Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001673

Physical Location & Seq

Genomic Coordinates Forward (+)

428752 .. 430658

Gene Structure 1907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030883

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1821 bp

ATGTCCCAAGACTTGAAAACCCTCCAAGCCCAGATGGAAATTCCTCGTCCCCGTCCAAAAGTTATATCTGGGTCAATCCCAGCAGCCCCAGAGCTTCACAGCTCAGGAAGAAATCCTACGATTCCAGGTAACAGGGTTTTGGAACAAGATGCTGTGGTTGTTCTCAATAATATGGTTAATCCCGAAAATGCGGTGCTTGTTCTCAAGTACTTTCAGCAGAGGTTTAAACCAAAGAGGGAAGTGGTTCTCTATAATGTGACCTTGAAAGTTTTTAGGAAGTGTAAGGATTTGGAGAGAGCAGAGAAGCTGTTTTATGAGATACTTGAGAGAGGTGTTAAACCTGATAATGTTACATTTTCAACTATGATTAGCTGTGCTAGGATGTGTTATCTGCCTGATAAGGCTGTGGAGTGGTTTGAGAAGATGCCTACTTTTGGGTGTAATCCCGATGATGTCACCTATTCGGCTATGATTGACGCATATGGGCGTGCCGGTAATGTTGACAAGGCTTTTAGCTTGTATGACCGCGCTAGGACAGAGAAGTGGCGCATTGATCCAGTGACATTTGCAACGTTGATTAAGATTCACGGGCAATCGGGGAATTATGATGGGTGCTTGAATGTTTACGAGGAAATGAAGGCTATTGGGGTGAAGCCAAACATGGTTATTTATAATACTTTGTTGGATGCTATGGGAAGAGCTAAGAGGCCTTGGCAGGCCAAGAAAATTTACCGAGAGATGATCAGCAAGGGGTCTTCGCCAAATTGGGTGACCTATGCATCTCTGCTACGGGCCTTTGGTAGAGCTCGCTACGGTGATGATGCTCTGAATGTGTACAAGGAGATGAAGGAGAAGGGAATGGAGTTGAATGTCATTCTCTACAACACCCTCTTGTCTATGTGTGCTGATATTGGCTACACTGATCAAGCTATTGAGATTTTCGAAGACATGAAGAGTTCTGAAACTTGGAAGCCTGATAGTTGGACATTTTCATCCATGATTACCATATATTCCTGTAGCGGGAAAGTCTCAGAGGCAGAGATGACGTTGAATGAGATGGTGGAAGCTGGTTTCCAGCCTAATATCTTTATTTTGACATCTCTAATACAATGCTATGGGAAGGCCAAGCGTACTGATGATGTTGTCAGGGCATTCAATCAACTACTAGAATTGGGCATAACTCCTGATGAGCGTTTCTGTGGTTGTCTCCTGAATGTGATGACCCAAACACCAAATGATGAACTATCTAAGCTGACTGATTGCATTGAGCGGGGTAATGAGAAGCTTGGATATGTTGTAAGACTTCTGGTAGAGAAGCAAGACAGTAGTGAAAACTTCAGGAAGGAAGCATCAGAACTTTTTAACTCAGTTGGTTCTGATGTAAAGAAGGCCTACTGCAATTGCTTGATTGATCTTTGTGTGAACCTCGATCTCTTGGAGAGAGCCTGTGAGCTTCTAGACCTGGGGCTTACACTTGAGATATACACAGATATACAGTCAAGGTCTCCAACCCAGTGGTCTCTGTATCTCAAGGGTCTCTCTCTTGGGGCAGCTCTTACTGCATTACATGTTTGGATTAATGACTTGTCTCGTTCTTTGGAATCTGGAGAGGAGCTTCCACCTCTGCTTGGAATTAATACCGGACATGGGAAACATAAATATTCAGACAGAGGTCTAGCGAGTGTGTTCGAGTCACATCTGAAGGAAGTAGATGCTCCGTTCCATGAGGCCCCAGACAAGGTTGGCTGGTTTTTGACTACAAAGGTTGCAGTGATGTCATGGTTGGTGTCTAGAAGGTCACCAGAAGTAGTTGCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031425 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

607

Amino Acids

68.46

Weight (kDa)

5.99

Isoelectric Point (pI)

32.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	80 - 125	8.5e-10	PPR repeat family
PPR_2	PF13041	132 - 161	2.4e-06	PPR repeat family
TPR_24	PF23276	135 - 247	1.3e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	146 - 176	3.7e-10	PPR repeat
PPR_2	PF13041	152 - 194	6.6e-07	PPR repeat family
PPR	PF01535	152 - 176	4.6e-07	PPR repeat
PPR_long	PF17177	156 - 309	6.4e-14	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	183 - 232	9.8e-08	Pentatricopeptide repeat domain
TPR_24	PF23276	200 - 316	6.6e-06	Fungal tetratrico peptide repeats
PPR_2	PF13041	219 - 267	8.8e-12	PPR repeat family
PPR_3	PF13812	242 - 302	1.9e-11	Pentatricopeptide repeat domain
PPR	PF01535	257 - 287	6.4e-06	PPR repeat
PPR_long	PF17177	274 - 411	1.9e-13	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	278 - 337	3.8e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	290 - 335	1.9e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16390
fragaria_vesca	FvH4_3g00440 FvH4_3g00470
malus_domestica	MD00G1221000.v1.1 MD05G1360400.v1.1 MD08G1234300.v1.1 MD10G1337400.v1.1 MD10G1337800.v1.1 MD10G1338000.v1.1
prunus_persica	Prupe.3G138500_v2.0.a1 Prupe.4G005200_v2.0.a1
pyrus_communis	pycom05g32720 pycom10g28680 pycom10g28700 pycom10g28720 pycom10g28750
rosa_chinensis	RchiOBHm_Chr1g0364151 RchiOBHm_Chr2g0155431 RchiOBHm_Chr4g0402181 RchiOBHm_Chr5g0000631 RchiOBHm_Chr6g0271321
rosa_laevigata	RLG00000004254 RLG00000013858 RLG00000028931 RLG00000030883
rosa_multiflora	Rmu_co8004710.1_g000001 Rmu_co8021096.1_g000001 Rmu_co8161794.1_g000001 Rmu_sc0000795.1_g000110 Rmu_sc0001141.1_g000016 Rmu_sc0003662.1_g000007 Rmu_sc0003699.1_g000009 Rmu_sc0006695.1_g000081 Rmu_sc0010255.1_g000007 Rmu_sc0011992.1_g000014 Rmu_sc0016929.1_g000002 Rmu_sc0017523.1_g000008 Rmu_sc0021532.1_g000001 Rmu_sc0029877.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001310 Rroxscaffold_1G00075570 Rroxscaffold_4G00324290
rosa_rugosa	Rorug04G0385500 Rorug07G0309300.1
rosa_samantha	Rh5AG005400 Rh5BG007000 Rh5CG005700 Rh5DG005600
rosa_wichuraiana	Rw5G000530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	672
AccBSI	CCGCTC	1 cut(s)	1270
AccII	CGCG	1 cut(s)	528
AciI	CCGC	4 cut(s)	191, 526, 1020, 1270
AclI	AACGTT	1 cut(s)	572
AclWI	GGATC	1 cut(s)	548
AcsI	RAATTY	2 cut(s)	39, 726
AcuI	CTGAAG	2 cut(s)	1321, 1721
AfaI	GTAC	3 cut(s)	209, 836, 1132
AfiI	CCNNNNNNNGG	5 cut(s)	434, 1020, 1628, 1647, 1738
AflIII	ACRYGT	1 cut(s)	1567
AgsI	TTSAA	7 cut(s)	16, 265, 360, 619, 868, 1051, 1156
AjnI	CCWGG	2 cut(s)	124, 1461
Alw21I	GWGCWC	1 cut(s)	808
Alw26I	GTCTC	6 cut(s)	1033, 1211, 1509, 1524, 1541, 1593
AlwI	GGATC	1 cut(s)	548
AoxI	GGCC	6 cut(s)	707, 717, 792, 1122, 1389, 1728
ApeKI	GCWGC	3 cut(s)	83, 1550, 1814
ApoI	RAATTY	2 cut(s)	39, 726
AseI	ATTAAT	2 cut(s)	1578, 1635
Asp700I	GAANNNNTTC	1 cut(s)	243
AspLEI	GCGC	2 cut(s)	530, 549
AspS9I	GGNCC	2 cut(s)	792, 1729
AsuHPI	GGTGA	5 cut(s)	448, 661, 781, 827, 1791
AsuII	TTCGAA	1 cut(s)	942
BanII	GRGCYC	1 cut(s)	808
BarI	GAAGNNNNNNTAC	2 cut(s)	100, 132
BbsI	GAAGAC	2 cut(s)	747, 951
Bbv12I	GWGCWC	1 cut(s)	808
BbvI	GCAGC	3 cut(s)	95, 1562, 1801
BccI	CCATC	3 cut(s)	28, 602, 1051
BciT130I	CCWGG	2 cut(s)	126, 1463
BclI	TGATCA	2 cut(s)	741, 922
BcoDI	GTCTC	6 cut(s)	1033, 1211, 1509, 1524, 1541, 1593
BfaI	CTAG	6 cut(s)	378, 531, 1166, 1457, 1676, 1791
BfmI	CTRYAG	1 cut(s)	1015
BisI	GCNGC	3 cut(s)	84, 1551, 1815
BlsI	GCNGC	3 cut(s)	85, 1552, 1816
BmcAI	AGTACT	1 cut(s)	209
Bme1390I	CCNGG	2 cut(s)	126, 1463
BmgT120I	GGNCC	2 cut(s)	792, 1729
BmiI	GGNNCC	1 cut(s)	1731
BmrFI	CCNGG	2 cut(s)	126, 1463
BmrI	ACTGGG	1 cut(s)	1507
BmsI	GCATC	7 cut(s)	139, 414, 676, 788, 811, 1358, 1702
BmuI	ACTGGG	1 cut(s)	1507
BoxI	GACNNNNGTC	1 cut(s)	1671
BpiI	GAAGAC	2 cut(s)	747, 951
BpmI	CTGGAG	1 cut(s)	1626
Bpu10I	CCTNAGC	1 cut(s)	103
Bpu14I	TTCGAA	1 cut(s)	942
BpuEI	CTTGAG	4 cut(s)	188, 344, 1496, 1514
BsaI	GGTCTC	3 cut(s)	1509, 1524, 1541
BsaJI	CCNNGG	2 cut(s)	710, 1462
BsaWI	WCCGGW	1 cut(s)	1640
Bsc4I	CCNNNNNNNGG	5 cut(s)	434, 1020, 1628, 1647, 1738
Bse118I	RCCGGY	1 cut(s)	491
Bse1I	ACTGG	2 cut(s)	557, 1513
BseBI	CCWGG	2 cut(s)	126, 1463
BseDI	CCNNGG	2 cut(s)	710, 1462
BseGI	GGATG	3 cut(s)	387, 691, 992
BseLI	CCNNNNNNNGG	5 cut(s)	434, 1020, 1628, 1647, 1738
BseMII	CTCAG	3 cut(s)	117, 1044, 1380
BseNI	ACTGG	2 cut(s)	557, 1513
BseRI	GAGGAG	1 cut(s)	1625
BseXI	GCAGC	3 cut(s)	95, 1562, 1801
BseYI	CCCAGC	1 cut(s)	79
Bsh1236I	CGCG	1 cut(s)	528
BshFI	GGCC	6 cut(s)	709, 719, 794, 1124, 1391, 1730
BsiHKAI	GWGCWC	1 cut(s)	808
BsiSI	CCGG	2 cut(s)	492, 1641
BslFI	GGGAC	1 cut(s)	33
BslI	CCNNNNNNNGG	5 cut(s)	434, 1020, 1628, 1647, 1738
BsmAI	GTCTC	6 cut(s)	1033, 1211, 1509, 1524, 1541, 1593
BsmFI	GGGAC	1 cut(s)	33
BsmI	GAATGC	1 cut(s)	1151
BsnI	GGCC	6 cut(s)	709, 719, 794, 1124, 1391, 1730
Bso31I	GGTCTC	3 cut(s)	1509, 1524, 1541
Bsp119I	TTCGAA	1 cut(s)	942
Bsp1286I	GDGCHC	1 cut(s)	808
Bsp1407I	TGTACA	1 cut(s)	834
Bsp143I	GATC	5 cut(s)	553, 741, 922, 1411, 1429
BspACI	CCGC	4 cut(s)	191, 526, 1020, 1270
BspANI	GGCC	6 cut(s)	709, 719, 794, 1124, 1391, 1730
BspCNI	CTCAG	3 cut(s)	116, 1043, 1379
BspFNI	CGCG	1 cut(s)	528
BspLI	GGNNCC	1 cut(s)	1731
BspPI	GGATC	1 cut(s)	548
BspQI	GCTCTTC	1 cut(s)	691
BspT104I	TTCGAA	1 cut(s)	942
BspTNI	GGTCTC	3 cut(s)	1509, 1524, 1541
BsrBI	CCGCTC	1 cut(s)	1270
BsrFI	RCCGGY	1 cut(s)	491
BsrGI	TGTACA	1 cut(s)	834
BsrI	ACTGG	2 cut(s)	557, 1513
BssAI	RCCGGY	1 cut(s)	491
BssECI	CCNNGG	2 cut(s)	710, 1462
BssMI	GATC	5 cut(s)	553, 741, 922, 1411, 1429
BssT1I	CCWWGG	1 cut(s)	710
Bst2UI	CCWGG	2 cut(s)	126, 1463
Bst4CI	ACNGT	3 cut(s)	815, 1325, 1497
Bst6I	CTCTTC	2 cut(s)	691, 947
BstAUI	TGTACA	1 cut(s)	834
BstBI	TTCGAA	1 cut(s)	942
BstC8I	GCNNGC	3 cut(s)	489, 717, 808
BstDEI	CTNAG	6 cut(s)	103, 702, 1030, 1248, 1366, 1818
BstEII	GGTNACC	2 cut(s)	769, 1797
BstF5I	GGATG	3 cut(s)	387, 691, 992
BstFNI	CGCG	1 cut(s)	528
BstHHI	GCGC	2 cut(s)	530, 549
BstKTI	GATC	5 cut(s)	556, 744, 925, 1414, 1432
BstMAI	GTCTC	6 cut(s)	1033, 1211, 1509, 1524, 1541, 1593
BstMBI	GATC	5 cut(s)	553, 741, 922, 1411, 1429
BstMWI	GCNNNNNNNGC	1 cut(s)	1559
BstNI	CCWGG	2 cut(s)	126, 1463
BstNSI	RCATGY	1 cut(s)	1571
BstPAI	GACNNNNGTC	1 cut(s)	1671
BstPI	GGTNACC	2 cut(s)	769, 1797
BstSCI	CCNGG	2 cut(s)	124, 1461
BstSFI	CTRYAG	1 cut(s)	1015
BstUI	CGCG	1 cut(s)	528
BstV1I	GCAGC	3 cut(s)	95, 1562, 1801
BstV2I	GAAGAC	2 cut(s)	747, 951
BstXI	CCANNNNNNTGG	1 cut(s)	1515
BsuRI	GGCC	6 cut(s)	709, 719, 794, 1124, 1391, 1730
BtsCI	GGATG	3 cut(s)	387, 691, 992
BtsI	GCAGTG	1 cut(s)	1776
BtsIMutI	CAGTG	4 cut(s)	564, 918, 1520, 1776
Cac8I	GCNNGC	3 cut(s)	489, 717, 808
CfoI	GCGC	2 cut(s)	530, 549
Cfr10I	RCCGGY	1 cut(s)	491
Cfr13I	GGNCC	2 cut(s)	792, 1729
CseI	GACGC	1 cut(s)	485
Csp6I	GTAC	3 cut(s)	208, 835, 1131
CviAII	CATG	7 cut(s)	661, 949, 997, 1568, 1646, 1724, 1779
CviQI	GTAC	3 cut(s)	208, 835, 1131
DdeI	CTNAG	6 cut(s)	103, 702, 1030, 1248, 1366, 1818
DpnI	GATC	5 cut(s)	555, 743, 924, 1413, 1431
DpnII	GATC	5 cut(s)	553, 741, 922, 1411, 1429
DraI	TTTAAA	1 cut(s)	226
Eam1104I	CTCTTC	2 cut(s)	691, 947
EarI	CTCTTC	2 cut(s)	691, 947
Ecl136II	GAGCTC	1 cut(s)	806
Eco130I	CCWWGG	1 cut(s)	710
Eco147I	AGGCCT	2 cut(s)	709, 1391
Eco24I	GRGCYC	1 cut(s)	808
Eco31I	GGTCTC	3 cut(s)	1509, 1524, 1541
Eco53kI	GAGCTC	1 cut(s)	806
Eco57I	CTGAAG	2 cut(s)	1321, 1721
Eco91I	GGTNACC	2 cut(s)	769, 1797
EcoICRI	GAGCTC	1 cut(s)	806
EcoO109I	RGGNCCY	1 cut(s)	1729
EcoO65I	GGTNACC	2 cut(s)	769, 1797
EcoRII	CCWGG	2 cut(s)	124, 1461
EcoT14I	CCWWGG	1 cut(s)	710
EcoT22I	ATGCAT	1 cut(s)	781
EcoT38I	GRGCYC	1 cut(s)	808
ErhI	CCWWGG	1 cut(s)	710
FaeI	CATG	7 cut(s)	664, 952, 1000, 1571, 1649, 1727, 1782
FaqI	GGGAC	1 cut(s)	33
FatI	CATG	7 cut(s)	660, 948, 996, 1567, 1645, 1723, 1778
FauI	CCCGC	2 cut(s)	1013, 1263
FauNDI	CATATG	1 cut(s)	481
FbaI	TGATCA	2 cut(s)	741, 922
Fnu4HI	GCNGC	3 cut(s)	84, 1551, 1815
FokI	GGATG	3 cut(s)	394, 698, 979
FriOI	GRGCYC	1 cut(s)	808
Fsp4HI	GCNGC	3 cut(s)	84, 1551, 1815
FspBI	CTAG	6 cut(s)	378, 531, 1166, 1457, 1676, 1791
GlaI	GCGC	2 cut(s)	529, 548
GluI	GCNGC	3 cut(s)	84, 1551, 1815
GsaI	CCCAGC	1 cut(s)	83
GsuI	CTGGAG	1 cut(s)	1626
HaeIII	GGCC	6 cut(s)	709, 719, 794, 1124, 1391, 1730
HapII	CCGG	2 cut(s)	492, 1641
HgaI	GACGC	1 cut(s)	485
HhaI	GCGC	2 cut(s)	530, 549
Hin1II	CATG	7 cut(s)	664, 952, 1000, 1571, 1649, 1727, 1782
Hin6I	GCGC	2 cut(s)	528, 547
HinP1I	GCGC	2 cut(s)	528, 547
HincII	GTYRAC	1 cut(s)	502
HindII	GTYRAC	1 cut(s)	502
HindIII	AAGCTT	1 cut(s)	1283
HinfI	GANTC	4 cut(s)	121, 583, 1601, 1691
HpaII	CCGG	2 cut(s)	492, 1641
HphI	GGTGA	5 cut(s)	448, 661, 781, 827, 1791
Hpy166II	GTNNAC	4 cut(s)	502, 625, 835, 1423
Hpy188I	TCNGA	7 cut(s)	828, 961, 1033, 1354, 1378, 1666, 1701
Hpy188III	TCNNGA	9 cut(s)	105, 182, 446, 1184, 1210, 1339, 1457, 1605, 1791
Hpy8I	GTNNAC	4 cut(s)	502, 625, 835, 1423
HpyAV	CCTTC	8 cut(s)	631, 841, 847, 1114, 1336, 1381, 1696, 1788
HpyCH4III	ACNGT	3 cut(s)	815, 1325, 1497
HpyCH4IV	ACGT	2 cut(s)	572, 1046
HpyCH4V	TGCA	6 cut(s)	569, 779, 1263, 1398, 1562, 1769
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1559
HpyF3I	CTNAG	6 cut(s)	103, 702, 1030, 1248, 1366, 1818
HpySE526I	ACGT	2 cut(s)	572, 1046
Hsp92II	CATG	7 cut(s)	664, 952, 1000, 1571, 1649, 1727, 1782
HspAI	GCGC	2 cut(s)	528, 547
Ksp22I	TGATCA	2 cut(s)	741, 922
Kzo9I	GATC	5 cut(s)	553, 741, 922, 1411, 1429
LguI	GCTCTTC	1 cut(s)	691
LmnI	GCTCC	2 cut(s)	1612, 1720
Lsp1109I	GCAGC	3 cut(s)	95, 1562, 1801
LweI	GCATC	7 cut(s)	139, 414, 676, 788, 811, 1358, 1702
MaeI	CTAG	6 cut(s)	378, 531, 1166, 1457, 1676, 1791
MaeII	ACGT	2 cut(s)	572, 1046
MaeIII	GTNAC	8 cut(s)	128, 256, 349, 454, 559, 769, 1692, 1797
MalI	GATC	5 cut(s)	555, 743, 924, 1413, 1431
MbiI	CCGCTC	1 cut(s)	1270
MboI	GATC	5 cut(s)	553, 741, 922, 1411, 1429
MboII	GAAGA	6 cut(s)	120, 433, 708, 747, 956, 964
MfeI	CAATTG	1 cut(s)	1399
MhlI	GDGCHC	1 cut(s)	808
MluCI	AATT	7 cut(s)	39, 601, 726, 763, 1169, 1399, 1632
MlyI	GAGTC	1 cut(s)	1700
MmeI	TCCRAC	3 cut(s)	663, 962, 1532
Mph1103I	ATGCAT	1 cut(s)	781
MroXI	GAANNNNTTC	1 cut(s)	243
MseI	TTAA	7 cut(s)	177, 225, 336, 579, 1362, 1578, 1635
MspI	CCGG	2 cut(s)	492, 1641
MspR9I	CCNGG	2 cut(s)	126, 1463
MssI	GTTTAAAC	1 cut(s)	226
MunI	CAATTG	1 cut(s)	1399
Mva1269I	GAATGC	1 cut(s)	1151
MvaI	CCWGG	2 cut(s)	126, 1463
MvnI	CGCG	1 cut(s)	528
MwoI	GCNNNNNNNGC	1 cut(s)	1559
NdeI	CATATG	1 cut(s)	481
NdeII	GATC	5 cut(s)	553, 741, 922, 1411, 1429
NlaIII	CATG	7 cut(s)	664, 952, 1000, 1571, 1649, 1727, 1782
NlaIV	GGNNCC	1 cut(s)	1731
NmuCI	GTSAC	6 cut(s)	256, 454, 559, 769, 1692, 1797
NsiI	ATGCAT	1 cut(s)	781
NspI	RCATGY	1 cut(s)	1571
NspV	TTCGAA	1 cut(s)	942
PceI	AGGCCT	2 cut(s)	709, 1391
PciI	ACATGT	1 cut(s)	1567
PciSI	GCTCTTC	1 cut(s)	691
PctI	GAATGC	1 cut(s)	1151
PdmI	GAANNNNTTC	1 cut(s)	243
PfeI	GAWTC	3 cut(s)	121, 583, 1601
PkrI	GCNGC	3 cut(s)	85, 1552, 1816
PleI	GAGTC	1 cut(s)	1699
PmeI	GTTTAAAC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	1699
PscI	ACATGT	1 cut(s)	1567
PshAI	GACNNNNGTC	1 cut(s)	1671
PshBI	ATTAAT	2 cut(s)	1578, 1635
PsiI	TTATAA	1 cut(s)	672
Psp124BI	GAGCTC	1 cut(s)	808
Psp1406I	AACGTT	1 cut(s)	572
Psp6I	CCWGG	2 cut(s)	124, 1461
PspEI	GGTNACC	2 cut(s)	769, 1797
PspFI	CCCAGC	1 cut(s)	79
PspGI	CCWGG	2 cut(s)	124, 1461
PspN4I	GGNNCC	1 cut(s)	1731
PspPI	GGNCC	2 cut(s)	792, 1729
RsaI	GTAC	3 cut(s)	209, 836, 1132
RsaNI	GTAC	3 cut(s)	208, 835, 1131
SacI	GAGCTC	1 cut(s)	808
SapI	GCTCTTC	1 cut(s)	691
SaqAI	TTAA	7 cut(s)	177, 225, 336, 579, 1362, 1578, 1635
SatI	GCNGC	3 cut(s)	84, 1551, 1815
Sau3AI	GATC	5 cut(s)	553, 741, 922, 1411, 1429
Sau96I	GGNCC	2 cut(s)	792, 1729
ScaI	AGTACT	1 cut(s)	209
SchI	GAGTC	1 cut(s)	1700
ScrFI	CCNGG	2 cut(s)	126, 1463
SduI	GDGCHC	1 cut(s)	808
SfaNI	GCATC	7 cut(s)	139, 414, 676, 788, 811, 1358, 1702
SfcI	CTRYAG	1 cut(s)	1015
SfuI	TTCGAA	1 cut(s)	942
SmlI	CTYRAG	4 cut(s)	203, 323, 1475, 1529
SmoI	CTYRAG	4 cut(s)	203, 323, 1475, 1529
Sse9I	AATT	7 cut(s)	39, 601, 726, 763, 1169, 1399, 1632
SseBI	AGGCCT	2 cut(s)	709, 1391
SsiI	CCGC	4 cut(s)	191, 526, 1020, 1270
SspI	AATATT	1 cut(s)	1661
SspMI	CTAG	6 cut(s)	378, 531, 1166, 1457, 1676, 1791
SstI	GAGCTC	1 cut(s)	808
StuI	AGGCCT	2 cut(s)	709, 1391
StyD4I	CCNGG	2 cut(s)	124, 1461
StyI	CCWWGG	1 cut(s)	710
TaaI	ACNGT	3 cut(s)	815, 1325, 1497
TaiI	ACGT	2 cut(s)	575, 1049
TaqI	TCGA	3 cut(s)	942, 1428, 1689
TasI	AATT	7 cut(s)	39, 601, 726, 763, 1169, 1399, 1632
TatI	WGTACW	2 cut(s)	207, 834
TfiI	GAWTC	3 cut(s)	121, 583, 1601
Tru1I	TTAA	7 cut(s)	177, 225, 336, 579, 1362, 1578, 1635
Tru9I	TTAA	7 cut(s)	177, 225, 336, 579, 1362, 1578, 1635
TscAI	CASTG	4 cut(s)	564, 925, 1520, 1776
TseFI	GTSAC	6 cut(s)	256, 454, 559, 769, 1692, 1797
TseI	GCWGC	3 cut(s)	83, 1550, 1814
Tsp45I	GTSAC	6 cut(s)	256, 454, 559, 769, 1692, 1797
TspDTI	ATGAA	5 cut(s)	650, 860, 965, 981, 1254
TspGWI	ACGGA	1 cut(s)	1707
TspRI	CASTG	4 cut(s)	564, 925, 1520, 1776
VspI	ATTAAT	2 cut(s)	1578, 1635
XapI	RAATTY	2 cut(s)	39, 726
XbaI	TCTAGA	2 cut(s)	1456, 1790
XceI	RCATGY	1 cut(s)	1571
XmnI	GAANNNNTTC	1 cut(s)	243
XspI	CTAG	6 cut(s)	378, 531, 1166, 1457, 1676, 1791
ZrmI	AGTACT	1 cut(s)	209
Zsp2I	ATGCAT	1 cut(s)	781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.