pycom10g28700

Pentatricopeptide repeat-containing protein At4g16390

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
29213490 .. 29214830
1341 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g28700.1

Sequence Viewer

Length: 1341 bp
ATGCAAAGCAAAAGAAAAGCACCTTTCATAATCCCCCACAGGGTTAGGAATATGGCTCATCACTTGTGCTCTTCACCCTCTTCTCTCTTCCGCAACCCCCAAACTCCCTCCCGCTCTCTCCCTTCTTCTTCTTCTTCTTCCCCGATTGATTTCCGACTCCGAAGCTCTGCAATTAACACCCACAGACTCAGTTTTCCTTCACTGCAATTTCAGTCAAGAACCTCTCTGCAAATACACCATGTTTCTTTGCAAGACCCAGTTGCAGAAGAAGCCCAGAACTCCAAAGCTCCAGAAATTGGAAATATTCAGAGCCCAGATGGAAATTCCAGGTCTTTGTCGAAAAGCTATATCTGGGTCAATCCCAGCAGCCCCAGAGCTTCACAGCTGCGGCACAAGTCCTACAATTCCAGGTACGCTTCTTTGGTGAAAGTAGCTGAGTATTTGAACTCTTGCAACCCGATTGAAAGTGATGTTTTCGAAGCTTTAAAAGGTTTAGGGGATAATATTTTGGAACAAGACGCTGTGGTGGTTCTGAATAACATGGACAATCCGGAAAATGCTTTGCTTGCGCTTAATTACTTTCAGCAGAGGTTGAAACCAAAGCGGGAGGTGATTTTGTATAATGTGACTTTGAAAGTGTGTAGGAAGGGTAAGGATATGGAGAGAGCGGAGAAGCTGTTCGACGAAATACTCCAGAGAGGTGTTAAACCCGATAATGTTACCTTTTCGACTATGATTAGTTGCTCTAGGATTTGTTCTTTGCCTGATAAGGCTGTGGAGTGGTTTGAGAAGATGCCCGGTTTTGGGTGTAATCCGGATGATGTTACCTATTCGGCTATGATTGACGCCTATGGACATGCTGGTAAGGTTGAAATTGCTTTCAGTTTGTATGACCGGGCCAGGACTGAGATGTGGCGCATTGATCCAATGGCGTTTTCTACATTGATCAAAATTCACGGGCAATCGGGGAATTTTGATGGGTGCTTGAATGTTTATGAGGAAATGAAAGCTATAGGGGCTAAGCCAAACTTGGTTATTTATAACACTTTGTTGGATGCTATGGGAAGAGCTAGGAGGCCTTGGCAGGCCAAGAAAATTTACCGAGAGATGATCAGCAAGGGGCTTTCACCAAATTGGGTAACCTATGCAACTCTTTTAAGGGCCTATGGTAGAGCTCGCTACAGTGATGATGCTCTTAATGTTTATAAAGAGATGAAGGAAAGGGGACTGGAGTTAAATGTAAGTCTCTATAACACCCTTTTAGCTATGTGTGCTGATGTTGGTTACACCGACGAAGCCGTTGAGAGTTTTGAAGAAATGAAGAGTTTTCTGAAACACTGA

Protein Analysis

447

Amino Acids

50.52

Weight (kDa)

8.99

Isoelectric Point (pI)

48.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 204 - 247 3.2e-10 PPR repeat family
PPR_2 PF13041 255 - 284 2.7e-06 PPR repeat family
PPR_1 PF12854 269 - 299 3.6e-07 PPR repeat
PPR_long PF17177 290 - 438 3.8e-14 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 342 - 389 1.2e-12 PPR repeat family
PPR_3 PF13812 365 - 425 5.5e-12 Pentatricopeptide repeat domain
PPR_2 PF13041 380 - 414 1.2e-06 PPR repeat family
PPR PF01535 380 - 410 7.8e-07 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1041, 1206
AccB7I CCANNNNNTGG 1 cut(s) 296
AccBSI CCGCTC 2 cut(s) 114, 668
AccIII TCCGGA 2 cut(s) 550, 814
AciI CCGC 5 cut(s) 91, 112, 388, 604, 668
AclWI GGATC 1 cut(s) 917
AcsI RAATTY 4 cut(s) 322, 951, 970, 1095
AcyI GRCGYC 1 cut(s) 846
AfaI GTAC 1 cut(s) 413
AfiI CCNNNNNNNGG 4 cut(s) 40, 296, 803, 804
AgsI TTSAA 7 cut(s) 445, 464, 595, 634, 872, 988, 1313
AjnI CCWGG 3 cut(s) 326, 407, 899
AjuI GAANNNNNNNTTGG 2 cut(s) 919, 951
AloI GAACNNNNNNTCC 2 cut(s) 662, 694
Alw21I GWGCWC 2 cut(s) 71, 1177
Alw26I GTCTC 1 cut(s) 1250
AlwI GGATC 1 cut(s) 917
Aor13HI TCCGGA 2 cut(s) 550, 814
AoxI GGCC 4 cut(s) 897, 1076, 1086, 1161
ApeKI GCWGC 2 cut(s) 366, 385
ApoI RAATTY 4 cut(s) 322, 951, 970, 1095
Asp700I GAANNNNTTC 1 cut(s) 677
AspLEI GCGC 2 cut(s) 571, 918
AspS9I GGNCC 2 cut(s) 897, 1161
AsuC2I CCSGG 2 cut(s) 798, 896
AsuHPI GGTGA 4 cut(s) 66, 436, 622, 1119
AsuII TTCGAA 1 cut(s) 477
BanII GRGCYC 2 cut(s) 314, 1177
Bbv12I GWGCWC 2 cut(s) 71, 1177
BbvI GCAGC 2 cut(s) 372, 378
BccI CCATC 2 cut(s) 311, 971
BceAI ACGGC 1 cut(s) 1283
BciT130I CCWGG 3 cut(s) 328, 409, 901
BclI TGATCA 2 cut(s) 945, 1110
BcnI CCSGG 2 cut(s) 798, 896
BcoDI GTCTC 1 cut(s) 1250
BfaI CTAG 2 cut(s) 747, 1071
BfmI CTRYAG 2 cut(s) 1011, 1180
BisI GCNGC 3 cut(s) 367, 386, 389
BlpI GCTNAGC 1 cut(s) 1020
BlsI GCNGC 3 cut(s) 368, 387, 390
Bme1390I CCNGG 5 cut(s) 328, 409, 798, 896, 901
BmgT120I GGNCC 2 cut(s) 897, 1161
BmrFI CCNGG 5 cut(s) 328, 409, 798, 896, 901
BmrI ACTGGG 1 cut(s) 251
BmsI GCATC 3 cut(s) 783, 1045, 1180
BmuI ACTGGG 1 cut(s) 251
BpmI CTGGAG 3 cut(s) 273, 677, 1250
Bpu1102I GCTNAGC 1 cut(s) 1020
Bpu14I TTCGAA 1 cut(s) 477
BpuMI CCSGG 2 cut(s) 798, 896
BsaHI GRCGYC 1 cut(s) 846
BsaJI CCNNGG 1 cut(s) 1079
BsaWI WCCGGW 2 cut(s) 550, 814
BsaXI ACNNNNNCTCC 2 cut(s) 662, 692
Bsc4I CCNNNNNNNGG 4 cut(s) 40, 296, 803, 804
Bse1I ACTGG 2 cut(s) 257, 1233
BseAI TCCGGA 2 cut(s) 550, 814
BseBI CCWGG 3 cut(s) 328, 409, 901
BseDI CCNNGG 1 cut(s) 1079
BseGI GGATG 2 cut(s) 823, 1060
BseLI CCNNNNNNNGG 4 cut(s) 40, 296, 803, 804
BseMII CTCAG 3 cut(s) 202, 426, 897
BseNI ACTGG 2 cut(s) 257, 1233
BseXI GCAGC 2 cut(s) 372, 378
BseYI CCCAGC 1 cut(s) 362
BshFI GGCC 4 cut(s) 899, 1078, 1088, 1163
BsiHKAI GWGCWC 2 cut(s) 71, 1177
BsiSI CCGG 4 cut(s) 551, 798, 815, 895
BslFI GGGAC 1 cut(s) 1239
BslI CCNNNNNNNGG 4 cut(s) 40, 296, 803, 804
BsmAI GTCTC 1 cut(s) 1250
BsmFI GGGAC 1 cut(s) 1239
BsnI GGCC 4 cut(s) 899, 1078, 1088, 1163
Bsp119I TTCGAA 1 cut(s) 477
Bsp1286I GDGCHC 3 cut(s) 71, 314, 1177
Bsp13I TCCGGA 2 cut(s) 550, 814
Bsp143I GATC 3 cut(s) 922, 945, 1110
Bsp1720I GCTNAGC 1 cut(s) 1020
BspACI CCGC 5 cut(s) 91, 112, 388, 604, 668
BspANI GGCC 4 cut(s) 899, 1078, 1088, 1163
BspCNI CTCAG 3 cut(s) 201, 427, 898
BspEI TCCGGA 2 cut(s) 550, 814
BspPI GGATC 1 cut(s) 917
BspQI GCTCTTC 2 cut(s) 76, 1060
BspT104I TTCGAA 1 cut(s) 477
BsrBI CCGCTC 2 cut(s) 114, 668
BsrI ACTGG 2 cut(s) 257, 1233
BssECI CCNNGG 1 cut(s) 1079
BssMI GATC 3 cut(s) 922, 945, 1110
BssNI GRCGYC 1 cut(s) 846
BssT1I CCWWGG 1 cut(s) 1079
Bst2UI CCWGG 3 cut(s) 328, 409, 901
Bst4CI ACNGT 1 cut(s) 1184
Bst6I CTCTTC 5 cut(s) 76, 85, 92, 1060, 1316
BstACI GRCGYC 1 cut(s) 846
BstBI TTCGAA 1 cut(s) 477
BstC8I GCNNGC 3 cut(s) 567, 1086, 1177
BstDEI CTNAG 4 cut(s) 188, 435, 906, 1020
BstEII GGTNACC 1 cut(s) 1138
BstF5I GGATG 2 cut(s) 823, 1060
BstHHI GCGC 2 cut(s) 571, 918
BstKTI GATC 3 cut(s) 925, 948, 1113
BstMAI GTCTC 1 cut(s) 1250
BstMBI GATC 3 cut(s) 922, 945, 1110
BstMWI GCNNNNNNNGC 4 cut(s) 269, 566, 1016, 1271
BstNI CCWGG 3 cut(s) 328, 409, 901
BstNSI RCATGY 1 cut(s) 860
BstPI GGTNACC 1 cut(s) 1138
BstSCI CCNGG 5 cut(s) 326, 407, 796, 894, 899
BstSFI CTRYAG 2 cut(s) 1011, 1180
BstV1I GCAGC 2 cut(s) 372, 378
BsuRI GGCC 4 cut(s) 899, 1078, 1088, 1163
BtsCI GGATG 2 cut(s) 823, 1060
BtsI GCAGTG 1 cut(s) 200
BtsIMutI CAGTG 3 cut(s) 200, 1189, 1336
Cac8I GCNNGC 3 cut(s) 567, 1086, 1177
CfoI GCGC 2 cut(s) 571, 918
Cfr13I GGNCC 2 cut(s) 897, 1161
CseI GACGC 2 cut(s) 527, 854
Csp6I GTAC 1 cut(s) 412
CviAII CATG 3 cut(s) 239, 541, 857
CviQI GTAC 1 cut(s) 412
DdeI CTNAG 4 cut(s) 188, 435, 906, 1020
DpnI GATC 3 cut(s) 924, 947, 1112
DpnII GATC 3 cut(s) 922, 945, 1110
DraI TTTAAA 1 cut(s) 486
Eam1104I CTCTTC 5 cut(s) 76, 85, 92, 1060, 1316
EarI CTCTTC 5 cut(s) 76, 85, 92, 1060, 1316
Ecl136II GAGCTC 1 cut(s) 1175
Eco130I CCWWGG 1 cut(s) 1079
Eco147I AGGCCT 1 cut(s) 1078
Eco24I GRGCYC 2 cut(s) 314, 1177
Eco53kI GAGCTC 1 cut(s) 1175
Eco91I GGTNACC 1 cut(s) 1138
EcoICRI GAGCTC 1 cut(s) 1175
EcoO109I RGGNCCY 1 cut(s) 1161
EcoO65I GGTNACC 1 cut(s) 1138
EcoRII CCWGG 3 cut(s) 326, 407, 899
EcoT14I CCWWGG 1 cut(s) 1079
EcoT38I GRGCYC 2 cut(s) 314, 1177
ErhI CCWWGG 1 cut(s) 1079
FaeI CATG 3 cut(s) 242, 544, 860
FalI AAGNNNNNCTT 2 cut(s) 1013, 1045
FaqI GGGAC 1 cut(s) 1239
FatI CATG 3 cut(s) 238, 540, 856
FauI CCCGC 2 cut(s) 119, 597
FbaI TGATCA 2 cut(s) 945, 1110
Fnu4HI GCNGC 3 cut(s) 367, 386, 389
FokI GGATG 2 cut(s) 830, 1067
FriOI GRGCYC 2 cut(s) 314, 1177
Fsp4HI GCNGC 3 cut(s) 367, 386, 389
FspBI CTAG 2 cut(s) 747, 1071
GlaI GCGC 2 cut(s) 570, 917
GluI GCNGC 3 cut(s) 367, 386, 389
GsaI CCCAGC 1 cut(s) 366
GsuI CTGGAG 3 cut(s) 273, 677, 1250
HaeIII GGCC 4 cut(s) 899, 1078, 1088, 1163
HapII CCGG 4 cut(s) 551, 798, 815, 895
HgaI GACGC 2 cut(s) 527, 854
HhaI GCGC 2 cut(s) 571, 918
Hin1I GRCGYC 1 cut(s) 846
Hin1II CATG 3 cut(s) 242, 544, 860
Hin6I GCGC 2 cut(s) 569, 916
HinP1I GCGC 2 cut(s) 569, 916
HindIII AAGCTT 1 cut(s) 480
HinfI GANTC 2 cut(s) 156, 186
HpaII CCGG 4 cut(s) 551, 798, 815, 895
HphI GGTGA 4 cut(s) 66, 436, 622, 1119
Hpy188I TCNGA 5 cut(s) 155, 161, 309, 534, 1332
Hpy188III TCNNGA 5 cut(s) 216, 290, 551, 694, 815
Hpy99I CGWCG 2 cut(s) 686, 1295
HpyAV CCTTC 4 cut(s) 132, 207, 640, 1210
HpyCH4III ACNGT 1 cut(s) 1184
HpyCH4V TGCA 8 cut(s) 4, 170, 205, 229, 250, 263, 453, 1148
HpyF10VI GCNNNNNNNGC 4 cut(s) 269, 566, 1016, 1271
HpyF3I CTNAG 4 cut(s) 188, 435, 906, 1020
Hsp92I GRCGYC 1 cut(s) 846
Hsp92II CATG 3 cut(s) 242, 544, 860
HspAI GCGC 2 cut(s) 569, 916
Kpn2I TCCGGA 2 cut(s) 550, 814
Ksp22I TGATCA 2 cut(s) 945, 1110
Kzo9I GATC 3 cut(s) 922, 945, 1110
LguI GCTCTTC 2 cut(s) 76, 1060
LmnI GCTCC 1 cut(s) 292
Lsp1109I GCAGC 2 cut(s) 372, 378
LweI GCATC 3 cut(s) 783, 1045, 1180
MaeI CTAG 2 cut(s) 747, 1071
MaeIII GTNAC 5 cut(s) 625, 718, 823, 1138, 1283
MalI GATC 3 cut(s) 924, 947, 1112
MbiI CCGCTC 2 cut(s) 114, 668
MboI GATC 3 cut(s) 922, 945, 1110
MhlI GDGCHC 3 cut(s) 71, 314, 1177
MlyI GAGTC 2 cut(s) 150, 180
MmeI TCCRAC 2 cut(s) 178, 1032
MnlI CCTC 8 cut(s) 88, 118, 232, 582, 601, 692, 991, 1068
MroI TCCGGA 2 cut(s) 550, 814
MroXI GAANNNNTTC 1 cut(s) 677
MseI TTAA 7 cut(s) 174, 485, 573, 705, 1157, 1197, 1235
MspA1I CMGCKG 1 cut(s) 385
MspI CCGG 4 cut(s) 551, 798, 815, 895
MspR9I CCNGG 5 cut(s) 328, 409, 798, 896, 901
MvaI CCWGG 3 cut(s) 328, 409, 901
MwoI GCNNNNNNNGC 4 cut(s) 269, 566, 1016, 1271
NciI CCSGG 2 cut(s) 798, 896
NdeII GATC 3 cut(s) 922, 945, 1110
NlaIII CATG 3 cut(s) 242, 544, 860
NmuCI GTSAC 1 cut(s) 625
NspI RCATGY 1 cut(s) 860
NspV TTCGAA 1 cut(s) 477
PceI AGGCCT 1 cut(s) 1078
PciSI GCTCTTC 2 cut(s) 76, 1060
PdmI GAANNNNTTC 1 cut(s) 677
PflMI CCANNNNNTGG 1 cut(s) 296
PkrI GCNGC 3 cut(s) 368, 387, 390
PleI GAGTC 2 cut(s) 150, 180
PpsI GAGTC 2 cut(s) 150, 180
PsiI TTATAA 2 cut(s) 1041, 1206
Psp124BI GAGCTC 1 cut(s) 1177
Psp6I CCWGG 3 cut(s) 326, 407, 899
PspEI GGTNACC 1 cut(s) 1138
PspFI CCCAGC 1 cut(s) 362
PspGI CCWGG 3 cut(s) 326, 407, 899
PspPI GGNCC 2 cut(s) 897, 1161
PvuII CAGCTG 1 cut(s) 385
RsaI GTAC 1 cut(s) 413
RsaNI GTAC 1 cut(s) 412
SacI GAGCTC 1 cut(s) 1177
SapI GCTCTTC 2 cut(s) 76, 1060
SaqAI TTAA 7 cut(s) 174, 485, 573, 705, 1157, 1197, 1235
SatI GCNGC 3 cut(s) 367, 386, 389
Sau3AI GATC 3 cut(s) 922, 945, 1110
Sau96I GGNCC 2 cut(s) 897, 1161
SchI GAGTC 2 cut(s) 150, 180
ScrFI CCNGG 5 cut(s) 328, 409, 798, 896, 901
SduI GDGCHC 3 cut(s) 71, 314, 1177
SfaNI GCATC 3 cut(s) 783, 1045, 1180
SfcI CTRYAG 2 cut(s) 1011, 1180
SfuI TTCGAA 1 cut(s) 477
SseBI AGGCCT 1 cut(s) 1078
SsiI CCGC 5 cut(s) 91, 112, 388, 604, 668
SspI AATATT 2 cut(s) 304, 505
SspMI CTAG 2 cut(s) 747, 1071
SstI GAGCTC 1 cut(s) 1177
StuI AGGCCT 1 cut(s) 1078
StyD4I CCNGG 5 cut(s) 326, 407, 796, 894, 899
StyI CCWWGG 1 cut(s) 1079
TaaI ACNGT 1 cut(s) 1184
TaqI TCGA 4 cut(s) 338, 477, 681, 728
TauI GCSGC 1 cut(s) 391
Tru1I TTAA 7 cut(s) 174, 485, 573, 705, 1157, 1197, 1235
Tru9I TTAA 7 cut(s) 174, 485, 573, 705, 1157, 1197, 1235
TscAI CASTG 2 cut(s) 207, 1189
TseFI GTSAC 1 cut(s) 625
TseI GCWGC 2 cut(s) 366, 385
Tsp45I GTSAC 1 cut(s) 625
TspDTI ATGAA 4 cut(s) 16, 1019, 1229, 1334
TspRI CASTG 2 cut(s) 207, 1189
Van91I CCANNNNNTGG 1 cut(s) 296
XapI RAATTY 4 cut(s) 322, 951, 970, 1095
XceI RCATGY 1 cut(s) 860
XmnI GAANNNNTTC 1 cut(s) 677
XspI CTAG 2 cut(s) 747, 1071
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.