Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001673

Physical Location & Seq

Genomic Coordinates Reverse (-)

1718332 .. 1722812

Gene Structure 4481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00001310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGTTACCCGATGGGAGCTTCATGTGGCAACCGGGGAAGCGAGCAATCATTGATGATGATGTAATTGAGAAGAGTAACCTTAGTAAGCAGATCCTCTTCCGTGATTGGAACATTGGGTGGGCAAAGTCTACGGTTGCCGCTTCTACCGCCGCATCAATAAATCCCCGTCCCCGTCTCGACATTGTAGCGTTGCATAATAGGGTTCGACCCGAAACCGAGAATGTGTTTGATGACACCATCCGGGGGAGTCCAAGTGTTGATCTTAATGCAGTACATAATGTCAATGGCAAGCTCTATGTTGGTCGAGTGTGGGAAAAGCATTTCCAAGTCCGCAAACATGAGCATCATATTGATCCGGCAGATGTCAAGACTGTCATTTCATATGTTCATCAGCAAGAGAGCCGGATCACCGAGGCCGTCATTCAGACCACCGAGGCCAACCTCTCCAGATCCCCACAGCCCGAATCCGATTCGGGCTGTGGGGATCTGGAGACAGTGAATTGTTCAGACCCTAGAGTTCTGATTGCGGTTGAGAGGTTTAATTTGAGGCTGTTTAAGACGATTGTGTTTTTGGAGTATCAGAGGCCGGTTAATGGGTCGAAGGCTGATGAGTGTGATGTGTTGTGGAGGTTTAGGAACAAGAAGGAGAAGTCTTGGAGGAGGTATAGGGATTTTAGGAGGTTTAAGTTTGGGTTTGGAGTGAATTGTACCTATAAGGTGGTGCACGCAGGAGGGTGGCATTCTGGTGTGAATGCACGGCGTTCACAGAGGAGTAGGGTTGGTAAGGGGGTGGTGGAAATGGTAGTAGGATTGCCCCACCGCCTCGTGATGAGGAGATTAATGATACCATACCGAGCTTGGGGGAGAGGAATTTCAGGAGGGGGAAGTACTTGTACTACTCGCGGGGAGGGGATTATTGCAAGGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

309

Amino Acids

35.22

Weight (kDa)

9.87

Isoelectric Point (pI)

45.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ThiF	PF00899	15 - 100	3e-11	ThiF family
DUF7074	PF23269	164 - 248	8.3e-37	Domain of unknown function (DUF7074)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16390
fragaria_vesca	FvH4_3g00440 FvH4_3g00470
malus_domestica	MD00G1221000.v1.1 MD05G1360400.v1.1 MD08G1234300.v1.1 MD10G1337400.v1.1 MD10G1337800.v1.1 MD10G1338000.v1.1
prunus_persica	Prupe.3G138500_v2.0.a1 Prupe.4G005200_v2.0.a1
pyrus_communis	pycom05g32720 pycom10g28680 pycom10g28700 pycom10g28720 pycom10g28750
rosa_chinensis	RchiOBHm_Chr1g0364151 RchiOBHm_Chr2g0155431 RchiOBHm_Chr4g0402181 RchiOBHm_Chr5g0000631 RchiOBHm_Chr6g0271321
rosa_laevigata	RLG00000004254 RLG00000013858 RLG00000028931 RLG00000030883
rosa_multiflora	Rmu_co8004710.1_g000001 Rmu_co8021096.1_g000001 Rmu_co8161794.1_g000001 Rmu_sc0000795.1_g000110 Rmu_sc0001141.1_g000016 Rmu_sc0003662.1_g000007 Rmu_sc0003699.1_g000009 Rmu_sc0006695.1_g000081 Rmu_sc0010255.1_g000007 Rmu_sc0011992.1_g000014 Rmu_sc0016929.1_g000002 Rmu_sc0017523.1_g000008 Rmu_sc0021532.1_g000001 Rmu_sc0029877.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001310 Rroxscaffold_1G00075570 Rroxscaffold_4G00324290
rosa_rugosa	Rorug04G0385500 Rorug07G0309300.1
rosa_samantha	Rh5AG005400 Rh5BG007000 Rh5CG005700 Rh5DG005600
rosa_wichuraiana	Rw5G000530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	128
AccII	CGCG	1 cut(s)	903
AciI	CCGC	7 cut(s)	138, 147, 150, 331, 527, 820, 903
AclWI	GGATC	5 cut(s)	85, 347, 413, 444, 492
AcsI	RAATTY	1 cut(s)	870
AfaI	GTAC	4 cut(s)	273, 709, 889, 895
AfiI	CCNNNNNNNGG	3 cut(s)	243, 593, 859
AluBI	AGCT	3 cut(s)	18, 292, 857
AluI	AGCT	3 cut(s)	18, 292, 857
Alw21I	GWGCWC	1 cut(s)	726
Alw26I	GTCTC	2 cut(s)	179, 485
Alw44I	GTGCAC	1 cut(s)	722
AlwI	GGATC	5 cut(s)	85, 347, 413, 444, 492
AoxI	GGCC	3 cut(s)	414, 435, 584
ApaLI	GTGCAC	1 cut(s)	722
ApoI	RAATTY	1 cut(s)	870
AseI	ATTAAT	1 cut(s)	839
AsuC2I	CCSGG	2 cut(s)	33, 242
AsuHPI	GGTGA	1 cut(s)	400
BaeGI	GKGCMC	1 cut(s)	726
BarI	GAAGNNNNNNTAC	2 cut(s)	877, 909
BauI	CACGAG	1 cut(s)	824
Bbv12I	GWGCWC	1 cut(s)	726
BccI	CCATC	2 cut(s)	5, 245
BceAI	ACGGC	2 cut(s)	401, 773
BcnI	CCSGG	2 cut(s)	33, 242
BcoDI	GTCTC	2 cut(s)	179, 485
BfaI	CTAG	1 cut(s)	513
BisI	GCNGC	2 cut(s)	138, 150
BlsI	GCNGC	2 cut(s)	139, 151
BmcAI	AGTACT	1 cut(s)	889
Bme1390I	CCNGG	2 cut(s)	33, 242
BmrFI	CCNGG	2 cut(s)	33, 242
BmsI	GCATC	2 cut(s)	161, 352
BpmI	CTGGAG	2 cut(s)	430, 509
BpuMI	CCSGG	2 cut(s)	33, 242
BsaJI	CCNNGG	4 cut(s)	32, 241, 411, 432
BsaXI	ACNNNNNCTCC	2 cut(s)	238, 268
Bsc4I	CCNNNNNNNGG	3 cut(s)	243, 593, 859
Bse118I	RCCGGY	1 cut(s)	586
BseDI	CCNNGG	4 cut(s)	32, 241, 411, 432
BseGI	GGATG	1 cut(s)	237
BseLI	CCNNNNNNNGG	3 cut(s)	243, 593, 859
BseRI	GAGGAG	3 cut(s)	673, 784, 847
BseSI	GKGCMC	1 cut(s)	726
Bsh1236I	CGCG	1 cut(s)	903
BshFI	GGCC	3 cut(s)	416, 437, 586
BsiHKAI	GWGCWC	1 cut(s)	726
BsiSI	CCGG	5 cut(s)	32, 241, 356, 403, 587
BslFI	GGGAC	1 cut(s)	153
BslI	CCNNNNNNNGG	3 cut(s)	243, 593, 859
BsmAI	GTCTC	2 cut(s)	179, 485
BsmBI	CGTCTC	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	153
BsmI	GAATGC	2 cut(s)	739, 757
BsnI	GGCC	3 cut(s)	416, 437, 586
Bsp1286I	GDGCHC	1 cut(s)	726
Bsp143I	GATC	6 cut(s)	90, 259, 352, 405, 449, 484
BspACI	CCGC	7 cut(s)	138, 147, 150, 331, 527, 820, 903
BspANI	GGCC	3 cut(s)	416, 437, 586
BspFNI	CGCG	1 cut(s)	903
BspPI	GGATC	5 cut(s)	85, 347, 413, 444, 492
BsrFI	RCCGGY	1 cut(s)	586
BssAI	RCCGGY	1 cut(s)	586
BssECI	CCNNGG	4 cut(s)	32, 241, 411, 432
BssMI	GATC	6 cut(s)	90, 259, 352, 405, 449, 484
BssSI	CACGAG	1 cut(s)	824
Bst2BI	CACGAG	1 cut(s)	824
Bst4CI	ACNGT	3 cut(s)	133, 373, 496
Bst6I	CTCTTC	2 cut(s)	65, 101
BstC8I	GCNNGC	3 cut(s)	42, 290, 726
BstDEI	CTNAG	1 cut(s)	80
BstF5I	GGATG	1 cut(s)	237
BstFNI	CGCG	1 cut(s)	903
BstKTI	GATC	6 cut(s)	93, 262, 355, 408, 452, 487
BstMAI	GTCTC	2 cut(s)	179, 485
BstMBI	GATC	6 cut(s)	90, 259, 352, 405, 449, 484
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstSCI	CCNGG	2 cut(s)	31, 240
BstSLI	GKGCMC	1 cut(s)	726
BstUI	CGCG	1 cut(s)	903
BstX2I	RGATCY	3 cut(s)	90, 449, 484
BstYI	RGATCY	3 cut(s)	90, 449, 484
BsuRI	GGCC	3 cut(s)	416, 437, 586
BtsCI	GGATG	1 cut(s)	237
BtsIMutI	CAGTG	1 cut(s)	501
Cac8I	GCNNGC	3 cut(s)	42, 290, 726
Cfr10I	RCCGGY	1 cut(s)	586
Csp6I	GTAC	4 cut(s)	272, 708, 888, 894
CviAII	CATG	2 cut(s)	22, 338
CviQI	GTAC	4 cut(s)	272, 708, 888, 894
DdeI	CTNAG	1 cut(s)	80
DpnI	GATC	6 cut(s)	92, 261, 354, 407, 451, 486
DpnII	GATC	6 cut(s)	90, 259, 352, 405, 449, 484
Eam1104I	CTCTTC	2 cut(s)	65, 101
EarI	CTCTTC	2 cut(s)	65, 101
Esp3I	CGTCTC	1 cut(s)	179
FaeI	CATG	2 cut(s)	25, 341
FaqI	GGGAC	1 cut(s)	153
FatI	CATG	2 cut(s)	21, 337
FauI	CCCGC	1 cut(s)	896
FauNDI	CATATG	1 cut(s)	382
FblI	GTMKAC	1 cut(s)	128
Fnu4HI	GCNGC	2 cut(s)	138, 150
FokI	GGATG	1 cut(s)	224
Fsp4HI	GCNGC	2 cut(s)	138, 150
FspBI	CTAG	1 cut(s)	513
GluI	GCNGC	2 cut(s)	138, 150
GsuI	CTGGAG	2 cut(s)	430, 509
HaeIII	GGCC	3 cut(s)	416, 437, 586
HapII	CCGG	5 cut(s)	32, 241, 356, 403, 587
Hin1II	CATG	2 cut(s)	25, 341
HinfI	GANTC	3 cut(s)	247, 464, 470
HpaII	CCGG	5 cut(s)	32, 241, 356, 403, 587
HphI	GGTGA	1 cut(s)	400
Hpy166II	GTNNAC	3 cut(s)	129, 724, 764
Hpy188I	TCNGA	5 cut(s)	426, 469, 508, 522, 582
Hpy188III	TCNNGA	6 cut(s)	176, 367, 447, 488, 826, 876
Hpy8I	GTNNAC	3 cut(s)	129, 724, 764
HpyAV	CCTTC	2 cut(s)	595, 637
HpyCH4III	ACNGT	3 cut(s)	133, 373, 496
HpyCH4V	TGCA	5 cut(s)	193, 269, 724, 755, 920
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
HpyF3I	CTNAG	1 cut(s)	80
Hsp92II	CATG	2 cut(s)	25, 341
Kzo9I	GATC	6 cut(s)	90, 259, 352, 405, 449, 484
LmnI	GCTCC	1 cut(s)	15
LweI	GCATC	2 cut(s)	161, 352
MaeI	CTAG	1 cut(s)	513
MaeIII	GTNAC	2 cut(s)	3, 74
MalI	GATC	6 cut(s)	92, 261, 354, 407, 451, 486
MboI	GATC	6 cut(s)	90, 259, 352, 405, 449, 484
MboII	GAAGA	2 cut(s)	82, 88
MflI	RGATCY	3 cut(s)	90, 449, 484
MhlI	GDGCHC	1 cut(s)	726
MluCI	AATT	5 cut(s)	63, 499, 541, 703, 870
MlyI	GAGTC	1 cut(s)	256
MseI	TTAA	6 cut(s)	264, 540, 555, 591, 684, 839
MslI	CAYNNNNRTG	1 cut(s)	744
MspI	CCGG	5 cut(s)	32, 241, 356, 403, 587
MspR9I	CCNGG	2 cut(s)	33, 242
Mva1269I	GAATGC	2 cut(s)	739, 757
MvnI	CGCG	1 cut(s)	903
MwoI	GCNNNNNNNGC	1 cut(s)	146
NciI	CCSGG	2 cut(s)	33, 242
NdeI	CATATG	1 cut(s)	382
NdeII	GATC	6 cut(s)	90, 259, 352, 405, 449, 484
NlaIII	CATG	2 cut(s)	25, 341
PctI	GAATGC	2 cut(s)	739, 757
PfeI	GAWTC	2 cut(s)	464, 470
PkrI	GCNGC	2 cut(s)	139, 151
PleI	GAGTC	1 cut(s)	255
PpsI	GAGTC	1 cut(s)	255
PshBI	ATTAAT	1 cut(s)	839
PsuI	RGATCY	3 cut(s)	90, 449, 484
RsaI	GTAC	4 cut(s)	273, 709, 889, 895
RsaNI	GTAC	4 cut(s)	272, 708, 888, 894
RseI	CAYNNNNRTG	1 cut(s)	744
SaqAI	TTAA	6 cut(s)	264, 540, 555, 591, 684, 839
SatI	GCNGC	2 cut(s)	138, 150
Sau3AI	GATC	6 cut(s)	90, 259, 352, 405, 449, 484
ScaI	AGTACT	1 cut(s)	889
SchI	GAGTC	1 cut(s)	256
ScrFI	CCNGG	2 cut(s)	33, 242
SduI	GDGCHC	1 cut(s)	726
SfaNI	GCATC	2 cut(s)	161, 352
SmiMI	CAYNNNNRTG	1 cut(s)	744
Sse9I	AATT	5 cut(s)	63, 499, 541, 703, 870
SsiI	CCGC	7 cut(s)	138, 147, 150, 331, 527, 820, 903
SspMI	CTAG	1 cut(s)	513
StyD4I	CCNGG	2 cut(s)	31, 240
TaaI	ACNGT	3 cut(s)	133, 373, 496
TaqI	TCGA	4 cut(s)	177, 205, 304, 599
TasI	AATT	5 cut(s)	63, 499, 541, 703, 870
TatI	WGTACW	3 cut(s)	271, 887, 893
TauI	GCSGC	2 cut(s)	140, 152
TfiI	GAWTC	2 cut(s)	464, 470
Tru1I	TTAA	6 cut(s)	264, 540, 555, 591, 684, 839
Tru9I	TTAA	6 cut(s)	264, 540, 555, 591, 684, 839
TscAI	CASTG	1 cut(s)	501
TspDTI	ATGAA	3 cut(s)	10, 369, 377
TspGWI	ACGGA	1 cut(s)	89
TspRI	CASTG	1 cut(s)	501
VneI	GTGCAC	1 cut(s)	722
VspI	ATTAAT	1 cut(s)	839
XapI	RAATTY	1 cut(s)	870
XcmI	CCANNNNNNNNNTGG	1 cut(s)	855
XmiI	GTMKAC	1 cut(s)	128
XspI	CTAG	1 cut(s)	513
ZrmI	AGTACT	1 cut(s)	889

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.