Rh5CG005700

Pentatricopeptide repeat-containing protein At4g16390

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Forward (+)
383337 .. 386176
2840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG005700.1

Sequence Viewer

Length: 1251 bp
ATGATAAGCTCCACACCCTCTTCGCTCTTCCATAACCGCCACACCCTCTCTCACTCCCTCTCTTCCTCCTCTACAAAGCTCAGGCCAAGTACCTCTGATATTCACACCTTCAATCTCACCTTCCCTACACTTCACTCCAGAATTTCTCTCCAAATAAACCATGTTTCTTTACAAGAAACCCAGAGCCCAAAACTTGAAAACCCTCCAAGCCCAGATGGCAATTCCGAGTCTTCGTCCAAAAGCTATATCTGGGTCAATCCCAGCAGCCCCAGAGCTTCACAGCTCAGGAAGAAATCCTATGATTCCAGGTATGCTTCTCTAGTCAAAGCAGCTGAGTCCTTGAACTCTACTGGTCTAAGTGAAGGTGATGTTATCGGTATTTTAAAGGGTTTAGGTGACAGGGTTTTGGAACAAGATGCTGTGGTTGTTCTCAATAATATGGTTAATCCCGAAAATGCGTTGCTTGTTCTCAAGTACTTTCAGCAGAGGTTTAAACCAAAGAGGGAAGTGGTTCTCTATAATGTGACCTTGAAAGTTTTTAGGAAGTGTAAGGATTTGGAGAGAGCAGAGAAGCTGTTTTATGAGATACTTGGGAGAGGTGTTAAACCTGATAATGTTACATTTTCGACTATGATTAGCTGTGCTAGGATGTGTTATCTGCCTGATAAGGCTGTGGAGTGGTTTGAGAAGATGCCTACTTTTGGGTGTAATCCCGATGATGTTACCTATTCAGCTATGATTGACGCATATGGGCGTGCCGGTAATGTTGACAAGGCTTTTAGCTTGTATGACCGCGCTAGGACAGAGAAGTGGCGCATTGATCCAGTGACATTTGCAACGTTGATTAAGATTCACGGGCAATCGGGGAATTATGATGGGTGCTTGAATGTTTACGAGGAAATGAAGGCTATTGGGGTGAAGCCGAACATGGTTATTTATAATACTTTGTTGGATGCTATGGGAAGAGCTAAGAGGCCTTGGCAGGCCAAGAAAATTTACCGAGAGATGATCAGCAAGGGGTCTTCCCCAAATTGGGTGACCTATGCATCTCTGCTACGGGCCTTTGGTAGAGCTCGCTATGACGCTCCGTTCCATGAGGCCCCAGACAAGGTTGGCTGGTTTTTGACTACCAAGGTTGCAGTGACGTCATGGTTGGAGTCTAGAAGGTCACCACAAGAGCTTGTAAACATGGCTTGCACGTCAAACTGCCTTCCCATGTGGAATGTGATCAAAGCCAGAGCCACACTATAA

Protein Analysis

416

Amino Acids

46.95

Weight (kDa)

9.44

Isoelectric Point (pI)

45.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 169 - 214 3.1e-09 PPR repeat family
PPR_2 PF13041 221 - 250 1.5e-06 PPR repeat family
TPR_24 PF23276 224 - 336 6.9e-07 Fungal tetratrico peptide repeats
PPR_1 PF12854 235 - 265 2.3e-10 PPR repeat
PPR_2 PF13041 241 - 283 4e-07 PPR repeat family
PPR PF01535 241 - 265 2.9e-07 PPR repeat
PPR_long PF17177 252 - 358 1.9e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 272 - 321 5.8e-08 Pentatricopeptide repeat domain
PPR_3 PF13812 297 - 356 3.9e-10 Pentatricopeptide repeat domain
PPR_2 PF13041 308 - 356 5.3e-12 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 939
AatII GACGTC 1 cut(s) 1148
AccII CGCG 1 cut(s) 795
AciI CCGC 2 cut(s) 37, 793
AclI AACGTT 1 cut(s) 839
AclWI GGATC 1 cut(s) 815
AcsI RAATTY 2 cut(s) 141, 993
AcyI GRCGYC 1 cut(s) 1145
AfaI GTAC 2 cut(s) 91, 476
AfiI CCNNNNNNNGG 4 cut(s) 701, 1032, 1033, 1108
AgsI TTSAA 5 cut(s) 112, 197, 343, 532, 886
AjiI CACGTC 1 cut(s) 1200
AjnI CCWGG 1 cut(s) 305
Alw21I GWGCWC 1 cut(s) 1075
AlwI GGATC 1 cut(s) 815
AoxI GGCC 5 cut(s) 83, 974, 984, 1059, 1098
ApeKI GCWGC 2 cut(s) 264, 329
ApoI RAATTY 2 cut(s) 141, 993
Asp700I GAANNNNTTC 1 cut(s) 510
AspLEI GCGC 2 cut(s) 797, 816
AspS9I GGNCC 2 cut(s) 1059, 1099
AsuHPI GGTGA 6 cut(s) 109, 377, 407, 928, 1048, 1161
BanII GRGCYC 2 cut(s) 188, 1075
BbsI GAAGAC 2 cut(s) 222, 1014
Bbv12I GWGCWC 1 cut(s) 1075
BbvI GCAGC 2 cut(s) 276, 341
BccI CCATC 2 cut(s) 209, 869
BciT130I CCWGG 1 cut(s) 307
BclI TGATCA 2 cut(s) 1008, 1227
BfaI CTAG 4 cut(s) 320, 645, 798, 1161
BglI GCCNNNNNGGC 1 cut(s) 216
BisI GCNGC 2 cut(s) 265, 330
BlsI GCNGC 2 cut(s) 266, 331
BmcAI AGTACT 1 cut(s) 476
Bme1390I CCNGG 1 cut(s) 307
BmgBI CACGTC 1 cut(s) 1200
BmgT120I GGNCC 2 cut(s) 1059, 1099
BmiI GGNNCC 1 cut(s) 1101
BmrFI CCNGG 1 cut(s) 307
BmsI GCATC 4 cut(s) 406, 681, 943, 1055
BpiI GAAGAC 2 cut(s) 222, 1014
BpmI CTGGAG 1 cut(s) 121
Bpu10I CCTNAGC 2 cut(s) 80, 284
BpuEI CTTGAG 1 cut(s) 455
BsaHI GRCGYC 1 cut(s) 1145
BsaJI CCNNGG 2 cut(s) 977, 1131
Bsc4I CCNNNNNNNGG 4 cut(s) 701, 1032, 1033, 1108
Bse118I RCCGGY 1 cut(s) 758
Bse1I ACTGG 2 cut(s) 355, 824
BseBI CCWGG 1 cut(s) 307
BseDI CCNNGG 2 cut(s) 977, 1131
BseGI GGATG 2 cut(s) 654, 958
BseLI CCNNNNNNNGG 4 cut(s) 701, 1032, 1033, 1108
BseMII CTCAG 3 cut(s) 94, 298, 324
BseNI ACTGG 2 cut(s) 355, 824
BseRI GAGGAG 1 cut(s) 58
BseXI GCAGC 2 cut(s) 276, 341
BseYI CCCAGC 1 cut(s) 260
Bsh1236I CGCG 1 cut(s) 795
BshFI GGCC 5 cut(s) 85, 976, 986, 1061, 1100
BsiHKAI GWGCWC 1 cut(s) 1075
BsiSI CCGG 1 cut(s) 759
BslI CCNNNNNNNGG 4 cut(s) 701, 1032, 1033, 1108
BsnI GGCC 5 cut(s) 85, 976, 986, 1061, 1100
Bsp1286I GDGCHC 2 cut(s) 188, 1075
Bsp143I GATC 3 cut(s) 820, 1008, 1227
BspACI CCGC 2 cut(s) 37, 793
BspANI GGCC 5 cut(s) 85, 976, 986, 1061, 1100
BspCNI CTCAG 3 cut(s) 93, 297, 325
BspFNI CGCG 1 cut(s) 795
BspLI GGNNCC 1 cut(s) 1101
BspPI GGATC 1 cut(s) 815
BspQI GCTCTTC 2 cut(s) 32, 958
BsrFI RCCGGY 1 cut(s) 758
BsrI ACTGG 2 cut(s) 355, 824
BssAI RCCGGY 1 cut(s) 758
BssECI CCNNGG 2 cut(s) 977, 1131
BssMI GATC 3 cut(s) 820, 1008, 1227
BssNI GRCGYC 1 cut(s) 1145
BssT1I CCWWGG 2 cut(s) 977, 1131
Bst2UI CCWGG 1 cut(s) 307
Bst6I CTCTTC 4 cut(s) 25, 32, 67, 958
BstACI GRCGYC 1 cut(s) 1145
BstC8I GCNNGC 4 cut(s) 756, 984, 1075, 1195
BstDEI CTNAG 5 cut(s) 80, 284, 333, 356, 969
BstEII GGTNACC 2 cut(s) 1036, 1167
BstF5I GGATG 2 cut(s) 654, 958
BstFNI CGCG 1 cut(s) 795
BstHHI GCGC 2 cut(s) 797, 816
BstKTI GATC 3 cut(s) 823, 1011, 1230
BstMBI GATC 3 cut(s) 820, 1008, 1227
BstMWI GCNNNNNNNGC 1 cut(s) 216
BstNI CCWGG 1 cut(s) 307
BstPI GGTNACC 2 cut(s) 1036, 1167
BstSCI CCNGG 1 cut(s) 305
BstUI CGCG 1 cut(s) 795
BstV1I GCAGC 2 cut(s) 276, 341
BstV2I GAAGAC 2 cut(s) 222, 1014
BsuRI GGCC 5 cut(s) 85, 976, 986, 1061, 1100
BtrI CACGTC 1 cut(s) 1200
BtsCI GGATG 2 cut(s) 654, 958
BtsI GCAGTG 1 cut(s) 1146
BtsIMutI CAGTG 2 cut(s) 831, 1146
Cac8I GCNNGC 4 cut(s) 756, 984, 1075, 1195
CfoI GCGC 2 cut(s) 797, 816
Cfr10I RCCGGY 1 cut(s) 758
Cfr13I GGNCC 2 cut(s) 1059, 1099
CseI GACGC 2 cut(s) 752, 1091
Csp6I GTAC 2 cut(s) 90, 475
CviAII CATG 6 cut(s) 161, 928, 1094, 1149, 1189, 1216
CviQI GTAC 2 cut(s) 90, 475
DdeI CTNAG 5 cut(s) 80, 284, 333, 356, 969
DpnI GATC 3 cut(s) 822, 1010, 1229
DpnII GATC 3 cut(s) 820, 1008, 1227
DraI TTTAAA 2 cut(s) 384, 493
Eam1104I CTCTTC 4 cut(s) 25, 32, 67, 958
EarI CTCTTC 4 cut(s) 25, 32, 67, 958
Ecl136II GAGCTC 1 cut(s) 1073
Eco130I CCWWGG 2 cut(s) 977, 1131
Eco147I AGGCCT 1 cut(s) 976
Eco24I GRGCYC 2 cut(s) 188, 1075
Eco53kI GAGCTC 1 cut(s) 1073
Eco91I GGTNACC 2 cut(s) 1036, 1167
EcoICRI GAGCTC 1 cut(s) 1073
EcoO109I RGGNCCY 1 cut(s) 1099
EcoO65I GGTNACC 2 cut(s) 1036, 1167
EcoRII CCWGG 1 cut(s) 305
EcoT14I CCWWGG 2 cut(s) 977, 1131
EcoT22I ATGCAT 1 cut(s) 1048
EcoT38I GRGCYC 2 cut(s) 188, 1075
ErhI CCWWGG 2 cut(s) 977, 1131
FaeI CATG 6 cut(s) 164, 931, 1097, 1152, 1192, 1219
FatI CATG 6 cut(s) 160, 927, 1093, 1148, 1188, 1215
FauNDI CATATG 1 cut(s) 748
FbaI TGATCA 2 cut(s) 1008, 1227
Fnu4HI GCNGC 2 cut(s) 265, 330
FokI GGATG 2 cut(s) 661, 965
FriOI GRGCYC 2 cut(s) 188, 1075
Fsp4HI GCNGC 2 cut(s) 265, 330
FspBI CTAG 4 cut(s) 320, 645, 798, 1161
GlaI GCGC 2 cut(s) 796, 815
GluI GCNGC 2 cut(s) 265, 330
GsaI CCCAGC 1 cut(s) 264
GsuI CTGGAG 1 cut(s) 121
HaeIII GGCC 5 cut(s) 85, 976, 986, 1061, 1100
HapII CCGG 1 cut(s) 759
HgaI GACGC 2 cut(s) 752, 1091
HhaI GCGC 2 cut(s) 797, 816
Hin1I GRCGYC 1 cut(s) 1145
Hin1II CATG 6 cut(s) 164, 931, 1097, 1152, 1192, 1219
Hin6I GCGC 2 cut(s) 795, 814
HinP1I GCGC 2 cut(s) 795, 814
HincII GTYRAC 1 cut(s) 769
HindII GTYRAC 1 cut(s) 769
HinfI GANTC 5 cut(s) 227, 302, 335, 850, 1157
HpaII CCGG 1 cut(s) 759
HphI GGTGA 6 cut(s) 109, 377, 407, 928, 1048, 1161
Hpy166II GTNNAC 3 cut(s) 769, 892, 1186
Hpy188I TCNGA 2 cut(s) 97, 226
Hpy188III TCNNGA 5 cut(s) 138, 286, 449, 713, 1161
Hpy8I GTNNAC 3 cut(s) 769, 892, 1186
HpyAV CCTTC 6 cut(s) 118, 130, 356, 898, 1158, 1220
HpyCH4IV ACGT 3 cut(s) 839, 1145, 1199
HpyCH4V TGCA 4 cut(s) 836, 1046, 1139, 1197
HpyF10VI GCNNNNNNNGC 1 cut(s) 216
HpyF3I CTNAG 5 cut(s) 80, 284, 333, 356, 969
HpySE526I ACGT 3 cut(s) 839, 1145, 1199
Hsp92I GRCGYC 1 cut(s) 1145
Hsp92II CATG 6 cut(s) 164, 931, 1097, 1152, 1192, 1219
HspAI GCGC 2 cut(s) 795, 814
Ksp22I TGATCA 2 cut(s) 1008, 1227
Kzo9I GATC 3 cut(s) 820, 1008, 1227
LguI GCTCTTC 2 cut(s) 32, 958
LmnI GCTCC 2 cut(s) 14, 1090
Lsp1109I GCAGC 2 cut(s) 276, 341
LweI GCATC 4 cut(s) 406, 681, 943, 1055
MaeI CTAG 4 cut(s) 320, 645, 798, 1161
MaeII ACGT 3 cut(s) 839, 1145, 1199
MaeIII GTNAC 8 cut(s) 395, 523, 616, 721, 826, 1036, 1141, 1167
MalI GATC 3 cut(s) 822, 1010, 1229
MboI GATC 3 cut(s) 820, 1008, 1227
MboII GAAGA 8 cut(s) 12, 19, 54, 222, 301, 700, 975, 1014
MhlI GDGCHC 2 cut(s) 188, 1075
MluCI AATT 5 cut(s) 141, 220, 868, 993, 1030
MlyI GAGTC 3 cut(s) 236, 344, 1166
MmeI TCCRAC 2 cut(s) 930, 1134
Mph1103I ATGCAT 1 cut(s) 1048
MroXI GAANNNNTTC 1 cut(s) 510
MseI TTAA 5 cut(s) 383, 444, 492, 603, 846
MspA1I CMGCKG 1 cut(s) 332
MspI CCGG 1 cut(s) 759
MspR9I CCNGG 1 cut(s) 307
MssI GTTTAAAC 1 cut(s) 493
MvaI CCWGG 1 cut(s) 307
MvnI CGCG 1 cut(s) 795
MwoI GCNNNNNNNGC 1 cut(s) 216
NdeI CATATG 1 cut(s) 748
NdeII GATC 3 cut(s) 820, 1008, 1227
NlaIII CATG 6 cut(s) 164, 931, 1097, 1152, 1192, 1219
NlaIV GGNNCC 1 cut(s) 1101
NmuCI GTSAC 6 cut(s) 395, 523, 826, 1036, 1141, 1167
NsiI ATGCAT 1 cut(s) 1048
PceI AGGCCT 1 cut(s) 976
PciSI GCTCTTC 2 cut(s) 32, 958
PdmI GAANNNNTTC 1 cut(s) 510
PfeI GAWTC 2 cut(s) 302, 850
PkrI GCNGC 2 cut(s) 266, 331
PleI GAGTC 3 cut(s) 235, 343, 1165
PmeI GTTTAAAC 1 cut(s) 493
PpsI GAGTC 3 cut(s) 235, 343, 1165
PsiI TTATAA 1 cut(s) 939
Psp124BI GAGCTC 1 cut(s) 1075
Psp1406I AACGTT 1 cut(s) 839
Psp6I CCWGG 1 cut(s) 305
PspEI GGTNACC 2 cut(s) 1036, 1167
PspFI CCCAGC 1 cut(s) 260
PspGI CCWGG 1 cut(s) 305
PspN4I GGNNCC 1 cut(s) 1101
PspPI GGNCC 2 cut(s) 1059, 1099
PvuII CAGCTG 1 cut(s) 332
RsaI GTAC 2 cut(s) 91, 476
RsaNI GTAC 2 cut(s) 90, 475
SacI GAGCTC 1 cut(s) 1075
SapI GCTCTTC 2 cut(s) 32, 958
SaqAI TTAA 5 cut(s) 383, 444, 492, 603, 846
SatI GCNGC 2 cut(s) 265, 330
Sau3AI GATC 3 cut(s) 820, 1008, 1227
Sau96I GGNCC 2 cut(s) 1059, 1099
ScaI AGTACT 1 cut(s) 476
SchI GAGTC 3 cut(s) 236, 344, 1166
ScrFI CCNGG 1 cut(s) 307
SduI GDGCHC 2 cut(s) 188, 1075
SfaNI GCATC 4 cut(s) 406, 681, 943, 1055
SmlI CTYRAG 1 cut(s) 470
SmoI CTYRAG 1 cut(s) 470
Sse9I AATT 5 cut(s) 141, 220, 868, 993, 1030
SseBI AGGCCT 1 cut(s) 976
SsiI CCGC 2 cut(s) 37, 793
SspMI CTAG 4 cut(s) 320, 645, 798, 1161
SstI GAGCTC 1 cut(s) 1075
StuI AGGCCT 1 cut(s) 976
StyD4I CCNGG 1 cut(s) 305
StyI CCWWGG 2 cut(s) 977, 1131
TaiI ACGT 3 cut(s) 842, 1148, 1202
TaqI TCGA 1 cut(s) 626
TasI AATT 5 cut(s) 141, 220, 868, 993, 1030
TatI WGTACW 1 cut(s) 474
TfiI GAWTC 2 cut(s) 302, 850
Tru1I TTAA 5 cut(s) 383, 444, 492, 603, 846
Tru9I TTAA 5 cut(s) 383, 444, 492, 603, 846
TscAI CASTG 2 cut(s) 831, 1146
TseFI GTSAC 6 cut(s) 395, 523, 826, 1036, 1141, 1167
TseI GCWGC 2 cut(s) 264, 329
Tsp45I GTSAC 6 cut(s) 395, 523, 826, 1036, 1141, 1167
TspDTI ATGAA 1 cut(s) 917
TspGWI ACGGA 1 cut(s) 1077
TspRI CASTG 2 cut(s) 831, 1146
XapI RAATTY 2 cut(s) 141, 993
XbaI TCTAGA 1 cut(s) 1160
XmnI GAANNNNTTC 1 cut(s) 510
XspI CTAG 4 cut(s) 320, 645, 798, 1161
ZraI GACGTC 1 cut(s) 1146
ZrmI AGTACT 1 cut(s) 476
Zsp2I ATGCAT 1 cut(s) 1048
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.