Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001673

Physical Location & Seq

Genomic Coordinates Reverse (-)

72277881 .. 72278756

Gene Structure 876 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52431

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGAGCTTGAGGTCAGTGGTGATTCCAGCATCATGTATTAGAGCACCATTAGAGTGTCATCCATTATCAGTTGTTAGAATTGATGAGTGCTTGTCGTCGCTTGATTTTGCTCTGATTGTTGAGAAGAATGAGAATTTTTCAAGTCGTAGGCCTGCCATGAATTCTGTACATTGCTTGGAGACTATAGAGGATGCTAGAGAATTGTTTCTAAAAATGCCTGAGAGGAACATTGTCTCGTGGAAGACTCTGATTAGTACCTTGGTCCTAAATGGTCAGGAGGAAAAGGCGTTGGAAGTTTCTAATGCCATGATTTTGGAGGGAATGGTGCCTACGCATTTTACATTAGCAATTTTGTTCAGTGTGTGTGAAAGGTGGTTGGATGTGGAGAAGGGTAGGAAATGTCATAGCCTTGGAATGGGGGGGTTAAAGCAGATGGACAAAATTGCGGAGGCTTTGGAAATGTTTAAGCTGATGTGTAGGAGAGGAGTGTCTATTTATTCTGCTTCGTCATTTGTTGATATTGAAAAGGACCCCTCATCTGTTGCTCTTACACTTCTGAAAGCAATTATTAAACTCAAGCTAGTTGTTTCGGAGATGTATGATCCTCTTATTAGAGTTGCAGAACTGATGGTAACACGTCAGCAGCGACTGTGGGGTGCAGCAGCTCAAGCTTTGGGGTTGCTGGTTGAAATCAAAGTCATGAAGAAAGGATTCCACAAGCATTTCAATAGTGTATTACAAGTGACTGAAAGCATCTTGCAGTCTGCCATTGATGCTGTCACTCATGGTTCTCTTCATAAAATTGCCATTCCTTTATGGAAATATGTATTTTATTCATCGGTTATGCTAAAAAAAATTTCTGAATCAATTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DRIM

Protein Analysis

291

Amino Acids

32.64

Weight (kDa)

8.62

Isoelectric Point (pI)

53.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	75 - 122	8.4e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16390
fragaria_vesca	FvH4_3g00440 FvH4_3g00470
malus_domestica	MD00G1221000.v1.1 MD05G1360400.v1.1 MD08G1234300.v1.1 MD10G1337400.v1.1 MD10G1337800.v1.1 MD10G1338000.v1.1
prunus_persica	Prupe.3G138500_v2.0.a1 Prupe.4G005200_v2.0.a1
pyrus_communis	pycom05g32720 pycom10g28680 pycom10g28700 pycom10g28720 pycom10g28750
rosa_chinensis	RchiOBHm_Chr1g0364151 RchiOBHm_Chr2g0155431 RchiOBHm_Chr4g0402181 RchiOBHm_Chr5g0000631 RchiOBHm_Chr6g0271321
rosa_laevigata	RLG00000004254 RLG00000013858 RLG00000028931 RLG00000030883
rosa_multiflora	Rmu_co8004710.1_g000001 Rmu_co8021096.1_g000001 Rmu_co8161794.1_g000001 Rmu_sc0000795.1_g000110 Rmu_sc0001141.1_g000016 Rmu_sc0003662.1_g000007 Rmu_sc0003699.1_g000009 Rmu_sc0006695.1_g000081 Rmu_sc0010255.1_g000007 Rmu_sc0011992.1_g000014 Rmu_sc0016929.1_g000002 Rmu_sc0017523.1_g000008 Rmu_sc0021532.1_g000001 Rmu_sc0029877.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001310 Rroxscaffold_1G00075570 Rroxscaffold_4G00324290
rosa_rugosa	Rorug04G0385500 Rorug07G0309300.1
rosa_samantha	Rh5AG005400 Rh5BG007000 Rh5CG005700 Rh5DG005600
rosa_wichuraiana	Rw5G000530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	325
AciI	CCGC	1 cut(s)	446
AclWI	GGATC	1 cut(s)	596
AcsI	RAATTY	3 cut(s)	133, 160, 855
AfaI	GTAC	2 cut(s)	168, 256
AfiI	CCNNNNNNNGG	1 cut(s)	415
AflIII	ACRYGT	1 cut(s)	635
AgsI	TTSAA	4 cut(s)	141, 524, 689, 727
AjiI	CACGTC	1 cut(s)	638
AluBI	AGCT	5 cut(s)	6, 469, 580, 665, 671
AluI	AGCT	5 cut(s)	6, 469, 580, 665, 671
Alw21I	GWGCWC	1 cut(s)	46
Alw26I	GTCTC	2 cut(s)	173, 238
AlwI	GGATC	1 cut(s)	596
AlwNI	CAGNNNCTG	1 cut(s)	649
AoxI	GGCC	1 cut(s)	149
ApeKI	GCWGC	3 cut(s)	643, 659, 662
ApoI	RAATTY	3 cut(s)	133, 160, 855
Asp700I	GAANNNNTTC	3 cut(s)	204, 710, 867
AspS9I	GGNCC	2 cut(s)	262, 529
AsuHPI	GGTGA	1 cut(s)	31
AvaII	GGWCC	2 cut(s)	262, 529
BanI	GGYRCC	1 cut(s)	325
BauI	CACGAG	1 cut(s)	235
BbsI	GAAGAC	1 cut(s)	248
Bbv12I	GWGCWC	1 cut(s)	46
BbvI	GCAGC	3 cut(s)	655, 671, 674
BccI	CCATC	2 cut(s)	427, 622
BcoDI	GTCTC	2 cut(s)	173, 238
BfaI	CTAG	2 cut(s)	195, 581
BfmI	CTRYAG	1 cut(s)	183
BisI	GCNGC	3 cut(s)	644, 660, 663
BlsI	GCNGC	3 cut(s)	645, 661, 664
Bme18I	GGWCC	2 cut(s)	262, 529
BmgBI	CACGTC	1 cut(s)	638
BmgT120I	GGNCC	2 cut(s)	262, 529
BmiI	GGNNCC	2 cut(s)	327, 531
BmsI	GCATC	4 cut(s)	38, 181, 762, 763
BpiI	GAAGAC	1 cut(s)	248
BpuEI	CTTGAG	3 cut(s)	28, 560, 651
BsaJI	CCNNGG	2 cut(s)	258, 409
Bsc4I	CCNNNNNNNGG	1 cut(s)	415
Bse3DI	GCAATG	1 cut(s)	169
BseDI	CCNNGG	2 cut(s)	258, 409
BseGI	GGATG	3 cut(s)	58, 196, 385
BseLI	CCNNNNNNNGG	1 cut(s)	415
BseMI	GCAATG	1 cut(s)	169
BseMII	CTCAG	1 cut(s)	210
BseRI	GAGGAG	1 cut(s)	498
BseXI	GCAGC	3 cut(s)	655, 671, 674
BsgI	GTGCAG	1 cut(s)	678
BshFI	GGCC	1 cut(s)	151
BshNI	GGYRCC	1 cut(s)	325
BsiHKAI	GWGCWC	1 cut(s)	46
BslI	CCNNNNNNNGG	1 cut(s)	415
BsmAI	GTCTC	2 cut(s)	173, 238
BsnI	GGCC	1 cut(s)	151
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp1407I	TGTACA	1 cut(s)	166
Bsp143I	GATC	1 cut(s)	601
BspACI	CCGC	1 cut(s)	446
BspANI	GGCC	1 cut(s)	151
BspCNI	CTCAG	1 cut(s)	211
BspHI	TCATGA	1 cut(s)	699
BspLI	GGNNCC	2 cut(s)	327, 531
BspPI	GGATC	1 cut(s)	596
BspT107I	GGYRCC	1 cut(s)	325
BsrDI	GCAATG	1 cut(s)	169
BsrGI	TGTACA	1 cut(s)	166
BssECI	CCNNGG	2 cut(s)	258, 409
BssMI	GATC	1 cut(s)	601
BssSI	CACGAG	1 cut(s)	235
BssT1I	CCWWGG	2 cut(s)	258, 409
Bst2BI	CACGAG	1 cut(s)	235
Bst4CI	ACNGT	1 cut(s)	651
Bst6I	CTCTTC	1 cut(s)	798
BstAUI	TGTACA	1 cut(s)	166
BstC8I	GCNNGC	1 cut(s)	153
BstDEI	CTNAG	1 cut(s)	219
BstF5I	GGATG	3 cut(s)	58, 196, 385
BstKTI	GATC	1 cut(s)	604
BstMAI	GTCTC	2 cut(s)	173, 238
BstMBI	GATC	1 cut(s)	601
BstMWI	GCNNNNNNNGC	2 cut(s)	668, 773
BstSFI	CTRYAG	1 cut(s)	183
BstV1I	GCAGC	3 cut(s)	655, 671, 674
BstV2I	GAAGAC	1 cut(s)	248
BstXI	CCANNNNNNTGG	1 cut(s)	313
BsuRI	GGCC	1 cut(s)	151
BtrI	CACGTC	1 cut(s)	638
BtsCI	GGATG	3 cut(s)	58, 196, 385
BtsIMutI	CAGTG	2 cut(s)	21, 364
Cac8I	GCNNGC	1 cut(s)	153
CaiI	CAGNNNCTG	1 cut(s)	649
CciI	TCATGA	1 cut(s)	699
Cfr13I	GGNCC	2 cut(s)	262, 529
Csp6I	GTAC	2 cut(s)	167, 255
CviAII	CATG	6 cut(s)	33, 157, 307, 700, 785, 873
CviJI	RGCY	8 cut(s)	6, 151, 408, 452, 469, 580, 665, 671
CviKI_1	RGCY	8 cut(s)	6, 151, 408, 452, 469, 580, 665, 671
CviQI	GTAC	2 cut(s)	167, 255
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	1 cut(s)	603
DpnII	GATC	1 cut(s)	601
Eam1104I	CTCTTC	1 cut(s)	798
EarI	CTCTTC	1 cut(s)	798
Eco130I	CCWWGG	2 cut(s)	258, 409
Eco147I	AGGCCT	1 cut(s)	151
Eco47I	GGWCC	2 cut(s)	262, 529
EcoO109I	RGGNCCY	1 cut(s)	529
EcoRI	GAATTC	1 cut(s)	160
EcoT14I	CCWWGG	2 cut(s)	258, 409
ErhI	CCWWGG	2 cut(s)	258, 409
FaeI	CATG	6 cut(s)	36, 160, 310, 703, 788, 876
FatI	CATG	6 cut(s)	32, 156, 306, 699, 784, 872
Fnu4HI	GCNGC	3 cut(s)	644, 660, 663
FokI	GGATG	3 cut(s)	45, 203, 392
Fsp4HI	GCNGC	3 cut(s)	644, 660, 663
FspBI	CTAG	2 cut(s)	195, 581
GluI	GCNGC	3 cut(s)	644, 660, 663
HaeIII	GGCC	1 cut(s)	151
Hin1II	CATG	6 cut(s)	36, 160, 310, 703, 788, 876
HindIII	AAGCTT	1 cut(s)	669
HinfI	GANTC	4 cut(s)	22, 244, 711, 863
HphI	GGTGA	1 cut(s)	31
Hpy188I	TCNGA	5 cut(s)	114, 249, 558, 592, 862
Hpy188III	TCNNGA	2 cut(s)	275, 700
Hpy99I	CGWCG	1 cut(s)	100
HpyAV	CCTTC	1 cut(s)	382
HpyCH4III	ACNGT	1 cut(s)	651
HpyCH4IV	ACGT	1 cut(s)	637
HpyCH4V	TGCA	3 cut(s)	620, 659, 760
HpyF10VI	GCNNNNNNNGC	2 cut(s)	668, 773
HpyF3I	CTNAG	1 cut(s)	219
HpySE526I	ACGT	1 cut(s)	637
Hsp92II	CATG	6 cut(s)	36, 160, 310, 703, 788, 876
Kzo9I	GATC	1 cut(s)	601
LpnPI	CCDG	5 cut(s)	39, 165, 231, 260, 668
Lsp1109I	GCAGC	3 cut(s)	655, 671, 674
LweI	GCATC	4 cut(s)	38, 181, 762, 763
MaeI	CTAG	2 cut(s)	195, 581
MaeII	ACGT	1 cut(s)	637
MaeIII	GTNAC	3 cut(s)	631, 742, 778
MalI	GATC	1 cut(s)	603
MboI	GATC	1 cut(s)	601
MboII	GAAGA	4 cut(s)	136, 253, 715, 785
MhlI	GDGCHC	1 cut(s)	46
MlyI	GAGTC	1 cut(s)	238
MmeI	TCCRAC	2 cut(s)	270, 357
MnlI	CCTC	9 cut(s)	3, 181, 216, 271, 310, 442, 476, 544, 615
MroXI	GAANNNNTTC	3 cut(s)	204, 710, 867
MseI	TTAA	3 cut(s)	425, 465, 570
MslI	CAYNNNNRTG	1 cut(s)	52
MwoI	GCNNNNNNNGC	2 cut(s)	668, 773
NdeII	GATC	1 cut(s)	601
NlaIII	CATG	6 cut(s)	36, 160, 310, 703, 788, 876
NlaIV	GGNNCC	2 cut(s)	327, 531
NmuCI	GTSAC	2 cut(s)	742, 778
PagI	TCATGA	1 cut(s)	699
PceI	AGGCCT	1 cut(s)	151
PcsI	WCGNNNNNNNCGW	1 cut(s)	643
PdmI	GAANNNNTTC	3 cut(s)	204, 710, 867
PfeI	GAWTC	3 cut(s)	22, 711, 863
PkrI	GCNGC	3 cut(s)	645, 661, 664
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
PpuMI	RGGWCCY	1 cut(s)	529
Psp5II	RGGWCCY	1 cut(s)	529
PspN4I	GGNNCC	2 cut(s)	327, 531
PspPI	GGNCC	2 cut(s)	262, 529
PspPPI	RGGWCCY	1 cut(s)	529
PstNI	CAGNNNCTG	1 cut(s)	649
RsaI	GTAC	2 cut(s)	168, 256
RsaNI	GTAC	2 cut(s)	167, 255
RseI	CAYNNNNRTG	1 cut(s)	52
SaqAI	TTAA	3 cut(s)	425, 465, 570
SatI	GCNGC	3 cut(s)	644, 660, 663
Sau3AI	GATC	1 cut(s)	601
Sau96I	GGNCC	2 cut(s)	262, 529
SchI	GAGTC	1 cut(s)	238
SduI	GDGCHC	1 cut(s)	46
SetI	ASST	9 cut(s)	8, 14, 260, 374, 471, 582, 640, 667, 673
SfaNI	GCATC	4 cut(s)	38, 181, 762, 763
SfcI	CTRYAG	1 cut(s)	183
SinI	GGWCC	2 cut(s)	262, 529
SmiMI	CAYNNNNRTG	1 cut(s)	52
SmlI	CTYRAG	3 cut(s)	7, 575, 666
SmoI	CTYRAG	3 cut(s)	7, 575, 666
SseBI	AGGCCT	1 cut(s)	151
SsiI	CCGC	1 cut(s)	446
SspMI	CTAG	2 cut(s)	195, 581
StuI	AGGCCT	1 cut(s)	151
StyI	CCWWGG	2 cut(s)	258, 409
TaaI	ACNGT	1 cut(s)	651
TaiI	ACGT	1 cut(s)	640
TatI	WGTACW	1 cut(s)	166
TfiI	GAWTC	3 cut(s)	22, 711, 863
Tru1I	TTAA	3 cut(s)	425, 465, 570
Tru9I	TTAA	3 cut(s)	425, 465, 570
TscAI	CASTG	2 cut(s)	21, 364
TseFI	GTSAC	2 cut(s)	742, 778
TseI	GCWGC	3 cut(s)	643, 659, 662
Tsp45I	GTSAC	2 cut(s)	742, 778
TspDTI	ATGAA	4 cut(s)	173, 716, 785, 825
TspRI	CASTG	2 cut(s)	21, 364
VpaK11BI	GGWCC	2 cut(s)	262, 529
XapI	RAATTY	3 cut(s)	133, 160, 855
XmnI	GAANNNNTTC	3 cut(s)	204, 710, 867
XspI	CTAG	2 cut(s)	195, 581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.