Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010255.1

Orthogroup ID

OG0001673

Physical Location & Seq

Genomic Coordinates Forward (+)

14975 .. 15307

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010255.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

atgaatgcgcttgtcgacaacaacggtccagactgttccacttatcgccagtctccacctcaaattggaggagcatattggacgagcttgagtttagtggagattctagtgtcaggtattaaagcattagagtgtcatccattatcagttcttagaattgatgagtgcttgccttcgcttgattatgttctgattgttgagaagaatgagaagttttcatgtcatagtcctaccatgaattatgtgaattgcttggagagtgttcagcttacgcaacatattccttctgccactggtttgcacctgccgcatgtgtccctctatatgttataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

BES1_N Glyco_hydro_14

Protein Analysis

110

Amino Acids

12.17

Weight (kDa)

5.32

Isoelectric Point (pI)

58.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16390
fragaria_vesca	FvH4_3g00440 FvH4_3g00470
malus_domestica	MD00G1221000.v1.1 MD05G1360400.v1.1 MD08G1234300.v1.1 MD10G1337400.v1.1 MD10G1337800.v1.1 MD10G1338000.v1.1
prunus_persica	Prupe.3G138500_v2.0.a1 Prupe.4G005200_v2.0.a1
pyrus_communis	pycom05g32720 pycom10g28680 pycom10g28700 pycom10g28720 pycom10g28750
rosa_chinensis	RchiOBHm_Chr1g0364151 RchiOBHm_Chr2g0155431 RchiOBHm_Chr4g0402181 RchiOBHm_Chr5g0000631 RchiOBHm_Chr6g0271321
rosa_laevigata	RLG00000004254 RLG00000013858 RLG00000028931 RLG00000030883
rosa_multiflora	Rmu_co8004710.1_g000001 Rmu_co8021096.1_g000001 Rmu_co8161794.1_g000001 Rmu_sc0000795.1_g000110 Rmu_sc0001141.1_g000016 Rmu_sc0003662.1_g000007 Rmu_sc0003699.1_g000009 Rmu_sc0006695.1_g000081 Rmu_sc0010255.1_g000007 Rmu_sc0011992.1_g000014 Rmu_sc0016929.1_g000002 Rmu_sc0017523.1_g000008 Rmu_sc0021532.1_g000001 Rmu_sc0029877.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001310 Rroxscaffold_1G00075570 Rroxscaffold_4G00324290
rosa_rugosa	Rorug04G0385500 Rorug07G0309300.1
rosa_samantha	Rh5AG005400 Rh5BG007000 Rh5CG005700 Rh5DG005600
rosa_wichuraiana	Rw5G000530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	331
AarI	CACCTGC	1 cut(s)	312
Acc36I	ACCTGC	1 cut(s)	312
AccI	GTMKAC	1 cut(s)	15
AciI	CCGC	1 cut(s)	308
AfiI	CCNNNNNNNGG	1 cut(s)	65
AluBI	AGCT	2 cut(s)	87, 268
AluI	AGCT	2 cut(s)	87, 268
Alw26I	GTCTC	1 cut(s)	57
AspLEI	GCGC	1 cut(s)	10
AspS9I	GGNCC	1 cut(s)	26
AvaII	GGWCC	1 cut(s)	26
BcoDI	GTCTC	1 cut(s)	57
BfaI	CTAG	1 cut(s)	107
BfuAI	ACCTGC	1 cut(s)	312
BisI	GCNGC	1 cut(s)	308
BlsI	GCNGC	1 cut(s)	309
Bme18I	GGWCC	1 cut(s)	26
BmgT120I	GGNCC	1 cut(s)	26
BpuEI	CTTGAG	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
Bse1I	ACTGG	2 cut(s)	49, 298
BseGI	GGATG	1 cut(s)	136
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseNI	ACTGG	2 cut(s)	49, 298
BseRI	GAGGAG	1 cut(s)	84
BslFI	GGGAC	1 cut(s)	301
BslI	CCNNNNNNNGG	1 cut(s)	65
BsmAI	GTCTC	1 cut(s)	57
BsmFI	GGGAC	1 cut(s)	301
BsmI	GAATGC	1 cut(s)	10
BspACI	CCGC	1 cut(s)	308
BspMI	ACCTGC	1 cut(s)	312
BsrI	ACTGG	2 cut(s)	49, 298
Bst4CI	ACNGT	2 cut(s)	26, 35
BstC8I	GCNNGC	1 cut(s)	170
BstDEI	CTNAG	1 cut(s)	152
BstF5I	GGATG	1 cut(s)	136
BstHHI	GCGC	1 cut(s)	10
BstMAI	GTCTC	1 cut(s)	57
BstMWI	GCNNNNNNNGC	1 cut(s)	307
BstNSI	RCATGY	1 cut(s)	314
BtsCI	GGATG	1 cut(s)	136
BtsIMutI	CAGTG	1 cut(s)	291
BveI	ACCTGC	1 cut(s)	312
Cac8I	GCNNGC	1 cut(s)	170
CfoI	GCGC	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	26
CviAII	CATG	3 cut(s)	219, 235, 311
CviJI	RGCY	2 cut(s)	87, 268
CviKI_1	RGCY	2 cut(s)	87, 268
DdeI	CTNAG	1 cut(s)	152
Eco47I	GGWCC	1 cut(s)	26
FaeI	CATG	3 cut(s)	222, 238, 314
FaqI	GGGAC	1 cut(s)	301
FatI	CATG	3 cut(s)	218, 234, 310
FblI	GTMKAC	1 cut(s)	15
Fnu4HI	GCNGC	1 cut(s)	308
FokI	GGATG	1 cut(s)	123
Fsp4HI	GCNGC	1 cut(s)	308
FspBI	CTAG	1 cut(s)	107
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	1 cut(s)	308
HhaI	GCGC	1 cut(s)	10
Hin1II	CATG	3 cut(s)	222, 238, 314
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HincII	GTYRAC	1 cut(s)	16
HindII	GTYRAC	1 cut(s)	16
HinfI	GANTC	1 cut(s)	103
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	1 cut(s)	192
Hpy188III	TCNNGA	1 cut(s)	29
Hpy8I	GTNNAC	1 cut(s)	16
HpyAV	CCTTC	2 cut(s)	183, 294
HpyCH4III	ACNGT	2 cut(s)	26, 35
HpyCH4V	TGCA	1 cut(s)	301
HpyF10VI	GCNNNNNNNGC	1 cut(s)	307
HpyF3I	CTNAG	1 cut(s)	152
Hsp92II	CATG	3 cut(s)	222, 238, 314
HspAI	GCGC	1 cut(s)	8
LmnI	GCTCC	1 cut(s)	71
LpnPI	CCDG	5 cut(s)	42, 62, 99, 279, 317
MaeI	CTAG	1 cut(s)	107
MboII	GAAGA	1 cut(s)	214
MluCI	AATT	4 cut(s)	63, 156, 238, 247
MnlI	CCTC	3 cut(s)	62, 69, 329
MseI	TTAA	1 cut(s)	120
MslI	CAYNNNNRTG	1 cut(s)	130
Mva1269I	GAATGC	1 cut(s)	10
MwoI	GCNNNNNNNGC	1 cut(s)	307
NlaIII	CATG	3 cut(s)	222, 238, 314
NspI	RCATGY	1 cut(s)	314
PaqCI	CACCTGC	1 cut(s)	312
PctI	GAATGC	1 cut(s)	10
PfeI	GAWTC	1 cut(s)	103
PkrI	GCNGC	1 cut(s)	309
PsiI	TTATAA	1 cut(s)	331
PspPI	GGNCC	1 cut(s)	26
RseI	CAYNNNNRTG	1 cut(s)	130
SalI	GTCGAC	1 cut(s)	14
SaqAI	TTAA	1 cut(s)	120
SatI	GCNGC	1 cut(s)	308
Sau96I	GGNCC	1 cut(s)	26
SetI	ASST	5 cut(s)	61, 89, 118, 270, 306
SinI	GGWCC	1 cut(s)	26
SmiMI	CAYNNNNRTG	1 cut(s)	130
SmlI	CTYRAG	1 cut(s)	88
SmoI	CTYRAG	1 cut(s)	88
Sse9I	AATT	4 cut(s)	63, 156, 238, 247
SsiI	CCGC	1 cut(s)	308
SspMI	CTAG	1 cut(s)	107
TaaI	ACNGT	2 cut(s)	26, 35
TaqI	TCGA	1 cut(s)	15
TasI	AATT	4 cut(s)	63, 156, 238, 247
TauI	GCSGC	1 cut(s)	310
TfiI	GAWTC	1 cut(s)	103
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TscAI	CASTG	1 cut(s)	298
TspDTI	ATGAA	3 cut(s)	17, 207, 251
TspRI	CASTG	1 cut(s)	298
VpaK11BI	GGWCC	1 cut(s)	26
XceI	RCATGY	1 cut(s)	314
XmiI	GTMKAC	1 cut(s)	15
XspI	CTAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.