Rmu_sc0021532.1_g000001

Pentatricopeptide repeat-containing protein At4g16390

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021532.1
Physical Location & Seq
Reverse (-)
525 .. 2132
1608 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021532.1_g000001.1.cds

Sequence Viewer

Length: 1608 bp
ctgaatccgtttccatcattcggagtcggatcctccagcgccccaaccaccaccaccgcagcttctccaccttcactcgactctaccctgtctcagtccctgacctcgggttctaactcatccccattcggtccaccagtctctgcagccatttcaggcactactagctcttcgtcttctcagccaccaatttctgatgttccggagcaaaatgaggttccccattccaagctggccgtctccaccctcatggacgagctccagaagcctcgccagtccctctctgtcgccatcgccgaagaggtcaacctcgccgttcaagtcgaccactcttcatctggccggaatagcgatgcgaaactcaaaagcgacaacgtcatcccctccaacggcgtcgacctcacagtcttggatgcgaacttgaccgccgttcagttgctccaggacttgacagacgagtacactgtggatgagaacgacgaacctcctctaatcctagtgaatgggtttgttgacgacaaccagcctggcggcaccacttatctccagtgtccacctcaggtgagcttgagttcagtggagattccagtgtcaagtattaacgcattagagtgtcatccattatcagttgttagaattgatgagtgcttgccttggcttgattttgttctgattgttgagaagaattttgttctgatggttgagaagaatgagaatttttcaagtcgtagtcctgccatgaattctgtaaattgcttggagactatagaggatgctggagaattgtttctaataatgcctgagaggaacattgtctcatggaaaactctgattagtgctttggtcctaaatggtcaggaggagaaggcattgggtgtttatgataccatgattttggagggaatggtgcctacgcatttttcattagcaactttgttcagtgcgtgtgaagggtggttggatgtggagaaaggaatagagttaaatgttattctatataacactcttttgcttctaggtgctgacattggctacactgatcaagctattaagattttcgaagacgtgaagagttctgaaacttggaagcccgatagttggacattttcatccatgatgaccatatattcctgtagtgggaaagtctcggaggcaaggagaacgttgaatgagatgatggaagctggtttccagcttaatatccttattttgatatcactaatacaattctatgggaaggccaagcgtactgatgatgttgtcgaggcattcaatcaactacaacaattgggcataactccagatgagcatttctgtggttatctcctgaatgtgatgactcaaacaccaaagggtgaactacctgagttgaatgattgcattaagcgtggtaatgagaagcttggatatgttgtaagacctctggtagggaagcaagacagtagtcaaaacttcaggaaggaagcatcagaactttttaattcagttggttccaatatgaaggcctactacaattgctttattagtcttcgtgtgaacctccagcccttgaagagagcttgtgcatttctaaaccctccgcatgagcgggagactacgtccacttga

Protein Analysis

535

Amino Acids

58.47

Weight (kDa)

4.53

Isoelectric Point (pI)

47.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 404
AccB1I GGYRCC 2 cut(s) 533, 907
AccBSI CCGCTC 1 cut(s) 1588
AccI GTMKAC 2 cut(s) 324, 396
AccIII TCCGGA 1 cut(s) 202
AciI CCGC 5 cut(s) 57, 426, 531, 1580, 1588
AclI AACGTT 1 cut(s) 1163
AclWI GGATC 2 cut(s) 24, 37
AcoI YGGCCR 2 cut(s) 234, 340
AcsI RAATTY 3 cut(s) 685, 715, 742
AcuI CTGAAG 1 cut(s) 1438
AcyI GRCGYC 1 cut(s) 393
AfaI GTAC 2 cut(s) 461, 1249
AfiI CCNNNNNNNGG 6 cut(s) 20, 106, 389, 1098, 1137, 1427
AgsI TTSAA 6 cut(s) 320, 723, 1168, 1273, 1372, 1552
AjiI CACGTC 1 cut(s) 1066
AjnI CCWGG 2 cut(s) 441, 526
Alw21I GWGCWC 1 cut(s) 261
Alw26I GTCTC 7 cut(s) 96, 145, 244, 755, 820, 1150, 1586
AlwI GGATC 2 cut(s) 24, 37
AlwNI CAGNNNCTG 2 cut(s) 100, 143
Ama87I CYCGRG 1 cut(s) 106
Aor13HI TCCGGA 1 cut(s) 202
AoxI GGCC 4 cut(s) 234, 340, 1239, 1503
ApeKI GCWGC 2 cut(s) 59, 146
ApoI RAATTY 3 cut(s) 685, 715, 742
Asp700I GAANNNNTTC 1 cut(s) 786
AspLEI GCGC 1 cut(s) 41
AspS9I GGNCC 2 cut(s) 131, 844
AsuHPI GGTGA 2 cut(s) 574, 1367
AsuII TTCGAA 1 cut(s) 1059
AvaI CYCGRG 1 cut(s) 106
AvaII GGWCC 2 cut(s) 131, 844
AxyI CCTNAGG 1 cut(s) 558
BamHI GGATCC 1 cut(s) 29
BanI GGYRCC 2 cut(s) 533, 907
BanII GRGCYC 1 cut(s) 261
BarI GAAGNNNNNNTAC 2 cut(s) 1493, 1525
BbsI GAAGAC 3 cut(s) 168, 1068, 1520
Bbv12I GWGCWC 1 cut(s) 261
BbvI GCAGC 2 cut(s) 71, 158
BccI CCATC 4 cut(s) 22, 299, 691, 1171
BceAI ACGGC 4 cut(s) 221, 299, 406, 413
BciT130I CCWGG 2 cut(s) 443, 528
BclI TGATCA 1 cut(s) 1039
BcoDI GTCTC 7 cut(s) 96, 145, 244, 755, 820, 1150, 1586
BfaI CTAG 3 cut(s) 165, 497, 1016
BfmI CTRYAG 3 cut(s) 144, 765, 1132
BfoI RGCGCY 1 cut(s) 42
BisI GCNGC 3 cut(s) 60, 147, 532
BlsI GCNGC 3 cut(s) 61, 148, 533
Bme1390I CCNGG 2 cut(s) 443, 528
Bme18I GGWCC 2 cut(s) 131, 844
BmeT110I CYCGRG 1 cut(s) 106
BmgBI CACGTC 1 cut(s) 1066
BmgT120I GGNCC 2 cut(s) 131, 844
BmiI GGNNCC 5 cut(s) 31, 219, 535, 909, 1492
BmrFI CCNGG 2 cut(s) 443, 528
BmsI GCATC 4 cut(s) 343, 403, 763, 1475
BoxI GACNNNNGTC 1 cut(s) 1443
BpiI GAAGAC 3 cut(s) 168, 1068, 1520
BpmI CTGGAG 7 cut(s) 19, 245, 425, 530, 798, 1284, 1526
Bpu14I TTCGAA 1 cut(s) 1059
BpuEI CTTGAG 1 cut(s) 589
BsaHI GRCGYC 1 cut(s) 393
BsaJI CCNNGG 2 cut(s) 105, 653
BsaWI WCCGGW 1 cut(s) 202
BsaXI ACNNNNNCTCC 1 cut(s) 1583
Bsc4I CCNNNNNNNGG 6 cut(s) 20, 106, 389, 1098, 1137, 1427
Bse1I ACTGG 4 cut(s) 137, 274, 547, 587
Bse21I CCTNAGG 1 cut(s) 558
BseAI TCCGGA 1 cut(s) 202
BseBI CCWGG 2 cut(s) 443, 528
BseDI CCNNGG 2 cut(s) 105, 653
BseGI GGATG 8 cut(s) 119, 378, 418, 475, 616, 778, 967, 1109
BseLI CCNNNNNNNGG 6 cut(s) 20, 106, 389, 1098, 1137, 1427
BseMII CTCAG 5 cut(s) 107, 194, 572, 792, 1356
BseNI ACTGG 4 cut(s) 137, 274, 547, 587
BseRI GAGGAG 2 cut(s) 477, 875
BseXI GCAGC 2 cut(s) 71, 158
BshFI GGCC 4 cut(s) 236, 342, 1241, 1505
BshNI GGYRCC 2 cut(s) 533, 907
BsiHKAI GWGCWC 1 cut(s) 261
BsiHKCI CYCGRG 1 cut(s) 106
BsiSI CCGG 2 cut(s) 203, 343
BslFI GGGAC 2 cut(s) 82, 262
BslI CCNNNNNNNGG 6 cut(s) 20, 106, 389, 1098, 1137, 1427
BsmAI GTCTC 7 cut(s) 96, 145, 244, 755, 820, 1150, 1586
BsmBI CGTCTC 1 cut(s) 244
BsmFI GGGAC 2 cut(s) 82, 262
BsmI GAATGC 1 cut(s) 1268
BsnI GGCC 4 cut(s) 236, 342, 1241, 1505
BsoBI CYCGRG 1 cut(s) 106
Bsp119I TTCGAA 1 cut(s) 1059
Bsp1286I GDGCHC 1 cut(s) 261
Bsp13I TCCGGA 1 cut(s) 202
Bsp143I GATC 2 cut(s) 29, 1039
BspACI CCGC 5 cut(s) 57, 426, 531, 1580, 1588
BspANI GGCC 4 cut(s) 236, 342, 1241, 1505
BspCNI CTCAG 5 cut(s) 106, 193, 571, 793, 1357
BspEI TCCGGA 1 cut(s) 202
BspLI GGNNCC 5 cut(s) 31, 219, 535, 909, 1492
BspMAI CTGCAG 1 cut(s) 148
BspPI GGATC 2 cut(s) 24, 37
BspQI GCTCTTC 1 cut(s) 175
BspT104I TTCGAA 1 cut(s) 1059
BspT107I GGYRCC 2 cut(s) 533, 907
BsrBI CCGCTC 1 cut(s) 1588
BsrI ACTGG 4 cut(s) 137, 274, 547, 587
BssECI CCNNGG 2 cut(s) 105, 653
BssMI GATC 2 cut(s) 29, 1039
BssNI GRCGYC 1 cut(s) 393
BssT1I CCWWGG 1 cut(s) 653
Bst2UI CCWGG 2 cut(s) 443, 528
Bst4CI ACNGT 3 cut(s) 406, 466, 1442
Bst6I CTCTTC 5 cut(s) 175, 294, 337, 1064, 1547
BstACI GRCGYC 1 cut(s) 393
BstBI TTCGAA 1 cut(s) 1059
BstC8I GCNNGC 2 cut(s) 234, 650
BstDEI CTNAG 5 cut(s) 93, 180, 558, 801, 1365
BstENI CCTNNNNNAGG 1 cut(s) 1425
BstF5I GGATG 8 cut(s) 119, 378, 418, 475, 616, 778, 967, 1109
BstH2I RGCGCY 1 cut(s) 42
BstHHI GCGC 1 cut(s) 41
BstKTI GATC 2 cut(s) 32, 1042
BstMAI GTCTC 7 cut(s) 96, 145, 244, 755, 820, 1150, 1586
BstMBI GATC 2 cut(s) 29, 1039
BstMWI GCNNNNNNNGC 3 cut(s) 165, 265, 348
BstNI CCWGG 2 cut(s) 443, 528
BstPAI GACNNNNGTC 1 cut(s) 1443
BstSCI CCNGG 2 cut(s) 441, 526
BstSFI CTRYAG 3 cut(s) 144, 765, 1132
BstV1I GCAGC 2 cut(s) 71, 158
BstV2I GAAGAC 3 cut(s) 168, 1068, 1520
BstX2I RGATCY 1 cut(s) 29
BstXI CCANNNNNNTGG 2 cut(s) 250, 895
BstYI RGATCY 1 cut(s) 29
Bsu36I CCTNAGG 1 cut(s) 558
BsuRI GGCC 4 cut(s) 236, 342, 1241, 1505
BtgZI GCGATG 2 cut(s) 277, 366
BtrI CACGTC 1 cut(s) 1066
BtsCI GGATG 8 cut(s) 119, 378, 418, 475, 616, 778, 967, 1109
BtsIMutI CAGTG 6 cut(s) 462, 554, 582, 594, 946, 1035
Cac8I GCNNGC 2 cut(s) 234, 650
CaiI CAGNNNCTG 2 cut(s) 100, 143
CfoI GCGC 1 cut(s) 41
Cfr13I GGNCC 2 cut(s) 131, 844
CseI GACGC 1 cut(s) 382
Csp6I GTAC 2 cut(s) 460, 1248
CviAII CATG 6 cut(s) 250, 739, 819, 889, 1114, 1583
CviQI GTAC 2 cut(s) 460, 1248
DdeI CTNAG 5 cut(s) 93, 180, 558, 801, 1365
DpnI GATC 2 cut(s) 31, 1041
DpnII GATC 2 cut(s) 29, 1039
DrdI GACNNNNNNGTC 1 cut(s) 404
DseDI GACNNNNNNGTC 1 cut(s) 404
EaeI YGGCCR 2 cut(s) 234, 340
Eam1104I CTCTTC 5 cut(s) 175, 294, 337, 1064, 1547
EarI CTCTTC 5 cut(s) 175, 294, 337, 1064, 1547
Ecl136II GAGCTC 1 cut(s) 259
Eco130I CCWWGG 1 cut(s) 653
Eco147I AGGCCT 1 cut(s) 1505
Eco24I GRGCYC 1 cut(s) 261
Eco32I GATATC 1 cut(s) 1215
Eco47I GGWCC 2 cut(s) 131, 844
Eco53kI GAGCTC 1 cut(s) 259
Eco57I CTGAAG 1 cut(s) 1438
Eco81I CCTNAGG 1 cut(s) 558
Eco88I CYCGRG 1 cut(s) 106
EcoICRI GAGCTC 1 cut(s) 259
EcoNI CCTNNNNNAGG 1 cut(s) 1425
EcoRI GAATTC 1 cut(s) 742
EcoRII CCWGG 2 cut(s) 441, 526
EcoRV GATATC 1 cut(s) 1215
EcoT14I CCWWGG 1 cut(s) 653
EcoT38I GRGCYC 1 cut(s) 261
ErhI CCWWGG 1 cut(s) 653
Esp3I CGTCTC 1 cut(s) 244
FaeI CATG 6 cut(s) 253, 742, 822, 892, 1117, 1586
FaqI GGGAC 2 cut(s) 82, 262
FatI CATG 6 cut(s) 249, 738, 818, 888, 1113, 1582
FauI CCCGC 1 cut(s) 1581
FbaI TGATCA 1 cut(s) 1039
FblI GTMKAC 2 cut(s) 324, 396
Fnu4HI GCNGC 3 cut(s) 60, 147, 532
FokI GGATG 8 cut(s) 106, 365, 425, 482, 603, 785, 974, 1096
FriOI GRGCYC 1 cut(s) 261
Fsp4HI GCNGC 3 cut(s) 60, 147, 532
FspBI CTAG 3 cut(s) 165, 497, 1016
GlaI GCGC 1 cut(s) 40
GluI GCNGC 3 cut(s) 60, 147, 532
GsuI CTGGAG 7 cut(s) 19, 245, 425, 530, 798, 1284, 1526
HaeII RGCGCY 1 cut(s) 42
HaeIII GGCC 4 cut(s) 236, 342, 1241, 1505
HapII CCGG 2 cut(s) 203, 343
HgaI GACGC 1 cut(s) 382
HhaI GCGC 1 cut(s) 41
Hin1I GRCGYC 1 cut(s) 393
Hin1II CATG 6 cut(s) 253, 742, 822, 892, 1117, 1586
Hin6I GCGC 1 cut(s) 39
HinP1I GCGC 1 cut(s) 39
HincII GTYRAC 4 cut(s) 307, 325, 397, 514
HindII GTYRAC 4 cut(s) 307, 325, 397, 514
HindIII AAGCTT 1 cut(s) 1400
HinfI GANTC 5 cut(s) 4, 24, 80, 583, 1339
HpaII CCGG 2 cut(s) 203, 343
HphI GGTGA 2 cut(s) 574, 1367
Hpy188I TCNGA 9 cut(s) 23, 29, 196, 672, 696, 831, 1078, 1150, 1471
Hpy188III TCNNGA 6 cut(s) 203, 262, 857, 1301, 1327, 1456
Hpy99I CGWCG 2 cut(s) 398, 482
HpyAV CCTTC 6 cut(s) 81, 859, 944, 1231, 1453, 1495
HpyCH4III ACNGT 3 cut(s) 406, 466, 1442
HpyCH4IV ACGT 4 cut(s) 375, 1065, 1163, 1598
HpyCH4V TGCA 3 cut(s) 146, 1380, 1565
HpyF10VI GCNNNNNNNGC 3 cut(s) 165, 265, 348
HpyF3I CTNAG 5 cut(s) 93, 180, 558, 801, 1365
HpySE526I ACGT 4 cut(s) 375, 1065, 1163, 1598
Hsp92I GRCGYC 1 cut(s) 393
Hsp92II CATG 6 cut(s) 253, 742, 822, 892, 1117, 1586
HspAI GCGC 1 cut(s) 39
Kpn2I TCCGGA 1 cut(s) 202
Ksp22I TGATCA 1 cut(s) 1039
Kzo9I GATC 2 cut(s) 29, 1039
LguI GCTCTTC 1 cut(s) 175
LmnI GCTCC 3 cut(s) 205, 264, 444
Lsp1109I GCAGC 2 cut(s) 71, 158
LweI GCATC 4 cut(s) 343, 403, 763, 1475
MaeI CTAG 3 cut(s) 165, 497, 1016
MaeII ACGT 4 cut(s) 375, 1065, 1163, 1598
MalI GATC 2 cut(s) 31, 1041
MbiI CCGCTC 1 cut(s) 1588
MboI GATC 2 cut(s) 29, 1039
MfeI CAATTG 2 cut(s) 1286, 1513
MflI RGATCY 1 cut(s) 29
MhlI GDGCHC 1 cut(s) 261
MlyI GAGTC 3 cut(s) 33, 74, 1333
MmeI TCCRAC 4 cut(s) 7, 411, 939, 1079
MroI TCCGGA 1 cut(s) 202
MroXI GAANNNNTTC 1 cut(s) 786
MseI TTAA 6 cut(s) 600, 983, 1050, 1197, 1383, 1479
MslI CAYNNNNRTG 3 cut(s) 248, 610, 1314
MspI CCGG 2 cut(s) 203, 343
MspR9I CCNGG 2 cut(s) 443, 528
MunI CAATTG 2 cut(s) 1286, 1513
Mva1269I GAATGC 1 cut(s) 1268
MvaI CCWGG 2 cut(s) 443, 528
MwoI GCNNNNNNNGC 3 cut(s) 165, 265, 348
NdeII GATC 2 cut(s) 29, 1039
NlaIII CATG 6 cut(s) 253, 742, 822, 892, 1117, 1586
NlaIV GGNNCC 5 cut(s) 31, 219, 535, 909, 1492
NspV TTCGAA 1 cut(s) 1059
PceI AGGCCT 1 cut(s) 1505
PciSI GCTCTTC 1 cut(s) 175
PcsI WCGNNNNNNNCGW 1 cut(s) 294
PctI GAATGC 1 cut(s) 1268
PdmI GAANNNNTTC 1 cut(s) 786
PfeI GAWTC 2 cut(s) 4, 583
PflFI GACNNNGTC 2 cut(s) 374, 1597
PfoI TCCNGGA 1 cut(s) 441
PkrI GCNGC 3 cut(s) 61, 148, 533
PleI GAGTC 3 cut(s) 32, 74, 1333
PpsI GAGTC 3 cut(s) 32, 74, 1333
PshAI GACNNNNGTC 1 cut(s) 1443
Psp124BI GAGCTC 1 cut(s) 261
Psp1406I AACGTT 1 cut(s) 1163
Psp6I CCWGG 2 cut(s) 441, 526
PspGI CCWGG 2 cut(s) 441, 526
PspN4I GGNNCC 5 cut(s) 31, 219, 535, 909, 1492
PspPI GGNCC 2 cut(s) 131, 844
PstI CTGCAG 1 cut(s) 148
PstNI CAGNNNCTG 2 cut(s) 100, 143
PsuI RGATCY 1 cut(s) 29
PsyI GACNNNGTC 2 cut(s) 374, 1597
RsaI GTAC 2 cut(s) 461, 1249
RsaNI GTAC 2 cut(s) 460, 1248
RseI CAYNNNNRTG 3 cut(s) 248, 610, 1314
SacI GAGCTC 1 cut(s) 261
SalI GTCGAC 2 cut(s) 323, 395
SapI GCTCTTC 1 cut(s) 175
SaqAI TTAA 6 cut(s) 600, 983, 1050, 1197, 1383, 1479
SatI GCNGC 3 cut(s) 60, 147, 532
Sau3AI GATC 2 cut(s) 29, 1039
Sau96I GGNCC 2 cut(s) 131, 844
SchI GAGTC 3 cut(s) 33, 74, 1333
ScrFI CCNGG 2 cut(s) 443, 528
SduI GDGCHC 1 cut(s) 261
SfaNI GCATC 4 cut(s) 343, 403, 763, 1475
SfcI CTRYAG 3 cut(s) 144, 765, 1132
SfuI TTCGAA 1 cut(s) 1059
SinI GGWCC 2 cut(s) 131, 844
SmiMI CAYNNNNRTG 3 cut(s) 248, 610, 1314
SmlI CTYRAG 1 cut(s) 568
SmoI CTYRAG 1 cut(s) 568
SseBI AGGCCT 1 cut(s) 1505
SsiI CCGC 5 cut(s) 57, 426, 531, 1580, 1588
SspMI CTAG 3 cut(s) 165, 497, 1016
SstI GAGCTC 1 cut(s) 261
StuI AGGCCT 1 cut(s) 1505
StyD4I CCNGG 2 cut(s) 441, 526
StyI CCWWGG 1 cut(s) 653
TaaI ACNGT 3 cut(s) 406, 466, 1442
TaiI ACGT 4 cut(s) 378, 1068, 1166, 1601
TaqI TCGA 5 cut(s) 78, 324, 396, 1059, 1263
TaqII GACCGA 1 cut(s) 119
TatI WGTACW 1 cut(s) 459
TauI GCSGC 1 cut(s) 534
TfiI GAWTC 2 cut(s) 4, 583
Tru1I TTAA 6 cut(s) 600, 983, 1050, 1197, 1383, 1479
Tru9I TTAA 6 cut(s) 600, 983, 1050, 1197, 1383, 1479
TscAI CASTG 6 cut(s) 469, 554, 582, 594, 946, 1042
TseI GCWGC 2 cut(s) 59, 146
TspDTI ATGAA 5 cut(s) 324, 755, 912, 1098, 1514
TspRI CASTG 6 cut(s) 469, 554, 582, 594, 946, 1042
Tth111I GACNNNGTC 2 cut(s) 374, 1597
VpaK11BI GGWCC 2 cut(s) 131, 844
XagI CCTNNNNNAGG 1 cut(s) 1425
XapI RAATTY 3 cut(s) 685, 715, 742
XcmI CCANNNNNNNNNTGG 1 cut(s) 335
XmiI GTMKAC 2 cut(s) 324, 396
XmnI GAANNNNTTC 1 cut(s) 786
XspI CTAG 3 cut(s) 165, 497, 1016
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.