Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001673

Physical Location & Seq

Genomic Coordinates Reverse (-)

55657393 .. 55660614

Gene Structure 3222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00324290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGTTTGGTTCTTCCTCTTCTCCACTGCCAATTTCCGATGTTCTGGAGCAAAATGAGGTCCTGCACTCCAGACCCGCTGTCTCCGTTGTGGTGGATGAGCTGGAGAAGCTTCGTCAGCCTCTCTCCGTTGCCTTGACCGAGGAGGTCACCCGTGCCTCACCGTTCTTGGATGAGAACTTTACCGACGTTCAGTTGCTCCAGGAGTTGACCGACGAGGACACTGTGGATGAGAACTACGAGCCCGCTCCAATCCTAGTGGATGCGGTTGTCGACAAGAAAGTACCTGACAGCGCCATTTATCGCCAGTCTCCACCTCAAATTGGAGGAGCATACTGGATGAGCTTGAGGTCAGTGGCGATTCCAGCATCAGGTATTAGAGCACCATTAGAGTGTCATCCATTATCAGTCGTTAGAATTGATGAGTGCTTGTCGTCGCTTGATTTTGTTCTGATTGTTGAGAAGAATGAGAATTTTTCAAGTCGTGAGCCTGCCATGAATTCTGTAAATTGCTTGGAGACTATAAAGGATGCTAGAGAATTGTTTCTAAAAATGCCTGAGAGGAACATTGTCTCGTGGAAAACTCTGATTAGTACTTTGGTCCTAAATGGTCAGGAGGAAAAGGCGTTGGATGTTTATAATGCCATGATTTTGGAGGGAAATGGTGCCTACGCATTTTACATTAGCAATTTTGTTCAGTGTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

BES1_N Glyco_hydro_14

Protein Analysis

234

Amino Acids

26.02

Weight (kDa)

4.4

Isoelectric Point (pI)

56.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16390
fragaria_vesca	FvH4_3g00440 FvH4_3g00470
malus_domestica	MD00G1221000.v1.1 MD05G1360400.v1.1 MD08G1234300.v1.1 MD10G1337400.v1.1 MD10G1337800.v1.1 MD10G1338000.v1.1
prunus_persica	Prupe.3G138500_v2.0.a1 Prupe.4G005200_v2.0.a1
pyrus_communis	pycom05g32720 pycom10g28680 pycom10g28700 pycom10g28720 pycom10g28750
rosa_chinensis	RchiOBHm_Chr1g0364151 RchiOBHm_Chr2g0155431 RchiOBHm_Chr4g0402181 RchiOBHm_Chr5g0000631 RchiOBHm_Chr6g0271321
rosa_laevigata	RLG00000004254 RLG00000013858 RLG00000028931 RLG00000030883
rosa_multiflora	Rmu_co8004710.1_g000001 Rmu_co8021096.1_g000001 Rmu_co8161794.1_g000001 Rmu_sc0000795.1_g000110 Rmu_sc0001141.1_g000016 Rmu_sc0003662.1_g000007 Rmu_sc0003699.1_g000009 Rmu_sc0006695.1_g000081 Rmu_sc0010255.1_g000007 Rmu_sc0011992.1_g000014 Rmu_sc0016929.1_g000002 Rmu_sc0017523.1_g000008 Rmu_sc0021532.1_g000001 Rmu_sc0029877.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001310 Rroxscaffold_1G00075570 Rroxscaffold_4G00324290
rosa_rugosa	Rorug04G0385500 Rorug07G0309300.1
rosa_samantha	Rh5AG005400 Rh5BG007000 Rh5CG005700 Rh5DG005600
rosa_wichuraiana	Rw5G000530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	636
AccB1I	GGYRCC	1 cut(s)	662
AccBSI	CCGCTC	1 cut(s)	245
AccI	GTMKAC	1 cut(s)	270
AciI	CCGC	3 cut(s)	75, 243, 263
AcsI	RAATTY	2 cut(s)	469, 496
AfaI	GTAC	2 cut(s)	282, 592
AfiI	CCNNNNNNNGG	2 cut(s)	320, 368
AgsI	TTSAA	1 cut(s)	477
AhdI	GACNNNNNGTC	1 cut(s)	77
AjnI	CCWGG	1 cut(s)	198
AluBI	AGCT	3 cut(s)	100, 109, 342
AluI	AGCT	3 cut(s)	100, 109, 342
Alw21I	GWGCWC	1 cut(s)	382
Alw26I	GTCTC	4 cut(s)	85, 312, 509, 574
ApoI	RAATTY	2 cut(s)	469, 496
Asp700I	GAANNNNTTC	1 cut(s)	540
AspLEI	GCGC	1 cut(s)	293
AspS9I	GGNCC	2 cut(s)	58, 598
AsuHPI	GGTGA	2 cut(s)	139, 150
AvaII	GGWCC	2 cut(s)	58, 598
BanI	GGYRCC	1 cut(s)	662
BanII	GRGCYC	1 cut(s)	243
BauI	CACGAG	1 cut(s)	571
Bbv12I	GWGCWC	1 cut(s)	382
BciT130I	CCWGG	1 cut(s)	200
BcoDI	GTCTC	4 cut(s)	85, 312, 509, 574
BfaI	CTAG	2 cut(s)	254, 531
BfoI	RGCGCY	1 cut(s)	294
BmcAI	AGTACT	1 cut(s)	592
Bme1390I	CCNGG	1 cut(s)	200
Bme18I	GGWCC	2 cut(s)	58, 598
BmeRI	GACNNNNNGTC	1 cut(s)	77
BmgT120I	GGNCC	2 cut(s)	58, 598
BmiI	GGNNCC	1 cut(s)	664
BmrFI	CCNGG	1 cut(s)	200
BmsI	GCATC	3 cut(s)	250, 374, 517
BpmI	CTGGAG	4 cut(s)	52, 65, 122, 182
BpuEI	CTTGAG	1 cut(s)	364
BsaJI	CCNNGG	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	2 cut(s)	320, 368
Bse1I	ACTGG	2 cut(s)	304, 338
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	8 cut(s)	100, 175, 232, 265, 342, 394, 532, 634
BseLI	CCNNNNNNNGG	2 cut(s)	320, 368
BseMII	CTCAG	1 cut(s)	546
BseNI	ACTGG	2 cut(s)	304, 338
BseRI	GAGGAG	2 cut(s)	155, 339
BsgI	GTGCAG	1 cut(s)	47
BshNI	GGYRCC	1 cut(s)	662
BsiHKAI	GWGCWC	1 cut(s)	382
BslI	CCNNNNNNNGG	2 cut(s)	320, 368
BsmAI	GTCTC	4 cut(s)	85, 312, 509, 574
Bsp1286I	GDGCHC	2 cut(s)	243, 382
BspACI	CCGC	3 cut(s)	75, 243, 263
BspCNI	CTCAG	1 cut(s)	547
BspLI	GGNNCC	1 cut(s)	664
BspT107I	GGYRCC	1 cut(s)	662
BsrBI	CCGCTC	1 cut(s)	245
BsrI	ACTGG	2 cut(s)	304, 338
BssECI	CCNNGG	1 cut(s)	138
BssSI	CACGAG	1 cut(s)	571
Bst2BI	CACGAG	1 cut(s)	571
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	2 cut(s)	162, 223
Bst6I	CTCTTC	1 cut(s)	22
BstC8I	GCNNGC	2 cut(s)	243, 489
BstDEI	CTNAG	1 cut(s)	555
BstEII	GGTNACC	1 cut(s)	145
BstF5I	GGATG	8 cut(s)	100, 175, 232, 265, 342, 394, 532, 634
BstH2I	RGCGCY	1 cut(s)	294
BstHHI	GCGC	1 cut(s)	293
BstMAI	GTCTC	4 cut(s)	85, 312, 509, 574
BstMWI	GCNNNNNNNGC	3 cut(s)	106, 115, 362
BstNI	CCWGG	1 cut(s)	200
BstPI	GGTNACC	1 cut(s)	145
BstSCI	CCNGG	1 cut(s)	198
BstXI	CCANNNNNNTGG	1 cut(s)	649
BtsCI	GGATG	8 cut(s)	100, 175, 232, 265, 342, 394, 532, 634
BtsI	GCAGTG	1 cut(s)	23
BtsIMutI	CAGTG	4 cut(s)	23, 219, 357, 701
Cac8I	GCNNGC	2 cut(s)	243, 489
CfoI	GCGC	1 cut(s)	293
Cfr13I	GGNCC	2 cut(s)	58, 598
Csp6I	GTAC	2 cut(s)	281, 591
CspCI	CAANNNNNGTGG	2 cut(s)	237, 272
CviAII	CATG	2 cut(s)	493, 643
CviJI	RGCY	6 cut(s)	100, 109, 118, 241, 342, 487
CviKI_1	RGCY	6 cut(s)	100, 109, 118, 241, 342, 487
CviQI	GTAC	2 cut(s)	281, 591
DdeI	CTNAG	1 cut(s)	555
DriI	GACNNNNNGTC	1 cut(s)	77
Eam1104I	CTCTTC	1 cut(s)	22
Eam1105I	GACNNNNNGTC	1 cut(s)	77
EarI	CTCTTC	1 cut(s)	22
Eco24I	GRGCYC	1 cut(s)	243
Eco47I	GGWCC	2 cut(s)	58, 598
Eco91I	GGTNACC	1 cut(s)	145
EcoO109I	RGGNCCY	1 cut(s)	58
EcoO65I	GGTNACC	1 cut(s)	145
EcoRI	GAATTC	1 cut(s)	496
EcoRII	CCWGG	1 cut(s)	198
EcoT38I	GRGCYC	1 cut(s)	243
FaeI	CATG	2 cut(s)	496, 646
FaiI	YATR	5 cut(s)	331, 494, 521, 636, 644
FatI	CATG	2 cut(s)	492, 642
FauI	CCCGC	2 cut(s)	82, 250
FblI	GTMKAC	1 cut(s)	270
FokI	GGATG	8 cut(s)	107, 182, 239, 272, 349, 381, 539, 641
FriOI	GRGCYC	1 cut(s)	243
FspBI	CTAG	2 cut(s)	254, 531
GlaI	GCGC	1 cut(s)	292
GsuI	CTGGAG	4 cut(s)	52, 65, 122, 182
HaeII	RGCGCY	1 cut(s)	294
HhaI	GCGC	1 cut(s)	293
Hin1II	CATG	2 cut(s)	496, 646
Hin6I	GCGC	1 cut(s)	291
HinP1I	GCGC	1 cut(s)	291
HincII	GTYRAC	2 cut(s)	207, 271
HindII	GTYRAC	2 cut(s)	207, 271
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	1 cut(s)	358
HphI	GGTGA	2 cut(s)	139, 150
Hpy166II	GTNNAC	2 cut(s)	207, 271
Hpy188I	TCNGA	3 cut(s)	37, 450, 585
Hpy188III	TCNNGA	4 cut(s)	44, 69, 482, 611
Hpy8I	GTNNAC	2 cut(s)	207, 271
Hpy99I	CGWCG	3 cut(s)	188, 215, 436
HpyCH4III	ACNGT	2 cut(s)	162, 223
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	1 cut(s)	64
HpyF10VI	GCNNNNNNNGC	3 cut(s)	106, 115, 362
HpyF3I	CTNAG	1 cut(s)	555
HpySE526I	ACGT	1 cut(s)	186
Hsp92II	CATG	2 cut(s)	496, 646
HspAI	GCGC	1 cut(s)	291
LmnI	GCTCC	4 cut(s)	46, 201, 250, 326
LweI	GCATC	3 cut(s)	250, 374, 517
MaeI	CTAG	2 cut(s)	254, 531
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	1 cut(s)	145
MbiI	CCGCTC	1 cut(s)	245
MboII	GAAGA	3 cut(s)	3, 9, 472
MhlI	GDGCHC	2 cut(s)	243, 382
MluCI	AATT	8 cut(s)	30, 318, 414, 469, 496, 505, 536, 685
MmeI	TCCRAC	1 cut(s)	606
MroXI	GAANNNNTTC	1 cut(s)	540
MslI	CAYNNNNRTG	1 cut(s)	388
MspA1I	CMGCKG	1 cut(s)	77
MspR9I	CCNGG	1 cut(s)	200
MvaI	CCWGG	1 cut(s)	200
MwoI	GCNNNNNNNGC	3 cut(s)	106, 115, 362
NlaIII	CATG	2 cut(s)	496, 646
NlaIV	GGNNCC	1 cut(s)	664
NmuCI	GTSAC	1 cut(s)	145
PdmI	GAANNNNTTC	1 cut(s)	540
PfeI	GAWTC	1 cut(s)	358
PfoI	TCCNGGA	1 cut(s)	198
PpuMI	RGGWCCY	1 cut(s)	58
PsiI	TTATAA	1 cut(s)	636
Psp5II	RGGWCCY	1 cut(s)	58
Psp6I	CCWGG	1 cut(s)	198
PspEI	GGTNACC	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	664
PspPI	GGNCC	2 cut(s)	58, 598
PspPPI	RGGWCCY	1 cut(s)	58
RsaI	GTAC	2 cut(s)	282, 592
RsaNI	GTAC	2 cut(s)	281, 591
RseI	CAYNNNNRTG	1 cut(s)	388
SalI	GTCGAC	1 cut(s)	269
Sau96I	GGNCC	2 cut(s)	58, 598
ScaI	AGTACT	1 cut(s)	592
ScrFI	CCNGG	1 cut(s)	200
SduI	GDGCHC	2 cut(s)	243, 382
SfaNI	GCATC	3 cut(s)	250, 374, 517
SinI	GGWCC	2 cut(s)	58, 598
SmiMI	CAYNNNNRTG	1 cut(s)	388
SmlI	CTYRAG	1 cut(s)	343
SmoI	CTYRAG	1 cut(s)	343
Sse9I	AATT	8 cut(s)	30, 318, 414, 469, 496, 505, 536, 685
SsiI	CCGC	3 cut(s)	75, 243, 263
SspMI	CTAG	2 cut(s)	254, 531
StyD4I	CCNGG	1 cut(s)	198
TaaI	ACNGT	2 cut(s)	162, 223
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	1 cut(s)	270
TaqII	GACCGA	2 cut(s)	152, 224
TasI	AATT	8 cut(s)	30, 318, 414, 469, 496, 505, 536, 685
TatI	WGTACW	1 cut(s)	590
TfiI	GAWTC	1 cut(s)	358
TscAI	CASTG	4 cut(s)	30, 226, 357, 701
TseFI	GTSAC	1 cut(s)	145
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	1 cut(s)	509
TspGWI	ACGGA	2 cut(s)	73, 115
TspRI	CASTG	4 cut(s)	30, 226, 357, 701
VpaK11BI	GGWCC	2 cut(s)	58, 598
XapI	RAATTY	2 cut(s)	469, 496
XmiI	GTMKAC	1 cut(s)	270
XmnI	GAANNNNTTC	1 cut(s)	540
XspI	CTAG	2 cut(s)	254, 531
ZrmI	AGTACT	1 cut(s)	592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.