Pentatricopeptide repeat-containing protein At4g16390
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 204 - 247 | 3.2e-10 | PPR repeat family |
| PPR_2 | PF13041 | 255 - 284 | 2.7e-06 | PPR repeat family |
| PPR_1 | PF12854 | 269 - 299 | 3.6e-07 | PPR repeat |
| PPR_long | PF17177 | 290 - 438 | 3.8e-14 | Pentacotripeptide-repeat region of PRORP |
| PPR_2 | PF13041 | 342 - 389 | 1.2e-12 | PPR repeat family |
| PPR_3 | PF13812 | 365 - 425 | 5.5e-12 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 380 - 414 | 1.2e-06 | PPR repeat family |
| PPR | PF01535 | 380 - 410 | 7.8e-07 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1041, 1206 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 296 |
| AccBSI | CCGCTC | 2 cut(s) | 114, 668 |
| AccIII | TCCGGA | 2 cut(s) | 550, 814 |
| AciI | CCGC | 5 cut(s) | 91, 112, 388, 604, 668 |
| AclWI | GGATC | 1 cut(s) | 917 |
| AcsI | RAATTY | 4 cut(s) | 322, 951, 970, 1095 |
| AcyI | GRCGYC | 1 cut(s) | 846 |
| AfaI | GTAC | 1 cut(s) | 413 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 40, 296, 803, 804 |
| AgsI | TTSAA | 7 cut(s) | 445, 464, 595, 634, 872, 988, 1313 |
| AjnI | CCWGG | 3 cut(s) | 326, 407, 899 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 919, 951 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 662, 694 |
| Alw21I | GWGCWC | 2 cut(s) | 71, 1177 |
| Alw26I | GTCTC | 1 cut(s) | 1250 |
| AlwI | GGATC | 1 cut(s) | 917 |
| Aor13HI | TCCGGA | 2 cut(s) | 550, 814 |
| AoxI | GGCC | 4 cut(s) | 897, 1076, 1086, 1161 |
| ApeKI | GCWGC | 2 cut(s) | 366, 385 |
| ApoI | RAATTY | 4 cut(s) | 322, 951, 970, 1095 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 677 |
| AspLEI | GCGC | 2 cut(s) | 571, 918 |
| AspS9I | GGNCC | 2 cut(s) | 897, 1161 |
| AsuC2I | CCSGG | 2 cut(s) | 798, 896 |
| AsuHPI | GGTGA | 4 cut(s) | 66, 436, 622, 1119 |
| AsuII | TTCGAA | 1 cut(s) | 477 |
| BanII | GRGCYC | 2 cut(s) | 314, 1177 |
| Bbv12I | GWGCWC | 2 cut(s) | 71, 1177 |
| BbvI | GCAGC | 2 cut(s) | 372, 378 |
| BccI | CCATC | 2 cut(s) | 311, 971 |
| BceAI | ACGGC | 1 cut(s) | 1283 |
| BciT130I | CCWGG | 3 cut(s) | 328, 409, 901 |
| BclI | TGATCA | 2 cut(s) | 945, 1110 |
| BcnI | CCSGG | 2 cut(s) | 798, 896 |
| BcoDI | GTCTC | 1 cut(s) | 1250 |
| BfaI | CTAG | 2 cut(s) | 747, 1071 |
| BfmI | CTRYAG | 2 cut(s) | 1011, 1180 |
| BisI | GCNGC | 3 cut(s) | 367, 386, 389 |
| BlpI | GCTNAGC | 1 cut(s) | 1020 |
| BlsI | GCNGC | 3 cut(s) | 368, 387, 390 |
| Bme1390I | CCNGG | 5 cut(s) | 328, 409, 798, 896, 901 |
| BmgT120I | GGNCC | 2 cut(s) | 897, 1161 |
| BmrFI | CCNGG | 5 cut(s) | 328, 409, 798, 896, 901 |
| BmrI | ACTGGG | 1 cut(s) | 251 |
| BmsI | GCATC | 3 cut(s) | 783, 1045, 1180 |
| BmuI | ACTGGG | 1 cut(s) | 251 |
| BpmI | CTGGAG | 3 cut(s) | 273, 677, 1250 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1020 |
| Bpu14I | TTCGAA | 1 cut(s) | 477 |
| BpuMI | CCSGG | 2 cut(s) | 798, 896 |
| BsaHI | GRCGYC | 1 cut(s) | 846 |
| BsaJI | CCNNGG | 1 cut(s) | 1079 |
| BsaWI | WCCGGW | 2 cut(s) | 550, 814 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 662, 692 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 40, 296, 803, 804 |
| Bse1I | ACTGG | 2 cut(s) | 257, 1233 |
| BseAI | TCCGGA | 2 cut(s) | 550, 814 |
| BseBI | CCWGG | 3 cut(s) | 328, 409, 901 |
| BseDI | CCNNGG | 1 cut(s) | 1079 |
| BseGI | GGATG | 2 cut(s) | 823, 1060 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 40, 296, 803, 804 |
| BseMII | CTCAG | 3 cut(s) | 202, 426, 897 |
| BseNI | ACTGG | 2 cut(s) | 257, 1233 |
| BseXI | GCAGC | 2 cut(s) | 372, 378 |
| BseYI | CCCAGC | 1 cut(s) | 362 |
| BshFI | GGCC | 4 cut(s) | 899, 1078, 1088, 1163 |
| BsiHKAI | GWGCWC | 2 cut(s) | 71, 1177 |
| BsiSI | CCGG | 4 cut(s) | 551, 798, 815, 895 |
| BslFI | GGGAC | 1 cut(s) | 1239 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 40, 296, 803, 804 |
| BsmAI | GTCTC | 1 cut(s) | 1250 |
| BsmFI | GGGAC | 1 cut(s) | 1239 |
| BsnI | GGCC | 4 cut(s) | 899, 1078, 1088, 1163 |
| Bsp119I | TTCGAA | 1 cut(s) | 477 |
| Bsp1286I | GDGCHC | 3 cut(s) | 71, 314, 1177 |
| Bsp13I | TCCGGA | 2 cut(s) | 550, 814 |
| Bsp143I | GATC | 3 cut(s) | 922, 945, 1110 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1020 |
| BspACI | CCGC | 5 cut(s) | 91, 112, 388, 604, 668 |
| BspANI | GGCC | 4 cut(s) | 899, 1078, 1088, 1163 |
| BspCNI | CTCAG | 3 cut(s) | 201, 427, 898 |
| BspEI | TCCGGA | 2 cut(s) | 550, 814 |
| BspPI | GGATC | 1 cut(s) | 917 |
| BspQI | GCTCTTC | 2 cut(s) | 76, 1060 |
| BspT104I | TTCGAA | 1 cut(s) | 477 |
| BsrBI | CCGCTC | 2 cut(s) | 114, 668 |
| BsrI | ACTGG | 2 cut(s) | 257, 1233 |
| BssECI | CCNNGG | 1 cut(s) | 1079 |
| BssMI | GATC | 3 cut(s) | 922, 945, 1110 |
| BssNI | GRCGYC | 1 cut(s) | 846 |
| BssT1I | CCWWGG | 1 cut(s) | 1079 |
| Bst2UI | CCWGG | 3 cut(s) | 328, 409, 901 |
| Bst4CI | ACNGT | 1 cut(s) | 1184 |
| Bst6I | CTCTTC | 5 cut(s) | 76, 85, 92, 1060, 1316 |
| BstACI | GRCGYC | 1 cut(s) | 846 |
| BstBI | TTCGAA | 1 cut(s) | 477 |
| BstC8I | GCNNGC | 3 cut(s) | 567, 1086, 1177 |
| BstDEI | CTNAG | 4 cut(s) | 188, 435, 906, 1020 |
| BstEII | GGTNACC | 1 cut(s) | 1138 |
| BstF5I | GGATG | 2 cut(s) | 823, 1060 |
| BstHHI | GCGC | 2 cut(s) | 571, 918 |
| BstKTI | GATC | 3 cut(s) | 925, 948, 1113 |
| BstMAI | GTCTC | 1 cut(s) | 1250 |
| BstMBI | GATC | 3 cut(s) | 922, 945, 1110 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 269, 566, 1016, 1271 |
| BstNI | CCWGG | 3 cut(s) | 328, 409, 901 |
| BstNSI | RCATGY | 1 cut(s) | 860 |
| BstPI | GGTNACC | 1 cut(s) | 1138 |
| BstSCI | CCNGG | 5 cut(s) | 326, 407, 796, 894, 899 |
| BstSFI | CTRYAG | 2 cut(s) | 1011, 1180 |
| BstV1I | GCAGC | 2 cut(s) | 372, 378 |
| BsuRI | GGCC | 4 cut(s) | 899, 1078, 1088, 1163 |
| BtsCI | GGATG | 2 cut(s) | 823, 1060 |
| BtsI | GCAGTG | 1 cut(s) | 200 |
| BtsIMutI | CAGTG | 3 cut(s) | 200, 1189, 1336 |
| Cac8I | GCNNGC | 3 cut(s) | 567, 1086, 1177 |
| CfoI | GCGC | 2 cut(s) | 571, 918 |
| Cfr13I | GGNCC | 2 cut(s) | 897, 1161 |
| CseI | GACGC | 2 cut(s) | 527, 854 |
| Csp6I | GTAC | 1 cut(s) | 412 |
| CviAII | CATG | 3 cut(s) | 239, 541, 857 |
| CviQI | GTAC | 1 cut(s) | 412 |
| DdeI | CTNAG | 4 cut(s) | 188, 435, 906, 1020 |
| DpnI | GATC | 3 cut(s) | 924, 947, 1112 |
| DpnII | GATC | 3 cut(s) | 922, 945, 1110 |
| DraI | TTTAAA | 1 cut(s) | 486 |
| Eam1104I | CTCTTC | 5 cut(s) | 76, 85, 92, 1060, 1316 |
| EarI | CTCTTC | 5 cut(s) | 76, 85, 92, 1060, 1316 |
| Ecl136II | GAGCTC | 1 cut(s) | 1175 |
| Eco130I | CCWWGG | 1 cut(s) | 1079 |
| Eco147I | AGGCCT | 1 cut(s) | 1078 |
| Eco24I | GRGCYC | 2 cut(s) | 314, 1177 |
| Eco53kI | GAGCTC | 1 cut(s) | 1175 |
| Eco91I | GGTNACC | 1 cut(s) | 1138 |
| EcoICRI | GAGCTC | 1 cut(s) | 1175 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1161 |
| EcoO65I | GGTNACC | 1 cut(s) | 1138 |
| EcoRII | CCWGG | 3 cut(s) | 326, 407, 899 |
| EcoT14I | CCWWGG | 1 cut(s) | 1079 |
| EcoT38I | GRGCYC | 2 cut(s) | 314, 1177 |
| ErhI | CCWWGG | 1 cut(s) | 1079 |
| FaeI | CATG | 3 cut(s) | 242, 544, 860 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1013, 1045 |
| FaqI | GGGAC | 1 cut(s) | 1239 |
| FatI | CATG | 3 cut(s) | 238, 540, 856 |
| FauI | CCCGC | 2 cut(s) | 119, 597 |
| FbaI | TGATCA | 2 cut(s) | 945, 1110 |
| Fnu4HI | GCNGC | 3 cut(s) | 367, 386, 389 |
| FokI | GGATG | 2 cut(s) | 830, 1067 |
| FriOI | GRGCYC | 2 cut(s) | 314, 1177 |
| Fsp4HI | GCNGC | 3 cut(s) | 367, 386, 389 |
| FspBI | CTAG | 2 cut(s) | 747, 1071 |
| GlaI | GCGC | 2 cut(s) | 570, 917 |
| GluI | GCNGC | 3 cut(s) | 367, 386, 389 |
| GsaI | CCCAGC | 1 cut(s) | 366 |
| GsuI | CTGGAG | 3 cut(s) | 273, 677, 1250 |
| HaeIII | GGCC | 4 cut(s) | 899, 1078, 1088, 1163 |
| HapII | CCGG | 4 cut(s) | 551, 798, 815, 895 |
| HgaI | GACGC | 2 cut(s) | 527, 854 |
| HhaI | GCGC | 2 cut(s) | 571, 918 |
| Hin1I | GRCGYC | 1 cut(s) | 846 |
| Hin1II | CATG | 3 cut(s) | 242, 544, 860 |
| Hin6I | GCGC | 2 cut(s) | 569, 916 |
| HinP1I | GCGC | 2 cut(s) | 569, 916 |
| HindIII | AAGCTT | 1 cut(s) | 480 |
| HinfI | GANTC | 2 cut(s) | 156, 186 |
| HpaII | CCGG | 4 cut(s) | 551, 798, 815, 895 |
| HphI | GGTGA | 4 cut(s) | 66, 436, 622, 1119 |
| Hpy188I | TCNGA | 5 cut(s) | 155, 161, 309, 534, 1332 |
| Hpy188III | TCNNGA | 5 cut(s) | 216, 290, 551, 694, 815 |
| Hpy99I | CGWCG | 2 cut(s) | 686, 1295 |
| HpyAV | CCTTC | 4 cut(s) | 132, 207, 640, 1210 |
| HpyCH4III | ACNGT | 1 cut(s) | 1184 |
| HpyCH4V | TGCA | 8 cut(s) | 4, 170, 205, 229, 250, 263, 453, 1148 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 269, 566, 1016, 1271 |
| HpyF3I | CTNAG | 4 cut(s) | 188, 435, 906, 1020 |
| Hsp92I | GRCGYC | 1 cut(s) | 846 |
| Hsp92II | CATG | 3 cut(s) | 242, 544, 860 |
| HspAI | GCGC | 2 cut(s) | 569, 916 |
| Kpn2I | TCCGGA | 2 cut(s) | 550, 814 |
| Ksp22I | TGATCA | 2 cut(s) | 945, 1110 |
| Kzo9I | GATC | 3 cut(s) | 922, 945, 1110 |
| LguI | GCTCTTC | 2 cut(s) | 76, 1060 |
| LmnI | GCTCC | 1 cut(s) | 292 |
| Lsp1109I | GCAGC | 2 cut(s) | 372, 378 |
| LweI | GCATC | 3 cut(s) | 783, 1045, 1180 |
| MaeI | CTAG | 2 cut(s) | 747, 1071 |
| MaeIII | GTNAC | 5 cut(s) | 625, 718, 823, 1138, 1283 |
| MalI | GATC | 3 cut(s) | 924, 947, 1112 |
| MbiI | CCGCTC | 2 cut(s) | 114, 668 |
| MboI | GATC | 3 cut(s) | 922, 945, 1110 |
| MhlI | GDGCHC | 3 cut(s) | 71, 314, 1177 |
| MlyI | GAGTC | 2 cut(s) | 150, 180 |
| MmeI | TCCRAC | 2 cut(s) | 178, 1032 |
| MnlI | CCTC | 8 cut(s) | 88, 118, 232, 582, 601, 692, 991, 1068 |
| MroI | TCCGGA | 2 cut(s) | 550, 814 |
| MroXI | GAANNNNTTC | 1 cut(s) | 677 |
| MseI | TTAA | 7 cut(s) | 174, 485, 573, 705, 1157, 1197, 1235 |
| MspA1I | CMGCKG | 1 cut(s) | 385 |
| MspI | CCGG | 4 cut(s) | 551, 798, 815, 895 |
| MspR9I | CCNGG | 5 cut(s) | 328, 409, 798, 896, 901 |
| MvaI | CCWGG | 3 cut(s) | 328, 409, 901 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 269, 566, 1016, 1271 |
| NciI | CCSGG | 2 cut(s) | 798, 896 |
| NdeII | GATC | 3 cut(s) | 922, 945, 1110 |
| NlaIII | CATG | 3 cut(s) | 242, 544, 860 |
| NmuCI | GTSAC | 1 cut(s) | 625 |
| NspI | RCATGY | 1 cut(s) | 860 |
| NspV | TTCGAA | 1 cut(s) | 477 |
| PceI | AGGCCT | 1 cut(s) | 1078 |
| PciSI | GCTCTTC | 2 cut(s) | 76, 1060 |
| PdmI | GAANNNNTTC | 1 cut(s) | 677 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 296 |
| PkrI | GCNGC | 3 cut(s) | 368, 387, 390 |
| PleI | GAGTC | 2 cut(s) | 150, 180 |
| PpsI | GAGTC | 2 cut(s) | 150, 180 |
| PsiI | TTATAA | 2 cut(s) | 1041, 1206 |
| Psp124BI | GAGCTC | 1 cut(s) | 1177 |
| Psp6I | CCWGG | 3 cut(s) | 326, 407, 899 |
| PspEI | GGTNACC | 1 cut(s) | 1138 |
| PspFI | CCCAGC | 1 cut(s) | 362 |
| PspGI | CCWGG | 3 cut(s) | 326, 407, 899 |
| PspPI | GGNCC | 2 cut(s) | 897, 1161 |
| PvuII | CAGCTG | 1 cut(s) | 385 |
| RsaI | GTAC | 1 cut(s) | 413 |
| RsaNI | GTAC | 1 cut(s) | 412 |
| SacI | GAGCTC | 1 cut(s) | 1177 |
| SapI | GCTCTTC | 2 cut(s) | 76, 1060 |
| SaqAI | TTAA | 7 cut(s) | 174, 485, 573, 705, 1157, 1197, 1235 |
| SatI | GCNGC | 3 cut(s) | 367, 386, 389 |
| Sau3AI | GATC | 3 cut(s) | 922, 945, 1110 |
| Sau96I | GGNCC | 2 cut(s) | 897, 1161 |
| SchI | GAGTC | 2 cut(s) | 150, 180 |
| ScrFI | CCNGG | 5 cut(s) | 328, 409, 798, 896, 901 |
| SduI | GDGCHC | 3 cut(s) | 71, 314, 1177 |
| SfaNI | GCATC | 3 cut(s) | 783, 1045, 1180 |
| SfcI | CTRYAG | 2 cut(s) | 1011, 1180 |
| SfuI | TTCGAA | 1 cut(s) | 477 |
| SseBI | AGGCCT | 1 cut(s) | 1078 |
| SsiI | CCGC | 5 cut(s) | 91, 112, 388, 604, 668 |
| SspI | AATATT | 2 cut(s) | 304, 505 |
| SspMI | CTAG | 2 cut(s) | 747, 1071 |
| SstI | GAGCTC | 1 cut(s) | 1177 |
| StuI | AGGCCT | 1 cut(s) | 1078 |
| StyD4I | CCNGG | 5 cut(s) | 326, 407, 796, 894, 899 |
| StyI | CCWWGG | 1 cut(s) | 1079 |
| TaaI | ACNGT | 1 cut(s) | 1184 |
| TaqI | TCGA | 4 cut(s) | 338, 477, 681, 728 |
| TauI | GCSGC | 1 cut(s) | 391 |
| Tru1I | TTAA | 7 cut(s) | 174, 485, 573, 705, 1157, 1197, 1235 |
| Tru9I | TTAA | 7 cut(s) | 174, 485, 573, 705, 1157, 1197, 1235 |
| TscAI | CASTG | 2 cut(s) | 207, 1189 |
| TseFI | GTSAC | 1 cut(s) | 625 |
| TseI | GCWGC | 2 cut(s) | 366, 385 |
| Tsp45I | GTSAC | 1 cut(s) | 625 |
| TspDTI | ATGAA | 4 cut(s) | 16, 1019, 1229, 1334 |
| TspRI | CASTG | 2 cut(s) | 207, 1189 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 296 |
| XapI | RAATTY | 4 cut(s) | 322, 951, 970, 1095 |
| XceI | RCATGY | 1 cut(s) | 860 |
| XmnI | GAANNNNTTC | 1 cut(s) | 677 |
| XspI | CTAG | 2 cut(s) | 747, 1071 |