Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001673

Physical Location & Seq

Genomic Coordinates Forward (+)

372802 .. 375648

Gene Structure 2847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG005600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGGCTTATCATGTATCCTCCACACCCTCTTCGCTCTTCCATAACCGCCACACCCTCTCTCACTCTCTCTCTTCCTCCTCTAGAAAGCTCAGGCCAGCTAACTCTGATATTCACACCTTCAATCTCACCTTCCCTACACTTCACTCCAGAATTTCTCTCCAAATAAACCATGTTTCTTTACAAGAAACCCAGAGTCCAGATGTCCCAAGACTTGAAAACCCTCCAAGCCCAGGTGGAAATTCCGAGTCCTCGTCCAAAAGCTATATCTGGGTCAATCCCAGCAGCCCCAGAGCTTCACAGCTCAGGAAGAAATCCTACGATTCCAGGTATGCTTCTTTAGTCAAAGCAGCTGAGTCCCTGAACTCTACTGGTCTAAGTGAAAGTGATGTTATTGGTATTTTAAAGGGTTTAGGTGACAGGGTTTTGGAACAAGATGCTGTGGTTGTTCTCAATAATATGGTTAATCCCGAAAATGCGTTGCTTGTTCTCAAGTACTTTCAGCAGAGGTTTAAACCAAAGAGGGAAGTGGTTCTCTATAATGTGACCTTGAAAGTTTTTAGGAAGTGTAAGGATTTGGAGAGAGCAGAGAAGCTGTTTTATGAGATACTTGAGAGAGGTGTTAAACCTGATAATGTTACATTTTCGACTATGATTAGCTGTGCTAGGATGTGTTATCTGCCTGATAAGGCTGTGGAGTGGTTTGAGAAGATGCCTACTTTTGGGTGTAATCCCGATGATGTTACCTATTCGGCTATGATTGACGCATATGGGCGTGCCGGTAATGTTGACAAGGCTTTTAGCTTGTATGACCGCGCTAGGACAGAGAAGTGGCGCATTGATCCAGTGACATTTGCAACGTTGATTAAGATTCACGGGCAATCGGGGAATTATGATGGGTGCTTGAATGTTTACGAGGAAATGAAGGCTATTGGGGTGAAGCCGAACATGGTTATTTATAATACTTTGTTGGATGCTATGGGAAGAGCTAAGAGGCCTTGGCAGGCCAAGAAAATTTTCCGAGAGATGATCAGCAAGGGGTCTTCACCAAATTGGGTGACCTATGCATCTCTGCTACGGGCCTTTGGTAGAGCTCGCTATGATGCTCCGTTCCATGAGGCCCCAGACAAGGTTGGCTGGTTTTTGACTACCAAGGTTGCAGTGACGTCATGGTTGGAGTCTAGAAGGTCACCACAAGAGCTTGTAAACATACATGGCTTGCACGTCAAACTGCCTTCCCATGTGGAATGTGATCAAAGCCAGAGCCACACTATAAAACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031425 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

426

Amino Acids

48.25

Weight (kDa)

9.43

Isoelectric Point (pI)

51.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	175 - 220	5.3e-10	PPR repeat family
PPR_2	PF13041	227 - 256	1.6e-06	PPR repeat family
PPR_1	PF12854	241 - 271	2.4e-10	PPR repeat
PPR_2	PF13041	247 - 289	4.2e-07	PPR repeat family
PPR	PF01535	247 - 271	3e-07	PPR repeat
PPR_long	PF17177	253 - 364	4.4e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	278 - 327	6e-08	Pentatricopeptide repeat domain
PPR_3	PF13812	303 - 362	4.8e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	311 - 342	9.1e-07	PPR repeat
PPR_2	PF13041	314 - 362	3.6e-12	PPR repeat family
PPR	PF01535	317 - 346	6.6e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16390
fragaria_vesca	FvH4_3g00440 FvH4_3g00470
malus_domestica	MD00G1221000.v1.1 MD05G1360400.v1.1 MD08G1234300.v1.1 MD10G1337400.v1.1 MD10G1337800.v1.1 MD10G1338000.v1.1
prunus_persica	Prupe.3G138500_v2.0.a1 Prupe.4G005200_v2.0.a1
pyrus_communis	pycom05g32720 pycom10g28680 pycom10g28700 pycom10g28720 pycom10g28750
rosa_chinensis	RchiOBHm_Chr1g0364151 RchiOBHm_Chr2g0155431 RchiOBHm_Chr4g0402181 RchiOBHm_Chr5g0000631 RchiOBHm_Chr6g0271321
rosa_laevigata	RLG00000004254 RLG00000013858 RLG00000028931 RLG00000030883
rosa_multiflora	Rmu_co8004710.1_g000001 Rmu_co8021096.1_g000001 Rmu_co8161794.1_g000001 Rmu_sc0000795.1_g000110 Rmu_sc0001141.1_g000016 Rmu_sc0003662.1_g000007 Rmu_sc0003699.1_g000009 Rmu_sc0006695.1_g000081 Rmu_sc0010255.1_g000007 Rmu_sc0011992.1_g000014 Rmu_sc0016929.1_g000002 Rmu_sc0017523.1_g000008 Rmu_sc0021532.1_g000001 Rmu_sc0029877.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001310 Rroxscaffold_1G00075570 Rroxscaffold_4G00324290
rosa_rugosa	Rorug04G0385500 Rorug07G0309300.1
rosa_samantha	Rh5AG005400 Rh5BG007000 Rh5CG005700 Rh5DG005600
rosa_wichuraiana	Rw5G000530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	957
AatII	GACGTC	1 cut(s)	1166
AccII	CGCG	1 cut(s)	813
AciI	CCGC	2 cut(s)	46, 811
AclI	AACGTT	1 cut(s)	857
AclWI	GGATC	1 cut(s)	833
AcsI	RAATTY	3 cut(s)	150, 238, 1011
AcyI	GRCGYC	1 cut(s)	1163
AfaI	GTAC	1 cut(s)	494
AfiI	CCNNNNNNNGG	3 cut(s)	230, 719, 1126
AgsI	TTSAA	4 cut(s)	121, 215, 550, 904
AjiI	CACGTC	1 cut(s)	1222
AjnI	CCWGG	2 cut(s)	229, 323
AjuI	GAANNNNNNNTTGG	2 cut(s)	998, 1030
Alw21I	GWGCWC	1 cut(s)	1093
AlwI	GGATC	1 cut(s)	833
AoxI	GGCC	5 cut(s)	92, 992, 1002, 1077, 1116
ApeKI	GCWGC	2 cut(s)	282, 347
ApoI	RAATTY	3 cut(s)	150, 238, 1011
Asp700I	GAANNNNTTC	2 cut(s)	528, 1013
AspLEI	GCGC	2 cut(s)	815, 834
AspS9I	GGNCC	2 cut(s)	1077, 1117
AsuHPI	GGTGA	6 cut(s)	118, 425, 946, 1035, 1066, 1179
BanII	GRGCYC	1 cut(s)	1093
BarI	GAAGNNNNNNTAC	2 cut(s)	299, 331
BbsI	GAAGAC	1 cut(s)	1032
Bbv12I	GWGCWC	1 cut(s)	1093
BbvI	GCAGC	2 cut(s)	294, 359
BccI	CCATC	1 cut(s)	887
BciT130I	CCWGG	2 cut(s)	231, 325
BciVI	GTATCC	1 cut(s)	25
BclI	TGATCA	2 cut(s)	1026, 1249
BfaI	CTAG	4 cut(s)	81, 663, 816, 1179
BfuI	GTATCC	1 cut(s)	25
BisI	GCNGC	2 cut(s)	283, 348
BlsI	GCNGC	2 cut(s)	284, 349
BmcAI	AGTACT	1 cut(s)	494
Bme1390I	CCNGG	2 cut(s)	231, 325
BmgBI	CACGTC	1 cut(s)	1222
BmgT120I	GGNCC	2 cut(s)	1077, 1117
BmiI	GGNNCC	1 cut(s)	1119
BmrFI	CCNGG	2 cut(s)	231, 325
BmsI	GCATC	5 cut(s)	424, 699, 961, 1073, 1090
BpiI	GAAGAC	1 cut(s)	1032
BpmI	CTGGAG	1 cut(s)	130
Bpu10I	CCTNAGC	2 cut(s)	89, 302
BpuEI	CTTGAG	2 cut(s)	473, 629
BsaHI	GRCGYC	1 cut(s)	1163
BsaJI	CCNNGG	3 cut(s)	229, 995, 1149
Bsc4I	CCNNNNNNNGG	3 cut(s)	230, 719, 1126
Bse118I	RCCGGY	1 cut(s)	776
Bse1I	ACTGG	2 cut(s)	373, 842
BseBI	CCWGG	2 cut(s)	231, 325
BseDI	CCNNGG	3 cut(s)	229, 995, 1149
BseGI	GGATG	2 cut(s)	672, 976
BseLI	CCNNNNNNNGG	3 cut(s)	230, 719, 1126
BseMII	CTCAG	3 cut(s)	103, 316, 342
BseNI	ACTGG	2 cut(s)	373, 842
BseRI	GAGGAG	1 cut(s)	67
BseXI	GCAGC	2 cut(s)	294, 359
BseYI	CCCAGC	1 cut(s)	278
Bsh1236I	CGCG	1 cut(s)	813
BshFI	GGCC	5 cut(s)	94, 994, 1004, 1079, 1118
BsiHKAI	GWGCWC	1 cut(s)	1093
BsiSI	CCGG	1 cut(s)	777
BslFI	GGGAC	2 cut(s)	188, 340
BslI	CCNNNNNNNGG	3 cut(s)	230, 719, 1126
BsmFI	GGGAC	2 cut(s)	188, 340
BsnI	GGCC	5 cut(s)	94, 994, 1004, 1079, 1118
Bsp1286I	GDGCHC	1 cut(s)	1093
Bsp143I	GATC	3 cut(s)	838, 1026, 1249
BspACI	CCGC	2 cut(s)	46, 811
BspANI	GGCC	5 cut(s)	94, 994, 1004, 1079, 1118
BspCNI	CTCAG	3 cut(s)	102, 315, 343
BspFNI	CGCG	1 cut(s)	813
BspLI	GGNNCC	1 cut(s)	1119
BspPI	GGATC	1 cut(s)	833
BspQI	GCTCTTC	2 cut(s)	41, 976
BsrFI	RCCGGY	1 cut(s)	776
BsrI	ACTGG	2 cut(s)	373, 842
BssAI	RCCGGY	1 cut(s)	776
BssECI	CCNNGG	3 cut(s)	229, 995, 1149
BssMI	GATC	3 cut(s)	838, 1026, 1249
BssNI	GRCGYC	1 cut(s)	1163
BssT1I	CCWWGG	2 cut(s)	995, 1149
Bst2UI	CCWGG	2 cut(s)	231, 325
Bst6I	CTCTTC	4 cut(s)	34, 41, 76, 976
BstACI	GRCGYC	1 cut(s)	1163
BstC8I	GCNNGC	5 cut(s)	96, 774, 1002, 1093, 1217
BstDEI	CTNAG	5 cut(s)	89, 302, 351, 374, 987
BstEII	GGTNACC	2 cut(s)	1054, 1185
BstF5I	GGATG	2 cut(s)	672, 976
BstFNI	CGCG	1 cut(s)	813
BstHHI	GCGC	2 cut(s)	815, 834
BstKTI	GATC	3 cut(s)	841, 1029, 1252
BstMBI	GATC	3 cut(s)	838, 1026, 1249
BstNI	CCWGG	2 cut(s)	231, 325
BstPI	GGTNACC	2 cut(s)	1054, 1185
BstSCI	CCNGG	2 cut(s)	229, 323
BstUI	CGCG	1 cut(s)	813
BstV1I	GCAGC	2 cut(s)	294, 359
BstV2I	GAAGAC	1 cut(s)	1032
BsuI	GTATCC	1 cut(s)	25
BsuRI	GGCC	5 cut(s)	94, 994, 1004, 1079, 1118
BtrI	CACGTC	1 cut(s)	1222
BtsCI	GGATG	2 cut(s)	672, 976
BtsI	GCAGTG	1 cut(s)	1164
BtsIMutI	CAGTG	2 cut(s)	849, 1164
Cac8I	GCNNGC	5 cut(s)	96, 774, 1002, 1093, 1217
CfoI	GCGC	2 cut(s)	815, 834
Cfr10I	RCCGGY	1 cut(s)	776
Cfr13I	GGNCC	2 cut(s)	1077, 1117
CseI	GACGC	1 cut(s)	770
Csp6I	GTAC	1 cut(s)	493
CviAII	CATG	7 cut(s)	11, 170, 946, 1112, 1167, 1211, 1238
CviQI	GTAC	1 cut(s)	493
DdeI	CTNAG	5 cut(s)	89, 302, 351, 374, 987
DpnI	GATC	3 cut(s)	840, 1028, 1251
DpnII	GATC	3 cut(s)	838, 1026, 1249
DraI	TTTAAA	2 cut(s)	402, 511
Eam1104I	CTCTTC	4 cut(s)	34, 41, 76, 976
EarI	CTCTTC	4 cut(s)	34, 41, 76, 976
Ecl136II	GAGCTC	1 cut(s)	1091
Eco130I	CCWWGG	2 cut(s)	995, 1149
Eco147I	AGGCCT	1 cut(s)	994
Eco24I	GRGCYC	1 cut(s)	1093
Eco53kI	GAGCTC	1 cut(s)	1091
Eco91I	GGTNACC	2 cut(s)	1054, 1185
EcoICRI	GAGCTC	1 cut(s)	1091
EcoO109I	RGGNCCY	1 cut(s)	1117
EcoO65I	GGTNACC	2 cut(s)	1054, 1185
EcoRII	CCWGG	2 cut(s)	229, 323
EcoT14I	CCWWGG	2 cut(s)	995, 1149
EcoT22I	ATGCAT	1 cut(s)	1066
EcoT38I	GRGCYC	1 cut(s)	1093
ErhI	CCWWGG	2 cut(s)	995, 1149
FaeI	CATG	7 cut(s)	14, 173, 949, 1115, 1170, 1214, 1241
FaqI	GGGAC	2 cut(s)	188, 340
FatI	CATG	7 cut(s)	10, 169, 945, 1111, 1166, 1210, 1237
FauNDI	CATATG	1 cut(s)	766
FbaI	TGATCA	2 cut(s)	1026, 1249
Fnu4HI	GCNGC	2 cut(s)	283, 348
FokI	GGATG	2 cut(s)	679, 983
FriOI	GRGCYC	1 cut(s)	1093
Fsp4HI	GCNGC	2 cut(s)	283, 348
FspBI	CTAG	4 cut(s)	81, 663, 816, 1179
GlaI	GCGC	2 cut(s)	814, 833
GluI	GCNGC	2 cut(s)	283, 348
GsaI	CCCAGC	1 cut(s)	282
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	5 cut(s)	94, 994, 1004, 1079, 1118
HapII	CCGG	1 cut(s)	777
HgaI	GACGC	1 cut(s)	770
HhaI	GCGC	2 cut(s)	815, 834
Hin1I	GRCGYC	1 cut(s)	1163
Hin1II	CATG	7 cut(s)	14, 173, 949, 1115, 1170, 1214, 1241
Hin6I	GCGC	2 cut(s)	813, 832
HinP1I	GCGC	2 cut(s)	813, 832
HincII	GTYRAC	1 cut(s)	787
HindII	GTYRAC	1 cut(s)	787
HinfI	GANTC	6 cut(s)	193, 245, 320, 353, 868, 1175
HpaII	CCGG	1 cut(s)	777
HphI	GGTGA	6 cut(s)	118, 425, 946, 1035, 1066, 1179
Hpy166II	GTNNAC	3 cut(s)	787, 910, 1204
Hpy188I	TCNGA	3 cut(s)	106, 244, 1019
Hpy188III	TCNNGA	7 cut(s)	81, 147, 197, 304, 467, 731, 1179
Hpy8I	GTNNAC	3 cut(s)	787, 910, 1204
HpyAV	CCTTC	5 cut(s)	127, 139, 916, 1176, 1242
HpyCH4IV	ACGT	3 cut(s)	857, 1163, 1221
HpyCH4V	TGCA	4 cut(s)	854, 1064, 1157, 1219
HpyF3I	CTNAG	5 cut(s)	89, 302, 351, 374, 987
HpySE526I	ACGT	3 cut(s)	857, 1163, 1221
Hsp92I	GRCGYC	1 cut(s)	1163
Hsp92II	CATG	7 cut(s)	14, 173, 949, 1115, 1170, 1214, 1241
HspAI	GCGC	2 cut(s)	813, 832
Ksp22I	TGATCA	2 cut(s)	1026, 1249
Kzo9I	GATC	3 cut(s)	838, 1026, 1249
LguI	GCTCTTC	2 cut(s)	41, 976
LmnI	GCTCC	1 cut(s)	1108
Lsp1109I	GCAGC	2 cut(s)	294, 359
LweI	GCATC	5 cut(s)	424, 699, 961, 1073, 1090
MaeI	CTAG	4 cut(s)	81, 663, 816, 1179
MaeII	ACGT	3 cut(s)	857, 1163, 1221
MaeIII	GTNAC	8 cut(s)	413, 541, 634, 739, 844, 1054, 1159, 1185
MalI	GATC	3 cut(s)	840, 1028, 1251
MboI	GATC	3 cut(s)	838, 1026, 1249
MboII	GAAGA	7 cut(s)	21, 28, 63, 319, 718, 993, 1032
MhlI	GDGCHC	1 cut(s)	1093
MluCI	AATT	5 cut(s)	150, 238, 886, 1011, 1048
MlyI	GAGTC	4 cut(s)	202, 254, 362, 1184
MmeI	TCCRAC	2 cut(s)	948, 1152
Mph1103I	ATGCAT	1 cut(s)	1066
MroXI	GAANNNNTTC	2 cut(s)	528, 1013
MseI	TTAA	5 cut(s)	401, 462, 510, 621, 864
MspA1I	CMGCKG	1 cut(s)	350
MspI	CCGG	1 cut(s)	777
MspR9I	CCNGG	2 cut(s)	231, 325
MssI	GTTTAAAC	1 cut(s)	511
MvaI	CCWGG	2 cut(s)	231, 325
MvnI	CGCG	1 cut(s)	813
NdeI	CATATG	1 cut(s)	766
NdeII	GATC	3 cut(s)	838, 1026, 1249
NlaIII	CATG	7 cut(s)	14, 173, 949, 1115, 1170, 1214, 1241
NlaIV	GGNNCC	1 cut(s)	1119
NmuCI	GTSAC	6 cut(s)	413, 541, 844, 1054, 1159, 1185
NsiI	ATGCAT	1 cut(s)	1066
PceI	AGGCCT	1 cut(s)	994
PciSI	GCTCTTC	2 cut(s)	41, 976
PdmI	GAANNNNTTC	2 cut(s)	528, 1013
PfeI	GAWTC	2 cut(s)	320, 868
PkrI	GCNGC	2 cut(s)	284, 349
PleI	GAGTC	4 cut(s)	201, 253, 361, 1183
PmeI	GTTTAAAC	1 cut(s)	511
PpsI	GAGTC	4 cut(s)	201, 253, 361, 1183
PsiI	TTATAA	1 cut(s)	957
Psp124BI	GAGCTC	1 cut(s)	1093
Psp1406I	AACGTT	1 cut(s)	857
Psp6I	CCWGG	2 cut(s)	229, 323
PspEI	GGTNACC	2 cut(s)	1054, 1185
PspFI	CCCAGC	1 cut(s)	278
PspGI	CCWGG	2 cut(s)	229, 323
PspN4I	GGNNCC	1 cut(s)	1119
PspPI	GGNCC	2 cut(s)	1077, 1117
PvuII	CAGCTG	1 cut(s)	350
RsaI	GTAC	1 cut(s)	494
RsaNI	GTAC	1 cut(s)	493
SacI	GAGCTC	1 cut(s)	1093
SapI	GCTCTTC	2 cut(s)	41, 976
SaqAI	TTAA	5 cut(s)	401, 462, 510, 621, 864
SatI	GCNGC	2 cut(s)	283, 348
Sau3AI	GATC	3 cut(s)	838, 1026, 1249
Sau96I	GGNCC	2 cut(s)	1077, 1117
ScaI	AGTACT	1 cut(s)	494
SchI	GAGTC	4 cut(s)	202, 254, 362, 1184
ScrFI	CCNGG	2 cut(s)	231, 325
SduI	GDGCHC	1 cut(s)	1093
SfaNI	GCATC	5 cut(s)	424, 699, 961, 1073, 1090
SmlI	CTYRAG	2 cut(s)	488, 608
SmoI	CTYRAG	2 cut(s)	488, 608
Sse9I	AATT	5 cut(s)	150, 238, 886, 1011, 1048
SseBI	AGGCCT	1 cut(s)	994
SsiI	CCGC	2 cut(s)	46, 811
SspMI	CTAG	4 cut(s)	81, 663, 816, 1179
SstI	GAGCTC	1 cut(s)	1093
StuI	AGGCCT	1 cut(s)	994
StyD4I	CCNGG	2 cut(s)	229, 323
StyI	CCWWGG	2 cut(s)	995, 1149
TaiI	ACGT	3 cut(s)	860, 1166, 1224
TaqI	TCGA	1 cut(s)	644
TasI	AATT	5 cut(s)	150, 238, 886, 1011, 1048
TatI	WGTACW	1 cut(s)	492
TfiI	GAWTC	2 cut(s)	320, 868
Tru1I	TTAA	5 cut(s)	401, 462, 510, 621, 864
Tru9I	TTAA	5 cut(s)	401, 462, 510, 621, 864
TscAI	CASTG	2 cut(s)	849, 1164
TseFI	GTSAC	6 cut(s)	413, 541, 844, 1054, 1159, 1185
TseI	GCWGC	2 cut(s)	282, 347
Tsp45I	GTSAC	6 cut(s)	413, 541, 844, 1054, 1159, 1185
TspDTI	ATGAA	1 cut(s)	935
TspGWI	ACGGA	1 cut(s)	1095
TspRI	CASTG	2 cut(s)	849, 1164
XapI	RAATTY	3 cut(s)	150, 238, 1011
XbaI	TCTAGA	2 cut(s)	80, 1178
XmnI	GAANNNNTTC	2 cut(s)	528, 1013
XspI	CTAG	4 cut(s)	81, 663, 816, 1179
ZraI	GACGTC	1 cut(s)	1164
ZrmI	AGTACT	1 cut(s)	494
Zsp2I	ATGCAT	1 cut(s)	1066

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.