Rmu_sc0001141.1_g000016

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001141.1
Physical Location & Seq
Forward (+)
42695 .. 43546
852 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001141.1_g000016.1.cds

Sequence Viewer

Length: 852 bp
atgttccaccccaagcagctcatcagtggcaaagaggacaccgccaataacttcgccagaggccattacataattgggaaggagattgtggatcggatccggaagcttgcggacaactgtactgggcttcaagggtttctggtgtcccatgccgtcggaggtgggactggatctgggcttggatctctgctcttggagaggctctttgtggactatgggaagaaagctaagcttggattcactgtttacccatctcctcaggtctcaacctctgttgttgagccttataacagtgttttgtccactcgctcgctctgggagcacactgatgtggttgtgcttctggacaatgaagccatctatgatatctgccgcagattgcttgacattgagcgacctacctacaccaatctcaacaggcttgtttctcaggtcttttcctcactcactgcttctctgctatttgatccagagttaggtgttcaagccccattagaatgtcatccattatcagttgttagaattaatgagtgcttctcttcgcttgattttgttaagattgttgagaagaatgagaagttttcaagtcgtagtcctaccatgaattttgtaaattgcttggagactttagaagatgctaaaaaattgtttcggaaaatgcctgaaaggaacattgtttcatggaatactttgattagtgcgttggtccaaattggtcaggaggaaaaggcaatgcctgtttattatgctttggtttcggagggagtggtgccacctaattcaaatctctacatgattcctcctgatgatttcaaagttgttaatcacagatgtgatttccaaagaatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

283

Amino Acids

31.79

Weight (kDa)

6.32

Isoelectric Point (pI)

45.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 288
AccB1I GGYRCC 1 cut(s) 769
AccIII TCCGGA 1 cut(s) 99
AciI CCGC 3 cut(s) 42, 110, 373
AclWI GGATC 6 cut(s) 91, 99, 104, 178, 190, 461
AcsI RAATTY 2 cut(s) 604, 846
AfaI GTAC 1 cut(s) 121
AfiI CCNNNNNNNGG 1 cut(s) 476
AgsI TTSAA 5 cut(s) 131, 485, 585, 783, 814
AleI CACNNNNGTG 2 cut(s) 329, 831
AluBI AGCT 4 cut(s) 19, 106, 227, 232
AluI AGCT 4 cut(s) 19, 106, 227, 232
Alw21I GWGCWC 1 cut(s) 324
Alw26I GTCTC 2 cut(s) 268, 617
AlwI GGATC 6 cut(s) 91, 99, 104, 178, 190, 461
Aor13HI TCCGGA 1 cut(s) 99
AoxI GGCC 1 cut(s) 61
ApeKI GCWGC 1 cut(s) 16
ApoI RAATTY 2 cut(s) 604, 846
AseI ATTAAT 1 cut(s) 525
AspS9I GGNCC 1 cut(s) 706
AvaII GGWCC 1 cut(s) 706
AxyI CCTNAGG 1 cut(s) 258
BamHI GGATCC 1 cut(s) 96
BanI GGYRCC 1 cut(s) 769
Bbv12I GWGCWC 1 cut(s) 324
BbvI GCAGC 1 cut(s) 28
BccI CCATC 2 cut(s) 259, 365
BceAI ACGGC 1 cut(s) 137
BcoDI GTCTC 2 cut(s) 268, 617
BisI GCNGC 2 cut(s) 17, 373
BlpI GCTNAGC 1 cut(s) 228
BlsI GCNGC 2 cut(s) 18, 374
Bme18I GGWCC 1 cut(s) 706
BmgT120I GGNCC 1 cut(s) 706
BmiI GGNNCC 2 cut(s) 98, 771
BmrI ACTGGG 1 cut(s) 132
BmsI GCATC 1 cut(s) 625
BmuI ACTGGG 1 cut(s) 132
BplI GAGNNNNNCTC 2 cut(s) 521, 553
Bpu1102I GCTNAGC 1 cut(s) 228
BsaI GGTCTC 1 cut(s) 268
BsaWI WCCGGW 1 cut(s) 99
Bsc4I CCNNNNNNNGG 1 cut(s) 476
Bse1I ACTGG 2 cut(s) 127, 172
Bse21I CCTNAGG 1 cut(s) 258
Bse3DI GCAATG 1 cut(s) 738
BseAI TCCGGA 1 cut(s) 99
BseGI GGATG 1 cut(s) 502
BseLI CCNNNNNNNGG 1 cut(s) 476
BseMI GCAATG 1 cut(s) 738
BseMII CTCAG 2 cut(s) 272, 443
BseNI ACTGG 2 cut(s) 127, 172
BseRI GAGGAG 1 cut(s) 246
BseXI GCAGC 1 cut(s) 28
BshFI GGCC 1 cut(s) 63
BshNI GGYRCC 1 cut(s) 769
BsiHKAI GWGCWC 1 cut(s) 324
BsiSI CCGG 1 cut(s) 100
BslFI GGGAC 2 cut(s) 130, 178
BslI CCNNNNNNNGG 1 cut(s) 476
BsmAI GTCTC 2 cut(s) 268, 617
BsmFI GGGAC 2 cut(s) 130, 178
BsnI GGCC 1 cut(s) 63
Bso31I GGTCTC 1 cut(s) 268
Bsp1286I GDGCHC 1 cut(s) 324
Bsp13I TCCGGA 1 cut(s) 99
Bsp143I GATC 5 cut(s) 91, 96, 170, 182, 466
Bsp1720I GCTNAGC 1 cut(s) 228
BspACI CCGC 3 cut(s) 42, 110, 373
BspANI GGCC 1 cut(s) 63
BspCNI CTCAG 2 cut(s) 271, 442
BspEI TCCGGA 1 cut(s) 99
BspLI GGNNCC 2 cut(s) 98, 771
BspPI GGATC 6 cut(s) 91, 99, 104, 178, 190, 461
BspT107I GGYRCC 1 cut(s) 769
BspTNI GGTCTC 1 cut(s) 268
BsrDI GCAATG 1 cut(s) 738
BsrI ACTGG 2 cut(s) 127, 172
BssMI GATC 5 cut(s) 91, 96, 170, 182, 466
Bst4CI ACNGT 3 cut(s) 119, 244, 293
Bst6I CTCTTC 1 cut(s) 544
BstC8I GCNNGC 2 cut(s) 108, 311
BstDEI CTNAG 3 cut(s) 228, 258, 429
BstF5I GGATG 1 cut(s) 502
BstKTI GATC 5 cut(s) 94, 99, 173, 185, 469
BstMAI GTCTC 2 cut(s) 268, 617
BstMBI GATC 5 cut(s) 91, 96, 170, 182, 466
BstMWI GCNNNNNNNGC 1 cut(s) 319
BstV1I GCAGC 1 cut(s) 28
BstX2I RGATCY 3 cut(s) 96, 170, 182
BstYI RGATCY 3 cut(s) 96, 170, 182
Bsu36I CCTNAGG 1 cut(s) 258
BsuRI GGCC 1 cut(s) 63
BtsCI GGATG 1 cut(s) 502
BtsI GCAGTG 1 cut(s) 447
BtsIMutI CAGTG 5 cut(s) 31, 240, 298, 324, 447
Cac8I GCNNGC 2 cut(s) 108, 311
Cfr13I GGNCC 1 cut(s) 706
Csp6I GTAC 1 cut(s) 120
CviAII CATG 4 cut(s) 149, 601, 681, 793
CviQI GTAC 1 cut(s) 120
DdeI CTNAG 3 cut(s) 228, 258, 429
DpnI GATC 5 cut(s) 93, 98, 172, 184, 468
DpnII GATC 5 cut(s) 91, 96, 170, 182, 466
Eam1104I CTCTTC 1 cut(s) 544
EarI CTCTTC 1 cut(s) 544
Eco31I GGTCTC 1 cut(s) 268
Eco32I GATATC 1 cut(s) 367
Eco47I GGWCC 1 cut(s) 706
Eco81I CCTNAGG 1 cut(s) 258
EcoRV GATATC 1 cut(s) 367
FaeI CATG 4 cut(s) 152, 604, 684, 796
FaiI YATR 9 cut(s) 71, 150, 216, 288, 363, 602, 682, 747, 794
FalI AAGNNNNNCTT 2 cut(s) 216, 248
FaqI GGGAC 2 cut(s) 130, 178
FatI CATG 4 cut(s) 148, 600, 680, 792
Fnu4HI GCNGC 2 cut(s) 17, 373
FokI GGATG 1 cut(s) 489
Fsp4HI GCNGC 2 cut(s) 17, 373
GluI GCNGC 2 cut(s) 17, 373
HaeIII GGCC 1 cut(s) 63
HapII CCGG 1 cut(s) 100
Hin1II CATG 4 cut(s) 152, 604, 684, 796
HindIII AAGCTT 2 cut(s) 104, 230
HinfI GANTC 2 cut(s) 237, 796
HpaII CCGG 1 cut(s) 100
Hpy166II GTNNAC 3 cut(s) 211, 247, 303
Hpy188I TCNGA 4 cut(s) 96, 158, 654, 760
Hpy188III TCNNGA 5 cut(s) 100, 344, 470, 719, 803
Hpy8I GTNNAC 3 cut(s) 211, 247, 303
Hpy99I CGWCG 1 cut(s) 158
HpyAV CCTTC 1 cut(s) 73
HpyCH4III ACNGT 3 cut(s) 119, 244, 293
HpyF10VI GCNNNNNNNGC 1 cut(s) 319
HpyF3I CTNAG 3 cut(s) 228, 258, 429
Hsp92II CATG 4 cut(s) 152, 604, 684, 796
Kpn2I TCCGGA 1 cut(s) 99
Kzo9I GATC 5 cut(s) 91, 96, 170, 182, 466
LmnI GCTCC 1 cut(s) 319
Lsp1109I GCAGC 1 cut(s) 28
LweI GCATC 1 cut(s) 625
MalI GATC 5 cut(s) 93, 98, 172, 184, 468
MboI GATC 5 cut(s) 91, 96, 170, 182, 466
MboII GAAGA 4 cut(s) 232, 531, 580, 644
MflI RGATCY 3 cut(s) 96, 170, 182
MhlI GDGCHC 1 cut(s) 324
MluCI AATT 8 cut(s) 72, 522, 604, 613, 644, 711, 778, 846
MmeI TCCRAC 1 cut(s) 136
MroI TCCGGA 1 cut(s) 99
MseI TTAA 3 cut(s) 525, 555, 822
MslI CAYNNNNRTG 4 cut(s) 327, 329, 496, 831
MspI CCGG 1 cut(s) 100
MwoI GCNNNNNNNGC 1 cut(s) 319
NdeII GATC 5 cut(s) 91, 96, 170, 182, 466
NlaIII CATG 4 cut(s) 152, 604, 684, 796
NlaIV GGNNCC 2 cut(s) 98, 771
OliI CACNNNNGTG 2 cut(s) 329, 831
PfeI GAWTC 2 cut(s) 237, 796
PkrI GCNGC 2 cut(s) 18, 374
PshBI ATTAAT 1 cut(s) 525
PsiI TTATAA 1 cut(s) 288
PspN4I GGNNCC 2 cut(s) 98, 771
PspPI GGNCC 1 cut(s) 706
PsuI RGATCY 3 cut(s) 96, 170, 182
RsaI GTAC 1 cut(s) 121
RsaNI GTAC 1 cut(s) 120
RseI CAYNNNNRTG 4 cut(s) 327, 329, 496, 831
SaqAI TTAA 3 cut(s) 525, 555, 822
SatI GCNGC 2 cut(s) 17, 373
Sau3AI GATC 5 cut(s) 91, 96, 170, 182, 466
Sau96I GGNCC 1 cut(s) 706
SduI GDGCHC 1 cut(s) 324
SfaNI GCATC 1 cut(s) 625
SinI GGWCC 1 cut(s) 706
SmiMI CAYNNNNRTG 4 cut(s) 327, 329, 496, 831
Sse9I AATT 8 cut(s) 72, 522, 604, 613, 644, 711, 778, 846
SsiI CCGC 3 cut(s) 42, 110, 373
TaaI ACNGT 3 cut(s) 119, 244, 293
TasI AATT 8 cut(s) 72, 522, 604, 613, 644, 711, 778, 846
TatI WGTACW 1 cut(s) 119
TauI GCSGC 1 cut(s) 375
TfiI GAWTC 2 cut(s) 237, 796
Tru1I TTAA 3 cut(s) 525, 555, 822
Tru9I TTAA 3 cut(s) 525, 555, 822
TscAI CASTG 5 cut(s) 31, 247, 298, 331, 454
TseI GCWGC 1 cut(s) 16
TspDTI ATGAA 3 cut(s) 366, 617, 669
TspRI CASTG 5 cut(s) 31, 247, 298, 331, 454
VpaK11BI GGWCC 1 cut(s) 706
VspI ATTAAT 1 cut(s) 525
XapI RAATTY 2 cut(s) 604, 846
XcmI CCANNNNNNNNNTGG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.