Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001673

Physical Location & Seq

Genomic Coordinates Forward (+)

20699642 .. 20700373

Gene Structure 732 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37400

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGAGCTTGAGGTCAGTGGCGATTCCAGCATCAGGTATTAGAGCACCATCAGAGTATCAACCATTATCAGTTGTTAGAATTGATGAGTGCTTGTCGTCGCTTGATTTTGTTCTGATTGTTGAGAAGAATGAGAATTTTTCAAGTCGTAGGTCTGCCATGAATTCTGTAAATTGCTTGGAGACTATAGAGGATGCTAGAGAATTGTTTCTAAAAATGCCTGAGAGGAACATTGTCTCTTGGAAGACTCTGATTAGTACCTTGGTCCTAAATGGTCAGGAGGAAAAGGCATTGGATGTTTATAATGCCATGATTTTGGAGGGAATGGTGCCTACACATTTTACATTAGCAATTTTGTTCAATGTGTGTGAAAGGTGGTTTGATGTGGAAAAGGGTAGGAAATGCCATATCCTTGGAATGGAGGGGTTAAAGCAGATGGACAAAATTGCGGAGGCTTTGGAAATGTTTAAGCTGATGTGTAGGAGAGGGATTTCTATTCATTCTGCTTCGTCATTTGTTGATATTGAAAAGGACCCCTCATCTGTTGCTCTTACACTTCTGAAAGCAATTATTAAACTCAAGCTAGTTTTTTCGGAGATGTATGATCCTCTTATTAGAGTTGCAAAACTGATGGTAACACGTCAACAGCAACTGTGGGGTGCAGCAGCTCAAGCTTTAGGGTTGCTAGTTGAAATCAAAGTCATGAAGAAAGGATTCCACAAGCATTTTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

243

Amino Acids

27.52

Weight (kDa)

8.55

Isoelectric Point (pI)

51.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	75 - 122	6.4e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16390
fragaria_vesca	FvH4_3g00440 FvH4_3g00470
malus_domestica	MD00G1221000.v1.1 MD05G1360400.v1.1 MD08G1234300.v1.1 MD10G1337400.v1.1 MD10G1337800.v1.1 MD10G1338000.v1.1
prunus_persica	Prupe.3G138500_v2.0.a1 Prupe.4G005200_v2.0.a1
pyrus_communis	pycom05g32720 pycom10g28680 pycom10g28700 pycom10g28720 pycom10g28750
rosa_chinensis	RchiOBHm_Chr1g0364151 RchiOBHm_Chr2g0155431 RchiOBHm_Chr4g0402181 RchiOBHm_Chr5g0000631 RchiOBHm_Chr6g0271321
rosa_laevigata	RLG00000004254 RLG00000013858 RLG00000028931 RLG00000030883
rosa_multiflora	Rmu_co8004710.1_g000001 Rmu_co8021096.1_g000001 Rmu_co8161794.1_g000001 Rmu_sc0000795.1_g000110 Rmu_sc0001141.1_g000016 Rmu_sc0003662.1_g000007 Rmu_sc0003699.1_g000009 Rmu_sc0006695.1_g000081 Rmu_sc0010255.1_g000007 Rmu_sc0011992.1_g000014 Rmu_sc0016929.1_g000002 Rmu_sc0017523.1_g000008 Rmu_sc0021532.1_g000001 Rmu_sc0029877.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001310 Rroxscaffold_1G00075570 Rroxscaffold_4G00324290
rosa_rugosa	Rorug04G0385500 Rorug07G0309300.1
rosa_samantha	Rh5AG005400 Rh5BG007000 Rh5CG005700 Rh5DG005600
rosa_wichuraiana	Rw5G000530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	300
AccB1I	GGYRCC	1 cut(s)	325
AciI	CCGC	1 cut(s)	446
AclWI	GGATC	1 cut(s)	596
AcsI	RAATTY	2 cut(s)	133, 160
AfaI	GTAC	1 cut(s)	256
AfiI	CCNNNNNNNGG	2 cut(s)	32, 415
AflIII	ACRYGT	1 cut(s)	635
AgsI	TTSAA	5 cut(s)	141, 358, 524, 689, 728
AjiI	CACGTC	1 cut(s)	638
AluBI	AGCT	5 cut(s)	6, 469, 580, 665, 671
AluI	AGCT	5 cut(s)	6, 469, 580, 665, 671
Alw21I	GWGCWC	1 cut(s)	46
Alw26I	GTCTC	2 cut(s)	173, 238
AlwI	GGATC	1 cut(s)	596
AlwNI	CAGNNNCTG	1 cut(s)	649
ApeKI	GCWGC	2 cut(s)	659, 662
ApoI	RAATTY	2 cut(s)	133, 160
Asp700I	GAANNNNTTC	2 cut(s)	204, 710
AspS9I	GGNCC	2 cut(s)	262, 529
AvaII	GGWCC	2 cut(s)	262, 529
BanI	GGYRCC	1 cut(s)	325
BbsI	GAAGAC	1 cut(s)	248
Bbv12I	GWGCWC	1 cut(s)	46
BbvI	GCAGC	2 cut(s)	671, 674
BccI	CCATC	3 cut(s)	55, 427, 622
BcoDI	GTCTC	2 cut(s)	173, 238
BfaI	CTAG	3 cut(s)	195, 581, 683
BfmI	CTRYAG	1 cut(s)	183
BisI	GCNGC	2 cut(s)	660, 663
BlsI	GCNGC	2 cut(s)	661, 664
Bme18I	GGWCC	2 cut(s)	262, 529
BmgBI	CACGTC	1 cut(s)	638
BmgT120I	GGNCC	2 cut(s)	262, 529
BmiI	GGNNCC	2 cut(s)	327, 531
BmsI	GCATC	2 cut(s)	38, 181
BpiI	GAAGAC	1 cut(s)	248
BpuEI	CTTGAG	3 cut(s)	28, 560, 651
BsaJI	CCNNGG	2 cut(s)	258, 409
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 415
BseDI	CCNNGG	2 cut(s)	258, 409
BseGI	GGATG	2 cut(s)	196, 298
BseLI	CCNNNNNNNGG	2 cut(s)	32, 415
BseMII	CTCAG	1 cut(s)	210
BseXI	GCAGC	2 cut(s)	671, 674
BsgI	GTGCAG	1 cut(s)	678
BshNI	GGYRCC	1 cut(s)	325
BsiHKAI	GWGCWC	1 cut(s)	46
BslI	CCNNNNNNNGG	2 cut(s)	32, 415
BsmAI	GTCTC	2 cut(s)	173, 238
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp143I	GATC	1 cut(s)	601
BspACI	CCGC	1 cut(s)	446
BspCNI	CTCAG	1 cut(s)	211
BspHI	TCATGA	1 cut(s)	699
BspLI	GGNNCC	2 cut(s)	327, 531
BspPI	GGATC	1 cut(s)	596
BspT107I	GGYRCC	1 cut(s)	325
BssECI	CCNNGG	2 cut(s)	258, 409
BssMI	GATC	1 cut(s)	601
BssT1I	CCWWGG	2 cut(s)	258, 409
Bst4CI	ACNGT	1 cut(s)	651
BstDEI	CTNAG	1 cut(s)	219
BstF5I	GGATG	2 cut(s)	196, 298
BstKTI	GATC	1 cut(s)	604
BstMAI	GTCTC	2 cut(s)	173, 238
BstMBI	GATC	1 cut(s)	601
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 668
BstSFI	CTRYAG	1 cut(s)	183
BstV1I	GCAGC	2 cut(s)	671, 674
BstV2I	GAAGAC	1 cut(s)	248
BstXI	CCANNNNNNTGG	2 cut(s)	313, 410
BtrI	CACGTC	1 cut(s)	638
BtsCI	GGATG	2 cut(s)	196, 298
BtsIMutI	CAGTG	1 cut(s)	21
CaiI	CAGNNNCTG	1 cut(s)	649
CciI	TCATGA	1 cut(s)	699
Cfr13I	GGNCC	2 cut(s)	262, 529
Csp6I	GTAC	1 cut(s)	255
CviAII	CATG	3 cut(s)	157, 307, 700
CviJI	RGCY	6 cut(s)	6, 452, 469, 580, 665, 671
CviKI_1	RGCY	6 cut(s)	6, 452, 469, 580, 665, 671
CviQI	GTAC	1 cut(s)	255
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	1 cut(s)	603
DpnII	GATC	1 cut(s)	601
Eco130I	CCWWGG	2 cut(s)	258, 409
Eco47I	GGWCC	2 cut(s)	262, 529
EcoO109I	RGGNCCY	1 cut(s)	529
EcoRI	GAATTC	1 cut(s)	160
EcoT14I	CCWWGG	2 cut(s)	258, 409
ErhI	CCWWGG	2 cut(s)	258, 409
FaeI	CATG	3 cut(s)	160, 310, 703
FaiI	YATR	7 cut(s)	158, 185, 300, 308, 405, 600, 701
FatI	CATG	3 cut(s)	156, 306, 699
Fnu4HI	GCNGC	2 cut(s)	660, 663
FokI	GGATG	2 cut(s)	203, 305
Fsp4HI	GCNGC	2 cut(s)	660, 663
FspBI	CTAG	3 cut(s)	195, 581, 683
GluI	GCNGC	2 cut(s)	660, 663
Hin1II	CATG	3 cut(s)	160, 310, 703
HincII	GTYRAC	1 cut(s)	641
HindII	GTYRAC	1 cut(s)	641
HindIII	AAGCTT	1 cut(s)	669
HinfI	GANTC	3 cut(s)	22, 244, 711
Hpy166II	GTNNAC	1 cut(s)	641
Hpy188I	TCNGA	5 cut(s)	52, 114, 249, 558, 592
Hpy188III	TCNNGA	2 cut(s)	275, 700
Hpy8I	GTNNAC	1 cut(s)	641
Hpy99I	CGWCG	1 cut(s)	100
HpyCH4III	ACNGT	1 cut(s)	651
HpyCH4IV	ACGT	1 cut(s)	637
HpyCH4V	TGCA	2 cut(s)	620, 659
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 668
HpyF3I	CTNAG	1 cut(s)	219
HpySE526I	ACGT	1 cut(s)	637
Hsp92II	CATG	3 cut(s)	160, 310, 703
Kzo9I	GATC	1 cut(s)	601
LpnPI	CCDG	4 cut(s)	18, 39, 231, 260
Lsp1109I	GCAGC	2 cut(s)	671, 674
LweI	GCATC	2 cut(s)	38, 181
MaeI	CTAG	3 cut(s)	195, 581, 683
MaeII	ACGT	1 cut(s)	637
MaeIII	GTNAC	1 cut(s)	631
MalI	GATC	1 cut(s)	603
MboI	GATC	1 cut(s)	601
MboII	GAAGA	3 cut(s)	136, 253, 715
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	8 cut(s)	78, 133, 160, 169, 200, 348, 441, 564
MlyI	GAGTC	1 cut(s)	238
MroXI	GAANNNNTTC	2 cut(s)	204, 710
MseI	TTAA	3 cut(s)	425, 465, 570
MwoI	GCNNNNNNNGC	2 cut(s)	26, 668
NdeII	GATC	1 cut(s)	601
NlaIII	CATG	3 cut(s)	160, 310, 703
NlaIV	GGNNCC	2 cut(s)	327, 531
PagI	TCATGA	1 cut(s)	699
PdmI	GAANNNNTTC	2 cut(s)	204, 710
PfeI	GAWTC	2 cut(s)	22, 711
PkrI	GCNGC	2 cut(s)	661, 664
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
PpuMI	RGGWCCY	1 cut(s)	529
PsiI	TTATAA	1 cut(s)	300
Psp5II	RGGWCCY	1 cut(s)	529
PspN4I	GGNNCC	2 cut(s)	327, 531
PspPI	GGNCC	2 cut(s)	262, 529
PspPPI	RGGWCCY	1 cut(s)	529
PstNI	CAGNNNCTG	1 cut(s)	649
RsaI	GTAC	1 cut(s)	256
RsaNI	GTAC	1 cut(s)	255
SaqAI	TTAA	3 cut(s)	425, 465, 570
SatI	GCNGC	2 cut(s)	660, 663
Sau3AI	GATC	1 cut(s)	601
Sau96I	GGNCC	2 cut(s)	262, 529
SchI	GAGTC	1 cut(s)	238
SduI	GDGCHC	1 cut(s)	46
SfaNI	GCATC	2 cut(s)	38, 181
SfcI	CTRYAG	1 cut(s)	183
SinI	GGWCC	2 cut(s)	262, 529
SmlI	CTYRAG	3 cut(s)	7, 575, 666
SmoI	CTYRAG	3 cut(s)	7, 575, 666
Sse9I	AATT	8 cut(s)	78, 133, 160, 169, 200, 348, 441, 564
SsiI	CCGC	1 cut(s)	446
SspMI	CTAG	3 cut(s)	195, 581, 683
StyI	CCWWGG	2 cut(s)	258, 409
TaaI	ACNGT	1 cut(s)	651
TaiI	ACGT	1 cut(s)	640
TasI	AATT	8 cut(s)	78, 133, 160, 169, 200, 348, 441, 564
TfiI	GAWTC	2 cut(s)	22, 711
Tru1I	TTAA	3 cut(s)	425, 465, 570
Tru9I	TTAA	3 cut(s)	425, 465, 570
TscAI	CASTG	1 cut(s)	21
TseI	GCWGC	2 cut(s)	659, 662
TspDTI	ATGAA	3 cut(s)	173, 485, 716
TspRI	CASTG	1 cut(s)	21
VpaK11BI	GGWCC	2 cut(s)	262, 529
XapI	RAATTY	2 cut(s)	133, 160
XmnI	GAANNNNTTC	2 cut(s)	204, 710
XspI	CTAG	3 cut(s)	195, 581, 683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.