RLG00000009906

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001605
Physical Location & Seq
Reverse (-)
59931748 .. 59933287
1540 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009906

Sequence Viewer

Length: 1266 bp
ATGCTCCGAGATCACGTAAATTTCGAGAAAAACTATGAGCCAAGGGTAATAGCAATTGGTCCTTTCCATCATGATAACCCAAGGTATCAGCTGGCAGAGAAGTTCAAGCATGCACTGGCAGCAAAATTTATCGAAGACAGTCTCTGTCAAGCTGTAGATTTGCACAAGATCATTGAGGACAACATCAACACACTAAAGGACCGCTATGATGAGGAAGCAACAAGGTACTACAATGACGAGGCCCTCACAGACTTGTTTTTCTTGGATGGGTGTGCAACCTTAGGGTTCATATACGAGTTTATGCATTATGGGTTGGCAAATTTCCAGATCAAGAGGGATCAGGTGGTTTTGGCAGAGCATGATTTTTTCTTGCTAGAAAACCAACTCCCTTACCAAGTCCTCAAGCTGTTGATGAGCAAAAGTGACAAAAATTATGAGTTGAAGATCGCAATCGATGATTTTGTTGGAAGGAACATCATGTTAGCTGGTCACATTACTCACATATACAAAAGAAGACGTCAACAAAGAGATACATTCGCCATGGGACCTGAGCCCACTCATCTTCTTGAGCTTCTCCGGACAGAAATGCTAGGTCGACCCCAAATACCTTACGACAGGAAAAAATCAAAAGATCACCACCGACCATTGTTCCGCAACATAGAGGAGCTCAAAGCTGGAGGGATCCAGTTAAAGCCTAGTAAGAAAAGCTTCTTGATGGACATAAGTTTTACTTCTGTAGGCTCTCGAGGAGTCCTATGTCTTCCACAAATATCAGTAGACGGCGCCATGGGGCCTAAGTTCTTGAATTTGATAGCCTATGAAATGTGTCCTGATTTCCAAAATGACTTTGTGGTCACCTCTTACATATACTTCCTGCACACACTGGTTAATAATGCAGATGATGTTAAACAGCTAAGGTCGGCATGCGTACTATTCAACAGACTTGGGAGTGATAAAGAGGTGGCTCAACTTTTCAATGAGATAGGCACTGACTTAGTGCCTAACAGTGAAATATACGGCAGTGTCAATATCAAAATAGAAAAGCACTACAAAACCAAGTGGGAAACCAAGTTGTCAACATGGATGGTTCAATTCAGTCGCGATTATGTCAGTAGCCCCTGGACCATCCTGGCTTCGCTTGGTGTTCTAGCAGCTCTGGGGTTAAGCGGCATCCAGACTTGGTACACAATCAATCCTCCCGTTCCTCCGTCCAGTGCCTGTGATGCAGTATGTGAATTCATCAAGAAACAGCTAAAAATAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

422

Amino Acids

48.53

Weight (kDa)

6.54

Isoelectric Point (pI)

43.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 8 - 386 3.5e-76 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 851
AatII GACGTC 1 cut(s) 520
AccB1I GGYRCC 1 cut(s) 782
AccI GTMKAC 2 cut(s) 595, 777
AccII CGCG 1 cut(s) 1101
AccIII TCCGGA 1 cut(s) 576
AciI CCGC 3 cut(s) 202, 652, 1167
AclWI GGATC 3 cut(s) 345, 676, 689
AcsI RAATTY 5 cut(s) 19, 125, 319, 805, 1235
AcyI GRCGYC 2 cut(s) 517, 783
AfaI GTAC 3 cut(s) 227, 930, 1184
AgsI TTSAA 6 cut(s) 106, 442, 805, 937, 976, 1091
AjnI CCWGG 2 cut(s) 1118, 1128
Alw21I GWGCWC 1 cut(s) 669
Alw26I GTCTC 1 cut(s) 146
AlwI GGATC 3 cut(s) 345, 676, 689
AlwNI CAGNNNCTG 2 cut(s) 144, 1218
Ama87I CYCGRG 1 cut(s) 744
Aor13HI TCCGGA 1 cut(s) 576
AoxI GGCC 2 cut(s) 240, 791
ApeKI GCWGC 2 cut(s) 119, 1151
ApoI RAATTY 5 cut(s) 19, 125, 319, 805, 1235
Asp700I GAANNNNTTC 1 cut(s) 707
AspLEI GCGC 1 cut(s) 785
AspS9I GGNCC 6 cut(s) 59, 199, 241, 545, 791, 1122
AsuHPI GGTGA 2 cut(s) 626, 847
AvaI CYCGRG 1 cut(s) 744
AvaII GGWCC 4 cut(s) 59, 199, 545, 1122
AxyI CCTNAGG 1 cut(s) 280
BamHI GGATCC 1 cut(s) 681
BanI GGYRCC 1 cut(s) 782
BanII GRGCYC 2 cut(s) 555, 669
BbsI GAAGAC 3 cut(s) 141, 520, 752
Bbv12I GWGCWC 1 cut(s) 669
BbvI GCAGC 2 cut(s) 131, 1163
BccI CCATC 5 cut(s) 75, 260, 709, 1078, 1133
BceAI ACGGC 2 cut(s) 796, 1033
BciT130I CCWGG 2 cut(s) 1120, 1130
BcoDI GTCTC 1 cut(s) 146
BfaI CTAG 4 cut(s) 374, 590, 696, 1148
BfmI CTRYAG 2 cut(s) 153, 735
BfoI RGCGCY 1 cut(s) 786
BisI GCNGC 3 cut(s) 120, 1152, 1168
BlsI GCNGC 3 cut(s) 121, 1153, 1169
Bme1390I CCNGG 2 cut(s) 1120, 1130
Bme18I GGWCC 4 cut(s) 59, 199, 545, 1122
BmeT110I CYCGRG 1 cut(s) 744
BmgT120I GGNCC 6 cut(s) 59, 199, 241, 545, 791, 1122
BmiI GGNNCC 4 cut(s) 546, 683, 784, 792
BmrFI CCNGG 2 cut(s) 1120, 1130
BmsI GCATC 2 cut(s) 1179, 1213
BpiI GAAGAC 3 cut(s) 141, 520, 752
BpmI CTGGAG 1 cut(s) 696
Bpu10I CCTNAGC 2 cut(s) 549, 914
BpuEI CTTGAG 2 cut(s) 386, 587
Bsa29I ATCGAT 1 cut(s) 453
BsaAI YACGTR 1 cut(s) 16
BsaBI GATNNNNATC 1 cut(s) 449
BsaHI GRCGYC 2 cut(s) 517, 783
BsaJI CCNNGG 5 cut(s) 41, 80, 540, 786, 1118
BsaWI WCCGGW 1 cut(s) 576
Bse1I ACTGG 4 cut(s) 120, 685, 888, 1212
Bse21I CCTNAGG 1 cut(s) 280
Bse8I GATNNNNATC 1 cut(s) 449
BseAI TCCGGA 1 cut(s) 576
BseBI CCWGG 2 cut(s) 1120, 1130
BseCI ATCGAT 1 cut(s) 453
BseDI CCNNGG 5 cut(s) 41, 80, 540, 786, 1118
BseGI GGATG 4 cut(s) 271, 1089, 1125, 1170
BseJI GATNNNNATC 1 cut(s) 449
BseMII CTCAG 1 cut(s) 540
BseNI ACTGG 4 cut(s) 120, 685, 888, 1212
BseRI GAGGAG 2 cut(s) 677, 762
BseXI GCAGC 2 cut(s) 131, 1163
BsgI GTGCAG 1 cut(s) 860
Bsh1236I CGCG 1 cut(s) 1101
BshFI GGCC 2 cut(s) 242, 793
BshNI GGYRCC 1 cut(s) 782
BshVI ATCGAT 1 cut(s) 453
BsiHKAI GWGCWC 1 cut(s) 669
BsiHKCI CYCGRG 1 cut(s) 744
BsiSI CCGG 1 cut(s) 577
BslFI GGGAC 1 cut(s) 558
BsmAI GTCTC 1 cut(s) 146
BsmFI GGGAC 1 cut(s) 558
BsnI GGCC 2 cut(s) 242, 793
BsoBI CYCGRG 1 cut(s) 744
Bsp1286I GDGCHC 2 cut(s) 555, 669
Bsp13I TCCGGA 1 cut(s) 576
Bsp143I GATC 7 cut(s) 10, 168, 327, 337, 444, 631, 681
Bsp19I CCATGG 2 cut(s) 540, 786
Bsp68I TCGCGA 1 cut(s) 1101
BspACI CCGC 3 cut(s) 202, 652, 1167
BspANI GGCC 2 cut(s) 242, 793
BspCNI CTCAG 1 cut(s) 541
BspDI ATCGAT 1 cut(s) 453
BspEI TCCGGA 1 cut(s) 576
BspFNI CGCG 1 cut(s) 1101
BspHI TCATGA 1 cut(s) 70
BspLI GGNNCC 4 cut(s) 546, 683, 784, 792
BspPI GGATC 3 cut(s) 345, 676, 689
BspT107I GGYRCC 1 cut(s) 782
BsrI ACTGG 4 cut(s) 120, 685, 888, 1212
BssECI CCNNGG 5 cut(s) 41, 80, 540, 786, 1118
BssMI GATC 7 cut(s) 10, 168, 327, 337, 444, 631, 681
BssNI GRCGYC 2 cut(s) 517, 783
BssT1I CCWWGG 4 cut(s) 41, 80, 540, 786
Bst2UI CCWGG 2 cut(s) 1120, 1130
Bst4CI ACNGT 2 cut(s) 140, 1007
BstACI GRCGYC 2 cut(s) 517, 783
BstBAI YACGTR 1 cut(s) 16
BstC8I GCNNGC 3 cut(s) 93, 111, 925
BstDEI CTNAG 5 cut(s) 280, 549, 795, 914, 994
BstDSI CCRYGG 2 cut(s) 540, 786
BstEII GGTNACC 1 cut(s) 853
BstF5I GGATG 4 cut(s) 271, 1089, 1125, 1170
BstFNI CGCG 1 cut(s) 1101
BstH2I RGCGCY 1 cut(s) 786
BstHHI GCGC 1 cut(s) 785
BstKTI GATC 7 cut(s) 13, 171, 330, 340, 447, 634, 684
BstMAI GTCTC 1 cut(s) 146
BstMBI GATC 7 cut(s) 10, 168, 327, 337, 444, 631, 681
BstMWI GCNNNNNNNGC 2 cut(s) 119, 1223
BstNI CCWGG 2 cut(s) 1120, 1130
BstNSI RCATGY 2 cut(s) 113, 927
BstPI GGTNACC 1 cut(s) 853
BstSCI CCNGG 2 cut(s) 1118, 1128
BstSFI CTRYAG 2 cut(s) 153, 735
BstUI CGCG 1 cut(s) 1101
BstV1I GCAGC 2 cut(s) 131, 1163
BstV2I GAAGAC 3 cut(s) 141, 520, 752
BstX2I RGATCY 1 cut(s) 681
BstYI RGATCY 1 cut(s) 681
Bsu15I ATCGAT 1 cut(s) 453
Bsu36I CCTNAGG 1 cut(s) 280
BsuRI GGCC 2 cut(s) 242, 793
BsuTUI ATCGAT 1 cut(s) 453
BtgI CCRYGG 2 cut(s) 540, 786
BtsCI GGATG 4 cut(s) 271, 1089, 1125, 1170
BtsI GCAGTG 1 cut(s) 1027
BtsIMutI CAGTG 6 cut(s) 113, 881, 987, 1012, 1027, 1219
BtuMI TCGCGA 1 cut(s) 1101
Cac8I GCNNGC 3 cut(s) 93, 111, 925
CaiI CAGNNNCTG 2 cut(s) 144, 1218
CciI TCATGA 1 cut(s) 70
CfoI GCGC 1 cut(s) 785
Cfr13I GGNCC 6 cut(s) 59, 199, 241, 545, 791, 1122
ClaI ATCGAT 1 cut(s) 453
Csp6I GTAC 3 cut(s) 226, 929, 1183
CviAII CATG 8 cut(s) 71, 110, 359, 478, 541, 787, 924, 1080
CviQI GTAC 3 cut(s) 226, 929, 1183
DdeI CTNAG 5 cut(s) 280, 549, 795, 914, 994
DinI GGCGCC 1 cut(s) 784
DpnI GATC 7 cut(s) 12, 170, 329, 339, 446, 633, 683
DpnII GATC 7 cut(s) 10, 168, 327, 337, 444, 631, 681
DrdI GACNNNNNNGTC 1 cut(s) 851
DseDI GACNNNNNNGTC 1 cut(s) 851
Ecl136II GAGCTC 1 cut(s) 667
Eco130I CCWWGG 4 cut(s) 41, 80, 540, 786
Eco24I GRGCYC 2 cut(s) 555, 669
Eco47I GGWCC 4 cut(s) 59, 199, 545, 1122
Eco53kI GAGCTC 1 cut(s) 667
Eco81I CCTNAGG 1 cut(s) 280
Eco88I CYCGRG 1 cut(s) 744
Eco91I GGTNACC 1 cut(s) 853
EcoICRI GAGCTC 1 cut(s) 667
EcoO109I RGGNCCY 3 cut(s) 241, 545, 791
EcoO65I GGTNACC 1 cut(s) 853
EcoRI GAATTC 1 cut(s) 1235
EcoRII CCWGG 2 cut(s) 1118, 1128
EcoT14I CCWWGG 4 cut(s) 41, 80, 540, 786
EcoT22I ATGCAT 1 cut(s) 306
EcoT38I GRGCYC 2 cut(s) 555, 669
EgeI GGCGCC 1 cut(s) 784
EheI GGCGCC 1 cut(s) 784
ErhI CCWWGG 4 cut(s) 41, 80, 540, 786
FaeI CATG 8 cut(s) 74, 113, 362, 481, 544, 790, 927, 1083
FalI AAGNNNNNCTT 4 cut(s) 692, 724, 715, 747
FaqI GGGAC 1 cut(s) 558
FatI CATG 8 cut(s) 70, 109, 358, 477, 540, 786, 923, 1079
FblI GTMKAC 2 cut(s) 595, 777
Fnu4HI GCNGC 3 cut(s) 120, 1152, 1168
FokI GGATG 4 cut(s) 278, 1096, 1112, 1157
FriOI GRGCYC 2 cut(s) 555, 669
Fsp4HI GCNGC 3 cut(s) 120, 1152, 1168
FspBI CTAG 4 cut(s) 374, 590, 696, 1148
GlaI GCGC 1 cut(s) 784
GluI GCNGC 3 cut(s) 120, 1152, 1168
GsuI CTGGAG 1 cut(s) 696
HaeII RGCGCY 1 cut(s) 786
HaeIII GGCC 2 cut(s) 242, 793
HapII CCGG 1 cut(s) 577
HhaI GCGC 1 cut(s) 785
Hin1I GRCGYC 2 cut(s) 517, 783
Hin1II CATG 8 cut(s) 74, 113, 362, 481, 544, 790, 927, 1083
Hin6I GCGC 1 cut(s) 783
HinP1I GCGC 1 cut(s) 783
HincII GTYRAC 3 cut(s) 521, 596, 1077
HindII GTYRAC 3 cut(s) 521, 596, 1077
HindIII AAGCTT 1 cut(s) 706
HinfI GANTC 1 cut(s) 750
HpaII CCGG 1 cut(s) 577
HphI GGTGA 2 cut(s) 626, 847
Hpy166II GTNNAC 5 cut(s) 521, 596, 778, 1077, 1185
Hpy188I TCNGA 1 cut(s) 8
Hpy8I GTNNAC 5 cut(s) 521, 596, 778, 1077, 1185
HpyAV CCTTC 1 cut(s) 462
HpyCH4III ACNGT 2 cut(s) 140, 1007
HpyCH4IV ACGT 2 cut(s) 15, 517
HpyCH4V TGCA 7 cut(s) 113, 163, 275, 304, 877, 896, 1226
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 1223
HpyF3I CTNAG 5 cut(s) 280, 549, 795, 914, 994
HpySE526I ACGT 2 cut(s) 15, 517
Hsp92I GRCGYC 2 cut(s) 517, 783
Hsp92II CATG 8 cut(s) 74, 113, 362, 481, 544, 790, 927, 1083
HspAI GCGC 1 cut(s) 783
KasI GGCGCC 1 cut(s) 782
Kpn2I TCCGGA 1 cut(s) 576
Kzo9I GATC 7 cut(s) 10, 168, 327, 337, 444, 631, 681
LmnI GCTCC 2 cut(s) 9, 664
Lsp1109I GCAGC 2 cut(s) 131, 1163
LweI GCATC 2 cut(s) 1179, 1213
MaeI CTAG 4 cut(s) 374, 590, 696, 1148
MaeII ACGT 2 cut(s) 15, 517
MaeIII GTNAC 3 cut(s) 422, 488, 853
MalI GATC 7 cut(s) 12, 170, 329, 339, 446, 633, 683
MboI GATC 7 cut(s) 10, 168, 327, 337, 444, 631, 681
MboII GAAGA 5 cut(s) 146, 454, 525, 554, 752
MfeI CAATTG 1 cut(s) 54
MflI RGATCY 1 cut(s) 681
MhlI GDGCHC 2 cut(s) 555, 669
MluCI AATT 8 cut(s) 19, 54, 125, 319, 430, 805, 1091, 1235
Mly113I GGCGCC 1 cut(s) 783
MlyI GAGTC 1 cut(s) 759
MmeI TCCRAC 1 cut(s) 445
Mph1103I ATGCAT 1 cut(s) 306
MroI TCCGGA 1 cut(s) 576
MroXI GAANNNNTTC 1 cut(s) 707
MseI TTAA 4 cut(s) 689, 888, 906, 1163
MspA1I CMGCKG 1 cut(s) 91
MspI CCGG 1 cut(s) 577
MspR9I CCNGG 2 cut(s) 1120, 1130
MunI CAATTG 1 cut(s) 54
MvaI CCWGG 2 cut(s) 1120, 1130
MvnI CGCG 1 cut(s) 1101
MwoI GCNNNNNNNGC 2 cut(s) 119, 1223
NarI GGCGCC 1 cut(s) 783
NcoI CCATGG 2 cut(s) 540, 786
NdeII GATC 7 cut(s) 10, 168, 327, 337, 444, 631, 681
NlaIII CATG 8 cut(s) 74, 113, 362, 481, 544, 790, 927, 1083
NlaIV GGNNCC 4 cut(s) 546, 683, 784, 792
NmuCI GTSAC 3 cut(s) 422, 488, 853
NruI TCGCGA 1 cut(s) 1101
NsiI ATGCAT 1 cut(s) 306
NspI RCATGY 2 cut(s) 113, 927
PaeI GCATGC 2 cut(s) 113, 927
PaeR7I CTCGAG 1 cut(s) 744
PagI TCATGA 1 cut(s) 70
PcsI WCGNNNNNNNCGW 1 cut(s) 21
PdmI GAANNNNTTC 1 cut(s) 707
PkrI GCNGC 3 cut(s) 121, 1153, 1169
PleI GAGTC 1 cut(s) 758
PluTI GGCGCC 1 cut(s) 786
PpsI GAGTC 1 cut(s) 758
Ppu21I YACGTR 1 cut(s) 16
PpuMI RGGWCCY 1 cut(s) 545
Psp124BI GAGCTC 1 cut(s) 669
Psp5II RGGWCCY 1 cut(s) 545
Psp6I CCWGG 2 cut(s) 1118, 1128
PspEI GGTNACC 1 cut(s) 853
PspGI CCWGG 2 cut(s) 1118, 1128
PspN4I GGNNCC 4 cut(s) 546, 683, 784, 792
PspPI GGNCC 6 cut(s) 59, 199, 241, 545, 791, 1122
PspPPI RGGWCCY 1 cut(s) 545
PstNI CAGNNNCTG 2 cut(s) 144, 1218
PsuI RGATCY 1 cut(s) 681
PvuII CAGCTG 1 cut(s) 91
RruI TCGCGA 1 cut(s) 1101
RsaI GTAC 3 cut(s) 227, 930, 1184
RsaNI GTAC 3 cut(s) 226, 929, 1183
SacI GAGCTC 1 cut(s) 669
SalI GTCGAC 1 cut(s) 594
SaqAI TTAA 4 cut(s) 689, 888, 906, 1163
SatI GCNGC 3 cut(s) 120, 1152, 1168
Sau3AI GATC 7 cut(s) 10, 168, 327, 337, 444, 631, 681
Sau96I GGNCC 6 cut(s) 59, 199, 241, 545, 791, 1122
SchI GAGTC 1 cut(s) 759
ScrFI CCNGG 2 cut(s) 1120, 1130
SduI GDGCHC 2 cut(s) 555, 669
SfaNI GCATC 2 cut(s) 1179, 1213
SfcI CTRYAG 2 cut(s) 153, 735
SfoI GGCGCC 1 cut(s) 784
Sfr274I CTCGAG 1 cut(s) 744
SinI GGWCC 4 cut(s) 59, 199, 545, 1122
SlaI CTCGAG 1 cut(s) 744
SmlI CTYRAG 3 cut(s) 401, 566, 744
SmoI CTYRAG 3 cut(s) 401, 566, 744
SphI GCATGC 2 cut(s) 113, 927
Sse9I AATT 8 cut(s) 19, 54, 125, 319, 430, 805, 1091, 1235
SsiI CCGC 3 cut(s) 202, 652, 1167
SspDI GGCGCC 1 cut(s) 782
SspMI CTAG 4 cut(s) 374, 590, 696, 1148
SstI GAGCTC 1 cut(s) 669
StyD4I CCNGG 2 cut(s) 1118, 1128
StyI CCWWGG 4 cut(s) 41, 80, 540, 786
TaaI ACNGT 2 cut(s) 140, 1007
TaiI ACGT 2 cut(s) 18, 520
TaqI TCGA 5 cut(s) 24, 132, 453, 595, 745
TasI AATT 8 cut(s) 19, 54, 125, 319, 430, 805, 1091, 1235
TauI GCSGC 1 cut(s) 1170
Tru1I TTAA 4 cut(s) 689, 888, 906, 1163
Tru9I TTAA 4 cut(s) 689, 888, 906, 1163
TscAI CASTG 6 cut(s) 120, 888, 994, 1012, 1027, 1219
TseFI GTSAC 3 cut(s) 422, 488, 853
TseI GCWGC 2 cut(s) 119, 1151
Tsp45I GTSAC 3 cut(s) 422, 488, 853
TspDTI ATGAA 3 cut(s) 277, 834, 1228
TspGWI ACGGA 1 cut(s) 1197
TspRI CASTG 6 cut(s) 120, 888, 994, 1012, 1027, 1219
VpaK11BI GGWCC 4 cut(s) 59, 199, 545, 1122
XapI RAATTY 5 cut(s) 19, 125, 319, 805, 1235
XceI RCATGY 2 cut(s) 113, 927
XhoI CTCGAG 1 cut(s) 744
XmiI GTMKAC 2 cut(s) 595, 777
XmnI GAANNNNTTC 1 cut(s) 707
XspI CTAG 4 cut(s) 374, 590, 696, 1148
ZraI GACGTC 1 cut(s) 518
Zsp2I ATGCAT 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.