Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001673

Physical Location & Seq

Genomic Coordinates Forward (+)

30834119 .. 30835022

Gene Structure 904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24339

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGATTTCAGAGGGAATGGTACCTACACATTTTGCATTAGCAATTTTGTTCAGTGCTTGTGGAGGGTGGTTAGATGTGGAGAAGGGTAGGAAATGTTATAGCCTTGTGGAGCAAACTGGCCTTGAGGTAAATCTGTATGTGGGGAATACTTTACTCTGCATGTATGCTAAGTGTGAAGTCATTAAGGATACAATGCAGGTTTTCGGGAAAATGGCTAAGCCGAATGAGATTACTGTTACAGCTAGAATGGGGGGGTTAAAACAGATGGACAAAATTGCGGAGGCTTTGGAAATGTTTTGGCTGATGTGTAGGACAGGAGTGTGTGTTGATTCTACTCCGTTGTTTGTTGATATTGAAAAGGACCCCTCATTTGTTGCTCTTTCACTTCTAAAAGCAAGTAATAAATGCAAGCTAGTTCAGCAACTGTGGGTGGCAGCAACTCAACCTTTGGGTTTGCTGGTTGAAATCAAAGTCATGAAGAAAGGATTCCACAAGCATATCAATAGTGTATTACAAGTGACTGAAAGCATCTTGCAGTCTGCCATCGGTGTTGTCACTCATGATTCTCCTCATGAAATTGCCATTCCTTTCTGGAATGAGGGATCTCAAGAATATATGGGAAGCATTTTCTGTCTATCTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

214

Amino Acids

23.7

Weight (kDa)

6.21

Isoelectric Point (pI)

43.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16390
fragaria_vesca	FvH4_3g00440 FvH4_3g00470
malus_domestica	MD00G1221000.v1.1 MD05G1360400.v1.1 MD08G1234300.v1.1 MD10G1337400.v1.1 MD10G1337800.v1.1 MD10G1338000.v1.1
prunus_persica	Prupe.3G138500_v2.0.a1 Prupe.4G005200_v2.0.a1
pyrus_communis	pycom05g32720 pycom10g28680 pycom10g28700 pycom10g28720 pycom10g28750
rosa_chinensis	RchiOBHm_Chr1g0364151 RchiOBHm_Chr2g0155431 RchiOBHm_Chr4g0402181 RchiOBHm_Chr5g0000631 RchiOBHm_Chr6g0271321
rosa_laevigata	RLG00000004254 RLG00000013858 RLG00000028931 RLG00000030883
rosa_multiflora	Rmu_co8004710.1_g000001 Rmu_co8021096.1_g000001 Rmu_co8161794.1_g000001 Rmu_sc0000795.1_g000110 Rmu_sc0001141.1_g000016 Rmu_sc0003662.1_g000007 Rmu_sc0003699.1_g000009 Rmu_sc0006695.1_g000081 Rmu_sc0010255.1_g000007 Rmu_sc0011992.1_g000014 Rmu_sc0016929.1_g000002 Rmu_sc0017523.1_g000008 Rmu_sc0021532.1_g000001 Rmu_sc0029877.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001310 Rroxscaffold_1G00075570 Rroxscaffold_4G00324290
rosa_rugosa	Rorug04G0385500 Rorug07G0309300.1
rosa_samantha	Rh5AG005400 Rh5BG007000 Rh5CG005700 Rh5DG005600
rosa_wichuraiana	Rw5G000530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	187
Acc65I	GGTACC	1 cut(s)	19
AccB1I	GGYRCC	1 cut(s)	19
AciI	CCGC	1 cut(s)	278
AclWI	GGATC	1 cut(s)	610
AfaI	GTAC	1 cut(s)	21
AgsI	TTSAA	2 cut(s)	356, 464
AluBI	AGCT	2 cut(s)	242, 412
AluI	AGCT	2 cut(s)	242, 412
AlwI	GGATC	1 cut(s)	610
AlwNI	CAGNNNCTG	1 cut(s)	424
AoxI	GGCC	1 cut(s)	118
ApeKI	GCWGC	1 cut(s)	434
ArsI	GACNNNNNNTTYG	2 cut(s)	353, 385
Asp700I	GAANNNNTTC	1 cut(s)	485
Asp718I	GGTACC	1 cut(s)	19
AspS9I	GGNCC	1 cut(s)	361
AvaII	GGWCC	1 cut(s)	361
BanI	GGYRCC	1 cut(s)	19
BbvI	GCAGC	1 cut(s)	446
BccI	CCATC	2 cut(s)	259, 551
BciVI	GTATCC	1 cut(s)	181
BfaI	CTAG	2 cut(s)	243, 413
BfuAI	ACCTGC	1 cut(s)	187
BfuI	GTATCC	1 cut(s)	181
BisI	GCNGC	1 cut(s)	435
BlpI	GCTNAGC	1 cut(s)	216
BlsI	GCNGC	1 cut(s)	436
Bme18I	GGWCC	1 cut(s)	361
BmgT120I	GGNCC	1 cut(s)	361
BmiI	GGNNCC	2 cut(s)	21, 363
BmsI	GCATC	1 cut(s)	537
Bpu1102I	GCTNAGC	1 cut(s)	216
BpuEI	CTTGAG	2 cut(s)	143, 591
BsaXI	ACNNNNNCTCC	2 cut(s)	309, 339
Bse1I	ACTGG	1 cut(s)	121
BseNI	ACTGG	1 cut(s)	121
BseRI	GAGGAG	1 cut(s)	558
BseXI	GCAGC	1 cut(s)	446
BshFI	GGCC	1 cut(s)	120
BshNI	GGYRCC	1 cut(s)	19
BsnI	GGCC	1 cut(s)	120
Bsp143I	GATC	1 cut(s)	602
Bsp1720I	GCTNAGC	1 cut(s)	216
BspACI	CCGC	1 cut(s)	278
BspANI	GGCC	1 cut(s)	120
BspHI	TCATGA	3 cut(s)	474, 559, 571
BspLI	GGNNCC	2 cut(s)	21, 363
BspMI	ACCTGC	1 cut(s)	187
BspPI	GGATC	1 cut(s)	610
BspT107I	GGYRCC	1 cut(s)	19
BsrI	ACTGG	1 cut(s)	121
BssMI	GATC	1 cut(s)	602
Bst4CI	ACNGT	2 cut(s)	235, 426
BstC8I	GCNNGC	1 cut(s)	410
BstDEI	CTNAG	2 cut(s)	168, 216
BstKTI	GATC	1 cut(s)	605
BstMBI	GATC	1 cut(s)	602
BstMWI	GCNNNNNNNGC	1 cut(s)	418
BstNSI	RCATGY	1 cut(s)	163
BstV1I	GCAGC	1 cut(s)	446
BstX2I	RGATCY	1 cut(s)	602
BstYI	RGATCY	1 cut(s)	602
BsuI	GTATCC	1 cut(s)	181
BsuRI	GGCC	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	58
BveI	ACCTGC	1 cut(s)	187
Cac8I	GCNNGC	1 cut(s)	410
CaiI	CAGNNNCTG	1 cut(s)	424
CciI	TCATGA	3 cut(s)	474, 559, 571
Cfr13I	GGNCC	1 cut(s)	361
Csp6I	GTAC	1 cut(s)	20
CviAII	CATG	4 cut(s)	160, 475, 560, 572
CviJI	RGCY	8 cut(s)	102, 120, 215, 220, 242, 284, 301, 412
CviKI_1	RGCY	8 cut(s)	102, 120, 215, 220, 242, 284, 301, 412
CviQI	GTAC	1 cut(s)	20
DdeI	CTNAG	2 cut(s)	168, 216
DpnI	GATC	1 cut(s)	604
DpnII	GATC	1 cut(s)	602
Eco47I	GGWCC	1 cut(s)	361
EcoO109I	RGGNCCY	1 cut(s)	361
FaeI	CATG	4 cut(s)	163, 478, 563, 575
FatI	CATG	4 cut(s)	159, 474, 559, 571
Fnu4HI	GCNGC	1 cut(s)	435
Fsp4HI	GCNGC	1 cut(s)	435
FspBI	CTAG	2 cut(s)	243, 413
GluI	GCNGC	1 cut(s)	435
HaeIII	GGCC	1 cut(s)	120
Hin1II	CATG	4 cut(s)	163, 478, 563, 575
HinfI	GANTC	3 cut(s)	329, 486, 563
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	6 cut(s)	205, 475, 560, 572, 592, 608
HpyAV	CCTTC	1 cut(s)	76
HpyCH4III	ACNGT	2 cut(s)	235, 426
HpyCH4V	TGCA	5 cut(s)	35, 159, 196, 408, 535
HpyF10VI	GCNNNNNNNGC	1 cut(s)	418
HpyF3I	CTNAG	2 cut(s)	168, 216
Hsp92II	CATG	4 cut(s)	163, 478, 563, 575
KpnI	GGTACC	1 cut(s)	23
Kzo9I	GATC	1 cut(s)	602
LmnI	GCTCC	1 cut(s)	109
LpnPI	CCDG	5 cut(s)	102, 182, 300, 443, 577
Lsp1109I	GCAGC	1 cut(s)	446
LweI	GCATC	1 cut(s)	537
MaeI	CTAG	2 cut(s)	243, 413
MaeIII	GTNAC	3 cut(s)	235, 517, 553
MalI	GATC	1 cut(s)	604
MboI	GATC	1 cut(s)	602
MboII	GAAGA	1 cut(s)	490
MflI	RGATCY	1 cut(s)	602
MluCI	AATT	3 cut(s)	42, 273, 576
MnlI	CCTC	7 cut(s)	4, 56, 118, 274, 376, 579, 592
MroXI	GAANNNNTTC	1 cut(s)	485
MseI	TTAA	2 cut(s)	183, 257
MwoI	GCNNNNNNNGC	1 cut(s)	418
NdeII	GATC	1 cut(s)	602
NlaIII	CATG	4 cut(s)	163, 478, 563, 575
NlaIV	GGNNCC	2 cut(s)	21, 363
NmuCI	GTSAC	2 cut(s)	517, 553
NspI	RCATGY	1 cut(s)	163
PagI	TCATGA	3 cut(s)	474, 559, 571
PdmI	GAANNNNTTC	1 cut(s)	485
PfeI	GAWTC	3 cut(s)	329, 486, 563
PkrI	GCNGC	1 cut(s)	436
PpuMI	RGGWCCY	1 cut(s)	361
Psp5II	RGGWCCY	1 cut(s)	361
PspN4I	GGNNCC	2 cut(s)	21, 363
PspPI	GGNCC	1 cut(s)	361
PspPPI	RGGWCCY	1 cut(s)	361
PstNI	CAGNNNCTG	1 cut(s)	424
PsuI	RGATCY	1 cut(s)	602
RsaI	GTAC	1 cut(s)	21
RsaNI	GTAC	1 cut(s)	20
SaqAI	TTAA	2 cut(s)	183, 257
SatI	GCNGC	1 cut(s)	435
Sau3AI	GATC	1 cut(s)	602
Sau96I	GGNCC	1 cut(s)	361
SetI	ASST	6 cut(s)	25, 129, 201, 244, 414, 448
SfaNI	GCATC	1 cut(s)	537
SinI	GGWCC	1 cut(s)	361
SmlI	CTYRAG	2 cut(s)	122, 606
SmoI	CTYRAG	2 cut(s)	122, 606
Sse9I	AATT	3 cut(s)	42, 273, 576
SsiI	CCGC	1 cut(s)	278
SspMI	CTAG	2 cut(s)	243, 413
TaaI	ACNGT	2 cut(s)	235, 426
TasI	AATT	3 cut(s)	42, 273, 576
TfiI	GAWTC	3 cut(s)	329, 486, 563
Tru1I	TTAA	2 cut(s)	183, 257
Tru9I	TTAA	2 cut(s)	183, 257
TscAI	CASTG	1 cut(s)	58
TseFI	GTSAC	2 cut(s)	517, 553
TseI	GCWGC	1 cut(s)	434
Tsp45I	GTSAC	2 cut(s)	517, 553
TspDTI	ATGAA	2 cut(s)	491, 588
TspGWI	ACGGA	1 cut(s)	327
TspRI	CASTG	1 cut(s)	58
VpaK11BI	GGWCC	1 cut(s)	361
XceI	RCATGY	1 cut(s)	163
XmnI	GAANNNNTTC	1 cut(s)	485
XspI	CTAG	2 cut(s)	243, 413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.