Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000795.1

Orthogroup ID

OG0001673

Physical Location & Seq

Genomic Coordinates Reverse (-)

480375 .. 481349

Gene Structure 975 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000795.1_g000110.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

atggatgcgcttgttgacgacaacgagcctgacgacaccatttatcgccagtccccacctcaggtgagcttaaggtcagtggcatttccagcgtccagtgttaaagcaccattagagtgtcacccattatcagttgttagaattgctgagtgcttgtccttgcttgattttgttctgattgttgagaagaatgagaagttttcaagtcgtagtcctgccatgaattctgtatattgcttggatactatagaggatgctggagaattgtttctaaaaatgcctgagaggaacattgtctcgtggaaacctctgagtagtgctttggtcctaaatggtcaggaggaaaaggcgttgggtgtttatgatgccatgattttggagggaatggagttaaatgttattctatataacactcttttgcttttgtgtgctgacattggctacactgatcaagctattaagattttccaagacgtgaagagttctgaaacttggaaggccgatagttggacattttcatccatgatgaccatatattcctgtagtgggaaggtctcagaggcaaggaggacgttgaatgagatgatggatgctggtttccagcttaatatccttattttgacatcactaatacaatgcaatgggaaggccaagcgtactgatgatgttgtcggggcattcaatcaactacaacaatggggcataactcctgatgagcgtttctgtggtcgtctcctgaatgtgatgactcaaacacctaaggatgaactatctaagttgactgattgcattgagcatggtaatgagaagcttgggtatgttgtaagatttctggtagagaagcaagacagtagtcaaaacttcaggaaggaagcatcagaactttttaattcaattggttccaataagaaggcctactgcaattgcttgattgggtcttcgagtgaacctccagctcttgaagagagcttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006417 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031425 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

324

Amino Acids

36.14

Weight (kDa)

4.73

Isoelectric Point (pI)

49.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16390
fragaria_vesca	FvH4_3g00440 FvH4_3g00470
malus_domestica	MD00G1221000.v1.1 MD05G1360400.v1.1 MD08G1234300.v1.1 MD10G1337400.v1.1 MD10G1337800.v1.1 MD10G1338000.v1.1
prunus_persica	Prupe.3G138500_v2.0.a1 Prupe.4G005200_v2.0.a1
pyrus_communis	pycom05g32720 pycom10g28680 pycom10g28700 pycom10g28720 pycom10g28750
rosa_chinensis	RchiOBHm_Chr1g0364151 RchiOBHm_Chr2g0155431 RchiOBHm_Chr4g0402181 RchiOBHm_Chr5g0000631 RchiOBHm_Chr6g0271321
rosa_laevigata	RLG00000004254 RLG00000013858 RLG00000028931 RLG00000030883
rosa_multiflora	Rmu_co8004710.1_g000001 Rmu_co8021096.1_g000001 Rmu_co8161794.1_g000001 Rmu_sc0000795.1_g000110 Rmu_sc0001141.1_g000016 Rmu_sc0003662.1_g000007 Rmu_sc0003699.1_g000009 Rmu_sc0006695.1_g000081 Rmu_sc0010255.1_g000007 Rmu_sc0011992.1_g000014 Rmu_sc0016929.1_g000002 Rmu_sc0017523.1_g000008 Rmu_sc0021532.1_g000001 Rmu_sc0029877.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001310 Rroxscaffold_1G00075570 Rroxscaffold_4G00324290
rosa_rugosa	Rorug04G0385500 Rorug07G0309300.1
rosa_samantha	Rh5AG005400 Rh5BG007000 Rh5CG005700 Rh5DG005600
rosa_wichuraiana	Rw5G000530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	223
AcuI	CTGAAG	1 cut(s)	847
AfaI	GTAC	1 cut(s)	658
AfiI	CCNNNNNNNGG	3 cut(s)	61, 507, 546
AflII	CTTAAG	1 cut(s)	70
AgsI	TTSAA	5 cut(s)	204, 577, 682, 894, 962
AjiI	CACGTC	1 cut(s)	475
AluBI	AGCT	6 cut(s)	69, 455, 604, 811, 956, 969
AluI	AGCT	6 cut(s)	69, 455, 604, 811, 956, 969
Alw26I	GTCTC	3 cut(s)	301, 559, 737
AoxI	GGCC	3 cut(s)	498, 648, 912
ApoI	RAATTY	1 cut(s)	223
Asp700I	GAANNNNTTC	1 cut(s)	267
AspLEI	GCGC	1 cut(s)	10
AspS9I	GGNCC	1 cut(s)	325
AsuHPI	GGTGA	2 cut(s)	76, 113
AvaII	GGWCC	1 cut(s)	325
AxyI	CCTNAGG	2 cut(s)	60, 759
BauI	CACGAG	1 cut(s)	298
BbsI	GAAGAC	1 cut(s)	930
BccI	CCATC	1 cut(s)	580
BciVI	GTATCC	1 cut(s)	235
BclI	TGATCA	1 cut(s)	448
BcoDI	GTCTC	3 cut(s)	301, 559, 737
BfmI	CTRYAG	2 cut(s)	246, 541
BfrI	CTTAAG	1 cut(s)	70
BfuI	GTATCC	1 cut(s)	235
Bme18I	GGWCC	1 cut(s)	325
BmgBI	CACGTC	1 cut(s)	475
BmgT120I	GGNCC	1 cut(s)	325
BmiI	GGNNCC	1 cut(s)	901
BmsI	GCATC	4 cut(s)	244, 355, 580, 884
BoxI	GACNNNNGTC	1 cut(s)	852
BpiI	GAAGAC	1 cut(s)	930
BplI	GAGNNNNNCTC	2 cut(s)	934, 966
BpmI	CTGGAG	2 cut(s)	279, 936
BsaI	GGTCTC	1 cut(s)	559
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 507, 546
Bse1I	ACTGG	2 cut(s)	49, 96
Bse21I	CCTNAGG	2 cut(s)	60, 759
Bse3DI	GCAATG	1 cut(s)	646
BseGI	GGATG	5 cut(s)	10, 259, 518, 595, 769
BseLI	CCNNNNNNNGG	3 cut(s)	61, 507, 546
BseMI	GCAATG	1 cut(s)	646
BseMII	CTCAG	5 cut(s)	74, 138, 273, 302, 570
BseNI	ACTGG	2 cut(s)	49, 96
BshFI	GGCC	3 cut(s)	500, 650, 914
BslFI	GGGAC	1 cut(s)	37
BslI	CCNNNNNNNGG	3 cut(s)	61, 507, 546
BsmAI	GTCTC	3 cut(s)	301, 559, 737
BsmBI	CGTCTC	1 cut(s)	737
BsmFI	GGGAC	1 cut(s)	37
BsmI	GAATGC	1 cut(s)	677
BsnI	GGCC	3 cut(s)	500, 650, 914
Bso31I	GGTCTC	1 cut(s)	559
Bsp143I	GATC	1 cut(s)	448
BspANI	GGCC	3 cut(s)	500, 650, 914
BspCNI	CTCAG	5 cut(s)	73, 139, 274, 303, 569
BspLI	GGNNCC	1 cut(s)	901
BspTI	CTTAAG	1 cut(s)	70
BspTNI	GGTCTC	1 cut(s)	559
BsrDI	GCAATG	1 cut(s)	646
BsrI	ACTGG	2 cut(s)	49, 96
BssMI	GATC	1 cut(s)	448
BssSI	CACGAG	1 cut(s)	298
Bst2BI	CACGAG	1 cut(s)	298
Bst4CI	ACNGT	1 cut(s)	851
Bst6I	CTCTTC	2 cut(s)	473, 957
BstAFI	CTTAAG	1 cut(s)	70
BstDEI	CTNAG	7 cut(s)	60, 147, 282, 311, 556, 759, 774
BstF5I	GGATG	5 cut(s)	10, 259, 518, 595, 769
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	1 cut(s)	451
BstMAI	GTCTC	3 cut(s)	301, 559, 737
BstMBI	GATC	1 cut(s)	448
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstPAI	GACNNNNGTC	1 cut(s)	852
BstSFI	CTRYAG	2 cut(s)	246, 541
BstV2I	GAAGAC	1 cut(s)	930
BstXI	CCANNNNNNTGG	1 cut(s)	376
Bsu36I	CCTNAGG	2 cut(s)	60, 759
BsuI	GTATCC	1 cut(s)	235
BsuRI	GGCC	3 cut(s)	500, 650, 914
BtrI	CACGTC	1 cut(s)	475
BtsCI	GGATG	5 cut(s)	10, 259, 518, 595, 769
BtsIMutI	CAGTG	3 cut(s)	84, 103, 444
CfoI	GCGC	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	325
CseI	GACGC	1 cut(s)	81
Csp6I	GTAC	1 cut(s)	657
CviAII	CATG	4 cut(s)	220, 370, 523, 797
CviQI	GTAC	1 cut(s)	657
DdeI	CTNAG	7 cut(s)	60, 147, 282, 311, 556, 759, 774
DpnI	GATC	1 cut(s)	450
DpnII	GATC	1 cut(s)	448
Eam1104I	CTCTTC	2 cut(s)	473, 957
EarI	CTCTTC	2 cut(s)	473, 957
Eco147I	AGGCCT	1 cut(s)	914
Eco31I	GGTCTC	1 cut(s)	559
Eco47I	GGWCC	1 cut(s)	325
Eco57I	CTGAAG	1 cut(s)	847
Eco81I	CCTNAGG	2 cut(s)	60, 759
EcoRI	GAATTC	1 cut(s)	223
Esp3I	CGTCTC	1 cut(s)	737
FaeI	CATG	4 cut(s)	223, 373, 526, 800
FaqI	GGGAC	1 cut(s)	37
FatI	CATG	4 cut(s)	219, 369, 522, 796
FbaI	TGATCA	1 cut(s)	448
FokI	GGATG	5 cut(s)	17, 266, 505, 602, 776
GlaI	GCGC	1 cut(s)	9
GsuI	CTGGAG	2 cut(s)	279, 936
HaeIII	GGCC	3 cut(s)	500, 650, 914
HgaI	GACGC	1 cut(s)	81
HhaI	GCGC	1 cut(s)	10
Hin1II	CATG	4 cut(s)	223, 373, 526, 800
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HincII	GTYRAC	2 cut(s)	16, 780
HindII	GTYRAC	2 cut(s)	16, 780
HindIII	AAGCTT	1 cut(s)	809
HinfI	GANTC	1 cut(s)	748
HphI	GGTGA	2 cut(s)	76, 113
Hpy166II	GTNNAC	3 cut(s)	16, 780, 947
Hpy188I	TCNGA	5 cut(s)	177, 312, 487, 559, 880
Hpy188III	TCNNGA	5 cut(s)	338, 710, 736, 865, 959
Hpy8I	GTNNAC	3 cut(s)	16, 780, 947
HpyAV	CCTTC	5 cut(s)	490, 544, 640, 862, 904
HpyCH4III	ACNGT	1 cut(s)	851
HpyCH4IV	ACGT	2 cut(s)	474, 572
HpyCH4V	TGCA	3 cut(s)	639, 789, 921
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpyF3I	CTNAG	7 cut(s)	60, 147, 282, 311, 556, 759, 774
HpySE526I	ACGT	2 cut(s)	474, 572
Hsp92II	CATG	4 cut(s)	223, 373, 526, 800
HspAI	GCGC	1 cut(s)	8
Ksp22I	TGATCA	1 cut(s)	448
Kzo9I	GATC	1 cut(s)	448
LweI	GCATC	4 cut(s)	244, 355, 580, 884
MaeII	ACGT	2 cut(s)	474, 572
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	1 cut(s)	450
MboI	GATC	1 cut(s)	448
MboII	GAAGA	4 cut(s)	199, 490, 930, 974
MfeI	CAATTG	2 cut(s)	894, 922
MluCI	AATT	6 cut(s)	141, 223, 263, 889, 894, 922
MlyI	GAGTC	1 cut(s)	742
MmeI	TCCRAC	1 cut(s)	488
MnlI	CCTC	9 cut(s)	69, 244, 279, 318, 334, 373, 553, 561, 960
MroXI	GAANNNNTTC	1 cut(s)	267
MseI	TTAA	6 cut(s)	71, 102, 392, 459, 606, 888
MslI	CAYNNNNRTG	2 cut(s)	115, 801
MspCI	CTTAAG	1 cut(s)	70
MunI	CAATTG	2 cut(s)	894, 922
Mva1269I	GAATGC	1 cut(s)	677
MwoI	GCNNNNNNNGC	1 cut(s)	89
NdeII	GATC	1 cut(s)	448
NlaIII	CATG	4 cut(s)	223, 373, 526, 800
NlaIV	GGNNCC	1 cut(s)	901
NmuCI	GTSAC	1 cut(s)	119
PceI	AGGCCT	1 cut(s)	914
PcsI	WCGNNNNNNNCGW	1 cut(s)	30
PctI	GAATGC	1 cut(s)	677
PdmI	GAANNNNTTC	1 cut(s)	267
PleI	GAGTC	1 cut(s)	742
PpsI	GAGTC	1 cut(s)	742
PshAI	GACNNNNGTC	1 cut(s)	852
PspN4I	GGNNCC	1 cut(s)	901
PspPI	GGNCC	1 cut(s)	325
RsaI	GTAC	1 cut(s)	658
RsaNI	GTAC	1 cut(s)	657
RseI	CAYNNNNRTG	2 cut(s)	115, 801
SaqAI	TTAA	6 cut(s)	71, 102, 392, 459, 606, 888
Sau3AI	GATC	1 cut(s)	448
Sau96I	GGNCC	1 cut(s)	325
SchI	GAGTC	1 cut(s)	742
SfaNI	GCATC	4 cut(s)	244, 355, 580, 884
SfcI	CTRYAG	2 cut(s)	246, 541
SinI	GGWCC	1 cut(s)	325
SmiMI	CAYNNNNRTG	2 cut(s)	115, 801
SmlI	CTYRAG	1 cut(s)	70
SmoI	CTYRAG	1 cut(s)	70
Sse9I	AATT	6 cut(s)	141, 223, 263, 889, 894, 922
SseBI	AGGCCT	1 cut(s)	914
StuI	AGGCCT	1 cut(s)	914
TaaI	ACNGT	1 cut(s)	851
TaiI	ACGT	2 cut(s)	477, 575
TaqI	TCGA	1 cut(s)	941
TasI	AATT	6 cut(s)	141, 223, 263, 889, 894, 922
Tru1I	TTAA	6 cut(s)	71, 102, 392, 459, 606, 888
Tru9I	TTAA	6 cut(s)	71, 102, 392, 459, 606, 888
TscAI	CASTG	3 cut(s)	84, 103, 451
TseFI	GTSAC	1 cut(s)	119
Tsp45I	GTSAC	1 cut(s)	119
TspDTI	ATGAA	3 cut(s)	236, 507, 780
TspRI	CASTG	3 cut(s)	84, 103, 451
Vha464I	CTTAAG	1 cut(s)	70
VpaK11BI	GGWCC	1 cut(s)	325
XapI	RAATTY	1 cut(s)	223
XmnI	GAANNNNTTC	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.