1 cut(s) | 1048 |
| PceI | AGGCCT | 1 cut(s) | 976 |
| PciSI | GCTCTTC | 2 cut(s) | 32, 958 |
| PdmI | GAANNNNTTC | 1 cut(s) | 510 |
| PfeI | GAWTC | 2 cut(s) | 302, 850 |
| PkrI | GCNGC | 2 cut(s) | 266, 331 |
| PleI | GAGTC | 3 cut(s) | 235, 343, 1165 |
| PmeI | GTTTAAAC | 1 cut(s) | 493 |
| PpsI | GAGTC | 3 cut(s) | 235, 343, 1165 |
| PsiI | TTATAA | 1 cut(s) | 939 |
| Psp124BI | GAGCTC | 1 cut(s) | 1075 |
| Psp1406I | AACGTT | 1 cut(s) | 839 |
| Psp6I | CCWGG | 1 cut(s) | 305 |
| PspEI | GGTNACC | 2 cut(s) | 1036, 1167 |
| PspFI | CCCAGC | 1 cut(s) | 260 |
| PspGI | CCWGG | 1 cut(s) | 305 |
| PspN4I | GGNNCC | 1 cut(s) | 1101 |
| PspPI | GGNCC | 2 cut(s) | 1059, 1099 |
| PvuII | CAGCTG | 1 cut(s) | 332 |
| RsaI | GTAC | 2 cut(s) | 91, 476 |
| RsaNI | GTAC | 2 cut(s) | 90, 475 |
| SacI | GAGCTC | 1 cut(s) | 1075 |
| SapI | GCTCTTC | 2 cut(s) | 32, 958 |
| SaqAI | TTAA | 5 cut(s) | 383, 444, 492, 603, 846 |
| SatI | GCNGC | 2 cut(s) | 265, 330 |
| Sau3AI | GATC | 3 cut(s) | 820, 1008, 1227 |
| Sau96I | GGNCC | 2 cut(s) | 1059, 1099 |
| ScaI | AGTACT | 1 cut(s) | 476 |
| SchI | GAGTC | 3 cut(s) | 236, 344, 1166 |
| ScrFI | CCNGG | 1 cut(s) | 307 |
| SduI | GDGCHC | 2 cut(s) | 188, 1075 |
| SfaNI | GCATC | 4 cut(s) | 406, 681, 943, 1055 |
| SmlI | CTYRAG | 1 cut(s) | 470 |
| SmoI | CTYRAG | 1 cut(s) | 470 |
| Sse9I | AATT | 5 cut(s) | 141, 220, 868, 993, 1030 |
| SseBI | AGGCCT | 1 cut(s) | 976 |
| SsiI | CCGC | 2 cut(s) | 37, 793 |
| SspMI | CTAG | 4 cut(s) | 320, 645, 798, 1161 |
| SstI | GAGCTC | 1 cut(s) | 1075 |
| StuI | AGGCCT | 1 cut(s) | 976 |
| StyD4I | CCNGG | 1 cut(s) | 305 |
| StyI | CCWWGG | 2 cut(s) | 977, 1131 |
| TaiI | ACGT | 3 cut(s) | 842, 1148, 1202 |
| TaqI | TCGA | 1 cut(s) | 626 |
| TasI | AATT | 5 cut(s) | 141, 220, 868, 993, 1030 |
| TatI | WGTACW | 1 cut(s) | 474 |
| TfiI | GAWTC | 2 cut(s) | 302, 850 |
| Tru1I | TTAA | 5 cut(s) | 383, 444, 492, 603, 846 |
| Tru9I | TTAA | 5 cut(s) | 383, 444, 492, 603, 846 |
| TscAI | CASTG | 2 cut(s) | 831, 1146 |
| TseFI | GTSAC | 6 cut(s) | 395, 523, 826, 1036, 1141, 1167 |
| TseI | GCWGC | 2 cut(s) | 264, 329 |
| Tsp45I | GTSAC | 6 cut(s) | 395, 523, 826, 1036, 1141, 1167 |
| TspDTI | ATGAA | 1 cut(s) | 917 |
| TspGWI | ACGGA | 1 cut(s) | 1077 |
| TspRI | CASTG | 2 cut(s) | 831, 1146 |
| XapI | RAATTY | 2 cut(s) | 141, 993 |
| XbaI | TCTAGA | 1 cut(s) | 1160 |
| XmnI | GAANNNNTTC | 1 cut(s) | 510 |
| XspI | CTAG | 4 cut(s) | 320, 645, 798, 1161 |
| ZraI | GACGTC | 1 cut(s) | 1146 |
| ZrmI | AGTACT | 1 cut(s) | 476 |
| Zsp2I | ATGCAT | 1 cut(s) | 1048 |