Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001605

Physical Location & Seq

Genomic Coordinates Forward (+)

2578756 .. 2579448

Gene Structure 693 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g02910.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGCCTATTACCCCCCTCTAGGACCTTTATACTATGAGCCATGGGTGGTAGAAATTGGTCCTCTCCATCATGATAAACCAACGTGTCATCCGGCAGAGAAGTTCAAGCTTGAACTGGCAGCAAAGTATATCGAAGACAGTGGCTGTCCAGATGAAGATTTGCAGAAGATCATTGAGGACAACATCAACACACTAAGGGAGTGCTATGAGGAGGAAGCAACAAGGTCGTACACCAACGAGGCCCTCGCAGACTTGTTATTCTTAGATGGGTGTTCAACCTTACAGTTCATATACTCTTTTATACATAACATGTTGGCAGATTTCAACTTCAAGAGGGATCAGGCGGCTTTTGCACATCATGATTTTTTCTTGCTAGAAAATCAACTCCCTTACCGAGTCCTCAAGCTGTTGATGTCCAGAAGTTGCAAAAGGGAAGAGTTGAAAAACGCAATCCATGAGTTTGTTGGAGACATCATCATGGTAGCAAGAGCCAGAAGAAAACAGAAAAAAAGAACACGTCAACCAGAAGATACATGCATAAAAATAACAGAGATTGAAGAGCCTGCTCATCTTCTCGATCTTCTCCGGAGAGAAATGCTAGCCCCCCCCCAGATGGCCACAAAATATATGGAAATCTGCGATGGCGACAGTTCCGCAACATACAACAGCTTACAGCAACATGGGTCCGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

231

Amino Acids

26.75

Weight (kDa)

5.4

Isoelectric Point (pI)

65.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF247	PF03140	11 - 207	1.7e-32	Plant protein of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001605)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02910 FvH4_6g25140
malus_domestica	MD00G1049100.v1.1 MD02G1233700.v1.1 MD07G1070100.v1.1 MD12G1022100.v1.1
prunus_persica	Prupe.7G045600_v2.0.a1 Prupe.7G045700_v2.0.a1 Prupe.7G045800_v2.0.a1 Prupe.7G046000_v2.0.a1 Prupe.8G075900_v2.0.a1 Prupe.8G076000_v2.0.a1
pyrus_communis	pycom12g02050 pycom12g07700 pycom12g07720 pycom14g07350 pycom14g07360
rosa_chinensis	RchiOBHm_Chr2g0125011
rosa_laevigata	RLG00000009906 RLG00000018842
rosa_multiflora	Rmu_sc0000796.1_g000003 Rmu_sc0000796.1_g000022 Rmu_sc0000796.1_g000026 Rmu_sc0001251.1_g000010 Rmu_sc0001251.1_g000012 Rmu_sc0010311.1_g000001 Rmu_sc0010311.1_g000003 Rmu_sc0010311.1_g000008 Rmu_sc0010311.1_g000010
rosa_roxburghii	Rroxscaffold_2G00118310 Rroxscaffold_2G00118330 Rroxscaffold_2G00118420 Rroxscaffold_2G00118460 Rroxscaffold_2G00118760
rosa_rugosa	Rorug02G0254900
rosa_samantha	Rh2AG313200 Rh2AG313500 Rh2BG321400 Rh2BG321800 Rh2CG303200 Rh2CG303500 Rh2CG303900 Rh2CG304000 Rh2DG339200 Rh2DG339500 Rh2DG340000 Rh2DG340100
rosa_wichuraiana	Rw2G025320 Rw2G025330 Rw2G025360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	585
AciI	CCGC	2 cut(s)	344, 654
AclWI	GGATC	1 cut(s)	345
AcoI	YGGCCR	1 cut(s)	615
AfaI	GTAC	1 cut(s)	230
AfiI	CCNNNNNNNGG	2 cut(s)	20, 613
AflIII	ACRYGT	3 cut(s)	83, 309, 515
AgsI	TTSAA	7 cut(s)	106, 113, 276, 325, 331, 442, 557
AjiI	CACGTC	1 cut(s)	518
AluBI	AGCT	3 cut(s)	109, 406, 669
AluI	AGCT	3 cut(s)	109, 406, 669
Alw26I	GTCTC	1 cut(s)	462
AlwI	GGATC	1 cut(s)	345
AlwNI	CAGNNNCTG	1 cut(s)	144
Aor13HI	TCCGGA	1 cut(s)	585
AoxI	GGCC	3 cut(s)	3, 240, 615
ApeKI	GCWGC	1 cut(s)	119
AspS9I	GGNCC	4 cut(s)	23, 59, 241, 684
AsuNHI	GCTAGC	1 cut(s)	598
AvaII	GGWCC	3 cut(s)	23, 59, 684
BalI	TGGCCA	1 cut(s)	617
BbsI	GAAGAC	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	131
BccI	CCATC	4 cut(s)	75, 260, 607, 635
BcgI	CGANNNNNNTGC	2 cut(s)	207, 241
BcoDI	GTCTC	1 cut(s)	462
BfaI	CTAG	3 cut(s)	20, 374, 599
BisI	GCNGC	2 cut(s)	120, 345
BlsI	GCNGC	2 cut(s)	121, 346
Bme18I	GGWCC	3 cut(s)	23, 59, 684
BmgBI	CACGTC	1 cut(s)	518
BmgT120I	GGNCC	4 cut(s)	23, 59, 241, 684
BmiI	GGNNCC	1 cut(s)	685
BmtI	GCTAGC	1 cut(s)	602
BpiI	GAAGAC	1 cut(s)	141
BpuEI	CTTGAG	1 cut(s)	386
BsaJI	CCNNGG	1 cut(s)	41
BsaWI	WCCGGW	1 cut(s)	585
Bsc4I	CCNNNNNNNGG	2 cut(s)	20, 613
Bse1I	ACTGG	1 cut(s)	120
BseAI	TCCGGA	1 cut(s)	585
BseDI	CCNNGG	1 cut(s)	41
BseGI	GGATG	1 cut(s)	88
BseLI	CCNNNNNNNGG	2 cut(s)	20, 613
BseNI	ACTGG	1 cut(s)	120
BseRI	GAGGAG	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	131
BshFI	GGCC	3 cut(s)	5, 242, 617
BsiSI	CCGG	2 cut(s)	92, 586
BslI	CCNNNNNNNGG	2 cut(s)	20, 613
BsmAI	GTCTC	1 cut(s)	462
BsnI	GGCC	3 cut(s)	5, 242, 617
Bsp13I	TCCGGA	1 cut(s)	585
Bsp143I	GATC	3 cut(s)	168, 337, 577
Bsp19I	CCATGG	1 cut(s)	41
BspACI	CCGC	2 cut(s)	344, 654
BspANI	GGCC	3 cut(s)	5, 242, 617
BspEI	TCCGGA	1 cut(s)	585
BspHI	TCATGA	2 cut(s)	70, 358
BspLI	GGNNCC	1 cut(s)	685
BspOI	GCTAGC	1 cut(s)	602
BspPI	GGATC	1 cut(s)	345
BspQI	GCTCTTC	1 cut(s)	552
BsrI	ACTGG	1 cut(s)	120
BssECI	CCNNGG	1 cut(s)	41
BssMI	GATC	3 cut(s)	168, 337, 577
BssT1I	CCWWGG	1 cut(s)	41
Bst4CI	ACNGT	3 cut(s)	140, 285, 650
Bst6I	CTCTTC	2 cut(s)	429, 552
BstC8I	GCNNGC	2 cut(s)	564, 600
BstDEI	CTNAG	2 cut(s)	194, 262
BstDSI	CCRYGG	1 cut(s)	41
BstF5I	GGATG	1 cut(s)	88
BstKTI	GATC	3 cut(s)	171, 340, 580
BstMAI	GTCTC	1 cut(s)	462
BstMBI	GATC	3 cut(s)	168, 337, 577
BstMWI	GCNNNNNNNGC	1 cut(s)	350
BstNSI	RCATGY	2 cut(s)	313, 537
BstV1I	GCAGC	1 cut(s)	131
BstV2I	GAAGAC	1 cut(s)	141
BsuRI	GGCC	3 cut(s)	5, 242, 617
BtgI	CCRYGG	1 cut(s)	41
BtgZI	GCGATG	1 cut(s)	654
BtrI	CACGTC	1 cut(s)	518
BtsCI	GGATG	1 cut(s)	88
BtsIMutI	CAGTG	1 cut(s)	145
Cac8I	GCNNGC	2 cut(s)	564, 600
CaiI	CAGNNNCTG	1 cut(s)	144
CciI	TCATGA	2 cut(s)	70, 358
Cfr13I	GGNCC	4 cut(s)	23, 59, 241, 684
Csp6I	GTAC	1 cut(s)	229
CviAII	CATG	8 cut(s)	42, 71, 310, 359, 455, 478, 534, 680
CviQI	GTAC	1 cut(s)	229
DdeI	CTNAG	2 cut(s)	194, 262
DpnI	GATC	3 cut(s)	170, 339, 579
DpnII	GATC	3 cut(s)	168, 337, 577
EaeI	YGGCCR	1 cut(s)	615
Eam1104I	CTCTTC	2 cut(s)	429, 552
EarI	CTCTTC	2 cut(s)	429, 552
Eco130I	CCWWGG	1 cut(s)	41
Eco47I	GGWCC	3 cut(s)	23, 59, 684
EcoO109I	RGGNCCY	2 cut(s)	23, 241
EcoT14I	CCWWGG	1 cut(s)	41
EcoT22I	ATGCAT	1 cut(s)	539
ErhI	CCWWGG	1 cut(s)	41
FaeI	CATG	8 cut(s)	45, 74, 313, 362, 458, 481, 537, 683
FatI	CATG	8 cut(s)	41, 70, 309, 358, 454, 477, 533, 679
Fnu4HI	GCNGC	2 cut(s)	120, 345
FokI	GGATG	1 cut(s)	75
Fsp4HI	GCNGC	2 cut(s)	120, 345
FspBI	CTAG	3 cut(s)	20, 374, 599
GluI	GCNGC	2 cut(s)	120, 345
HaeIII	GGCC	3 cut(s)	5, 242, 617
HapII	CCGG	2 cut(s)	92, 586
Hin1II	CATG	8 cut(s)	45, 74, 313, 362, 458, 481, 537, 683
HincII	GTYRAC	1 cut(s)	521
HindII	GTYRAC	1 cut(s)	521
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	1 cut(s)	396
HpaII	CCGG	2 cut(s)	92, 586
Hpy166II	GTNNAC	2 cut(s)	231, 521
Hpy188III	TCNNGA	7 cut(s)	71, 149, 331, 359, 417, 575, 586
Hpy8I	GTNNAC	2 cut(s)	231, 521
HpyCH4III	ACNGT	3 cut(s)	140, 285, 650
HpyCH4IV	ACGT	2 cut(s)	83, 517
HpyCH4V	TGCA	4 cut(s)	163, 353, 426, 537
HpyF10VI	GCNNNNNNNGC	1 cut(s)	350
HpyF3I	CTNAG	2 cut(s)	194, 262
HpySE526I	ACGT	2 cut(s)	83, 517
Hsp92II	CATG	8 cut(s)	45, 74, 313, 362, 458, 481, 537, 683
Kpn2I	TCCGGA	1 cut(s)	585
Kzo9I	GATC	3 cut(s)	168, 337, 577
LguI	GCTCTTC	1 cut(s)	552
Lsp1109I	GCAGC	1 cut(s)	131
MaeI	CTAG	3 cut(s)	20, 374, 599
MaeII	ACGT	2 cut(s)	83, 517
MalI	GATC	3 cut(s)	170, 339, 579
MboI	GATC	3 cut(s)	168, 337, 577
MboII	GAAGA	9 cut(s)	146, 167, 178, 446, 507, 539, 563, 569, 572
MlsI	TGGCCA	1 cut(s)	617
MluCI	AATT	1 cut(s)	54
MluNI	TGGCCA	1 cut(s)	617
MlyI	GAGTC	1 cut(s)	405
MmeI	TCCRAC	1 cut(s)	445
MnlI	CCTC	9 cut(s)	27, 72, 169, 202, 205, 232, 254, 327, 410
Mox20I	TGGCCA	1 cut(s)	617
Mph1103I	ATGCAT	1 cut(s)	539
MroI	TCCGGA	1 cut(s)	585
MscI	TGGCCA	1 cut(s)	617
MseI	TTAA	1 cut(s)	691
MslI	CAYNNNNRTG	1 cut(s)	476
Msp20I	TGGCCA	1 cut(s)	617
MspI	CCGG	2 cut(s)	92, 586
MwoI	GCNNNNNNNGC	1 cut(s)	350
NcoI	CCATGG	1 cut(s)	41
NdeII	GATC	3 cut(s)	168, 337, 577
NheI	GCTAGC	1 cut(s)	598
NlaIII	CATG	8 cut(s)	45, 74, 313, 362, 458, 481, 537, 683
NlaIV	GGNNCC	1 cut(s)	685
NsiI	ATGCAT	1 cut(s)	539
NspI	RCATGY	2 cut(s)	313, 537
PagI	TCATGA	2 cut(s)	70, 358
PciI	ACATGT	1 cut(s)	309
PciSI	GCTCTTC	1 cut(s)	552
PkrI	GCNGC	2 cut(s)	121, 346
PleI	GAGTC	1 cut(s)	404
PpsI	GAGTC	1 cut(s)	404
PpuMI	RGGWCCY	1 cut(s)	23
PscI	ACATGT	1 cut(s)	309
Psp5II	RGGWCCY	1 cut(s)	23
PspN4I	GGNNCC	1 cut(s)	685
PspPI	GGNCC	4 cut(s)	23, 59, 241, 684
PspPPI	RGGWCCY	1 cut(s)	23
PstNI	CAGNNNCTG	1 cut(s)	144
RsaI	GTAC	1 cut(s)	230
RsaNI	GTAC	1 cut(s)	229
RseI	CAYNNNNRTG	1 cut(s)	476
SapI	GCTCTTC	1 cut(s)	552
SaqAI	TTAA	1 cut(s)	691
SatI	GCNGC	2 cut(s)	120, 345
Sau3AI	GATC	3 cut(s)	168, 337, 577
Sau96I	GGNCC	4 cut(s)	23, 59, 241, 684
SchI	GAGTC	1 cut(s)	405
SetI	ASST	8 cut(s)	28, 86, 111, 227, 281, 408, 520, 671
SinI	GGWCC	3 cut(s)	23, 59, 684
SmiMI	CAYNNNNRTG	1 cut(s)	476
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
Sse9I	AATT	1 cut(s)	54
SsiI	CCGC	2 cut(s)	344, 654
SspMI	CTAG	3 cut(s)	20, 374, 599
StyI	CCWWGG	1 cut(s)	41
TaaI	ACNGT	3 cut(s)	140, 285, 650
TaiI	ACGT	2 cut(s)	86, 520
TaqI	TCGA	2 cut(s)	132, 576
TasI	AATT	1 cut(s)	54
TauI	GCSGC	1 cut(s)	347
Tru1I	TTAA	1 cut(s)	691
Tru9I	TTAA	1 cut(s)	691
TscAI	CASTG	1 cut(s)	145
TseI	GCWGC	1 cut(s)	119
TspDTI	ATGAA	2 cut(s)	168, 277
TspGWI	ACGGA	1 cut(s)	676
TspRI	CASTG	1 cut(s)	145
VpaK11BI	GGWCC	3 cut(s)	23, 59, 684
XceI	RCATGY	2 cut(s)	313, 537
XcmI	CCANNNNNNNNNTGG	2 cut(s)	461, 625
XspI	CTAG	3 cut(s)	20, 374, 599
Zsp2I	ATGCAT	1 cut(s)	539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.