Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8004710.1

Orthogroup ID

OG0001673

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 416

Gene Structure 415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8004710.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 415 bp

atgggagcttcatgtggcaaccaagggaagcgagcaatcattgatgatgatgtaattgagaagagtaaccctagtaagcagatcatcttccgtgattgggacattgggtgggcaaagtctacagttgccgcttctactgctgcatcaataaatccccgtccccgtctcgacattgtagcgttttataatagagttcgacctgaaactgagaatgtgtttgatgacaccatctgggggagtccaagtgttgatcttaatgcagtacataatgtcaatggcaagctttatgttggtcagaggtcctcaaaatttctattaaattggttggtccagcctgagcatgaacaccgcaaatggtttgctgcaatttctgttaggttaatctcaagtggtctacatattactgatcataagc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006464 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030054 GO:0032446 GO:0033554 GO:0036211 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0070647 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 ko05012 map04120 map05012

Pfam Domains

Protein Families

E1_4HB E1_FCCH E1_UFD ThiF UBA_e1_thiolCys

Protein Analysis

138

Amino Acids

15.51

Weight (kDa)

8.82

Isoelectric Point (pI)

37.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16390
fragaria_vesca	FvH4_3g00440 FvH4_3g00470
malus_domestica	MD00G1221000.v1.1 MD05G1360400.v1.1 MD08G1234300.v1.1 MD10G1337400.v1.1 MD10G1337800.v1.1 MD10G1338000.v1.1
prunus_persica	Prupe.3G138500_v2.0.a1 Prupe.4G005200_v2.0.a1
pyrus_communis	pycom05g32720 pycom10g28680 pycom10g28700 pycom10g28720 pycom10g28750
rosa_chinensis	RchiOBHm_Chr1g0364151 RchiOBHm_Chr2g0155431 RchiOBHm_Chr4g0402181 RchiOBHm_Chr5g0000631 RchiOBHm_Chr6g0271321
rosa_laevigata	RLG00000004254 RLG00000013858 RLG00000028931 RLG00000030883
rosa_multiflora	Rmu_co8004710.1_g000001 Rmu_co8021096.1_g000001 Rmu_co8161794.1_g000001 Rmu_sc0000795.1_g000110 Rmu_sc0001141.1_g000016 Rmu_sc0003662.1_g000007 Rmu_sc0003699.1_g000009 Rmu_sc0006695.1_g000081 Rmu_sc0010255.1_g000007 Rmu_sc0011992.1_g000014 Rmu_sc0016929.1_g000002 Rmu_sc0017523.1_g000008 Rmu_sc0021532.1_g000001 Rmu_sc0029877.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001310 Rroxscaffold_1G00075570 Rroxscaffold_4G00324290
rosa_rugosa	Rorug04G0385500 Rorug07G0309300.1
rosa_samantha	Rh5AG005400 Rh5BG007000 Rh5CG005700 Rh5DG005600
rosa_wichuraiana	Rw5G000530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	186
AccI	GTMKAC	2 cut(s)	119, 394
AciI	CCGC	2 cut(s)	129, 349
AcsI	RAATTY	1 cut(s)	308
AfaI	GTAC	1 cut(s)	264
AfiI	CCNNNNNNNGG	2 cut(s)	97, 234
AluBI	AGCT	2 cut(s)	8, 283
AluI	AGCT	2 cut(s)	8, 283
Alw26I	GTCTC	1 cut(s)	170
ApeKI	GCWGC	2 cut(s)	140, 362
ApoI	RAATTY	1 cut(s)	308
AspS9I	GGNCC	2 cut(s)	300, 328
AvaII	GGWCC	2 cut(s)	300, 328
BbvI	GCAGC	2 cut(s)	127, 349
BccI	CCATC	1 cut(s)	236
BclI	TGATCA	1 cut(s)	406
BcoDI	GTCTC	1 cut(s)	170
BfaI	CTAG	1 cut(s)	72
BfmI	CTRYAG	1 cut(s)	120
BisI	GCNGC	3 cut(s)	129, 141, 363
BlsI	GCNGC	3 cut(s)	130, 142, 364
Bme18I	GGWCC	2 cut(s)	300, 328
BmgT120I	GGNCC	2 cut(s)	300, 328
BmsI	GCATC	1 cut(s)	152
Bpu10I	CCTNAGC	1 cut(s)	336
BpuEI	CTTGAG	1 cut(s)	370
BsaJI	CCNNGG	1 cut(s)	22
BsaXI	ACNNNNNCTCC	2 cut(s)	229, 259
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 234
BseDI	CCNNGG	1 cut(s)	22
BseLI	CCNNNNNNNGG	2 cut(s)	97, 234
BseMII	CTCAG	2 cut(s)	198, 327
BseXI	GCAGC	2 cut(s)	127, 349
BslFI	GGGAC	2 cut(s)	113, 144
BslI	CCNNNNNNNGG	2 cut(s)	97, 234
BsmAI	GTCTC	1 cut(s)	170
BsmBI	CGTCTC	1 cut(s)	170
BsmFI	GGGAC	2 cut(s)	113, 144
Bsp143I	GATC	3 cut(s)	81, 250, 406
BspACI	CCGC	2 cut(s)	129, 349
BspCNI	CTCAG	2 cut(s)	199, 328
BssECI	CCNNGG	1 cut(s)	22
BssMI	GATC	3 cut(s)	81, 250, 406
BssT1I	CCWWGG	1 cut(s)	22
Bst4CI	ACNGT	1 cut(s)	124
Bst6I	CTCTTC	1 cut(s)	56
BstC8I	GCNNGC	2 cut(s)	33, 281
BstDEI	CTNAG	2 cut(s)	207, 336
BstKTI	GATC	3 cut(s)	84, 253, 409
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	3 cut(s)	81, 250, 406
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstSFI	CTRYAG	1 cut(s)	120
BstV1I	GCAGC	2 cut(s)	127, 349
Cac8I	GCNNGC	2 cut(s)	33, 281
Cfr13I	GGNCC	2 cut(s)	300, 328
Csp6I	GTAC	1 cut(s)	263
CviAII	CATG	2 cut(s)	12, 341
CviJI	RGCY	3 cut(s)	8, 283, 334
CviKI_1	RGCY	3 cut(s)	8, 283, 334
CviQI	GTAC	1 cut(s)	263
DdeI	CTNAG	2 cut(s)	207, 336
DpnI	GATC	3 cut(s)	83, 252, 408
DpnII	GATC	3 cut(s)	81, 250, 406
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Eco130I	CCWWGG	1 cut(s)	22
Eco47I	GGWCC	2 cut(s)	300, 328
EcoO109I	RGGNCCY	1 cut(s)	300
EcoT14I	CCWWGG	1 cut(s)	22
ErhI	CCWWGG	1 cut(s)	22
Esp3I	CGTCTC	1 cut(s)	170
FaeI	CATG	2 cut(s)	15, 344
FaiI	YATR	7 cut(s)	13, 186, 267, 288, 342, 399, 411
FaqI	GGGAC	2 cut(s)	113, 144
FatI	CATG	2 cut(s)	11, 340
FbaI	TGATCA	1 cut(s)	406
FblI	GTMKAC	2 cut(s)	119, 394
Fnu4HI	GCNGC	3 cut(s)	129, 141, 363
Fsp4HI	GCNGC	3 cut(s)	129, 141, 363
FspBI	CTAG	1 cut(s)	72
GluI	GCNGC	3 cut(s)	129, 141, 363
Hin1II	CATG	2 cut(s)	15, 344
HindIII	AAGCTT	1 cut(s)	281
HinfI	GANTC	1 cut(s)	238
Hpy166II	GTNNAC	2 cut(s)	120, 395
Hpy188I	TCNGA	1 cut(s)	297
Hpy188III	TCNNGA	1 cut(s)	167
Hpy8I	GTNNAC	2 cut(s)	120, 395
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4V	TGCA	3 cut(s)	143, 260, 365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
HpyF3I	CTNAG	2 cut(s)	207, 336
Hsp92II	CATG	2 cut(s)	15, 344
Ksp22I	TGATCA	1 cut(s)	406
Kzo9I	GATC	3 cut(s)	81, 250, 406
LmnI	GCTCC	1 cut(s)	5
LpnPI	CCDG	4 cut(s)	213, 217, 344, 348
Lsp1109I	GCAGC	2 cut(s)	127, 349
LweI	GCATC	1 cut(s)	152
MaeI	CTAG	1 cut(s)	72
MaeIII	GTNAC	1 cut(s)	65
MalI	GATC	3 cut(s)	83, 252, 408
MboI	GATC	3 cut(s)	81, 250, 406
MboII	GAAGA	2 cut(s)	73, 79
MluCI	AATT	4 cut(s)	54, 308, 319, 366
MlyI	GAGTC	1 cut(s)	247
MnlI	CCTC	2 cut(s)	291, 313
MseI	TTAA	3 cut(s)	255, 317, 380
MwoI	GCNNNNNNNGC	1 cut(s)	137
NdeII	GATC	3 cut(s)	81, 250, 406
NlaIII	CATG	2 cut(s)	15, 344
PkrI	GCNGC	3 cut(s)	130, 142, 364
PleI	GAGTC	1 cut(s)	246
PpsI	GAGTC	1 cut(s)	246
PpuMI	RGGWCCY	1 cut(s)	300
PsiI	TTATAA	1 cut(s)	186
Psp5II	RGGWCCY	1 cut(s)	300
PspPI	GGNCC	2 cut(s)	300, 328
PspPPI	RGGWCCY	1 cut(s)	300
RsaI	GTAC	1 cut(s)	264
RsaNI	GTAC	1 cut(s)	263
SaqAI	TTAA	3 cut(s)	255, 317, 380
SatI	GCNGC	3 cut(s)	129, 141, 363
Sau3AI	GATC	3 cut(s)	81, 250, 406
Sau96I	GGNCC	2 cut(s)	300, 328
SchI	GAGTC	1 cut(s)	247
SetI	ASST	5 cut(s)	10, 202, 285, 302, 380
SfaNI	GCATC	1 cut(s)	152
SfcI	CTRYAG	1 cut(s)	120
SinI	GGWCC	2 cut(s)	300, 328
SmlI	CTYRAG	1 cut(s)	385
SmoI	CTYRAG	1 cut(s)	385
Sse9I	AATT	4 cut(s)	54, 308, 319, 366
SsiI	CCGC	2 cut(s)	129, 349
SspMI	CTAG	1 cut(s)	72
StyI	CCWWGG	1 cut(s)	22
TaaI	ACNGT	1 cut(s)	124
TaqI	TCGA	2 cut(s)	168, 196
TasI	AATT	4 cut(s)	54, 308, 319, 366
TatI	WGTACW	1 cut(s)	262
TauI	GCSGC	1 cut(s)	131
Tru1I	TTAA	3 cut(s)	255, 317, 380
Tru9I	TTAA	3 cut(s)	255, 317, 380
TseI	GCWGC	2 cut(s)	140, 362
TspDTI	ATGAA	1 cut(s)	357
TspGWI	ACGGA	1 cut(s)	80
VpaK11BI	GGWCC	2 cut(s)	300, 328
XapI	RAATTY	1 cut(s)	308
XmiI	GTMKAC	2 cut(s)	119, 394
XspI	CTAG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.