Rroxscaffold_2G00118420

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001605
Physical Location & Seq
Forward (+)
49891599 .. 49892993
1395 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00118420.1

Sequence Viewer

Length: 1395 bp
ATGTCACGAAACGAAGACATGGCTTCCATGAATGAAGCTCCAATTCAGAGCATCACAATCCATGAACAGTTATCTAAGGAGGAGTTGTTCAAAAACATAGAGGAAGCAGAAGCGAGGCTATGCCAGTTTCAAAGATCGAAACCAAAGATTCAAAGGGTTCCCGACATGCTTCGAGATCACCCAAATTTCGAGAAATTCTATGAGCCAAGGGCAGTGGCACTTGGTCCCTTCCATCATGATAAAGCAAGATGTCAGCTGGCAGAGAAGTTCAAGCTTGCACTGGCAGCAAAGTTTATCAAAGACAGTGGCCGTCCAGCTAAAGATTTGCACAAGATCGTTGAGGACAACATCAACACACTAAAGGACTGCTATGATGAAAAAGCAACAATGTCCTACACCAACGAGGCCCTCACACACTTGTTATTCTTAGATGGGTGTTCAACCTTACAGTTCATATACTCATTTATGAATAACGAGTTAGCAAATTTCAAGATCAAGAGGGATCAGGTGGCTTTTGCAGAACAGGACTTGTTCCTGCTAGAAAACCAACTCCCTTACCAAGTCCTCAAGCTGTTGATGAGCAAAAGTGACAAAGAGAGGGACTTGAAGACCGCAATCGCTGGATTTGTTGGAAGGAACATCATGGCAGCAGGAAAAAAATGGAAATGGCATAAACACAAGAAAACGAGTCAACCAGGAGATATCGTCGTAAACATGGAAGAGCCCACTCATCTTCTCGAGCTTCTCAGGACAAAAATGCTAGGTCCCGAAGAATCTATCGCCCCCAAGAAGAAAAAACCTAAAGATTGCCGACAATCATTCCGCAACATACAGGAGCTTAAAGCAACAGGGATCCATTTAAAGCCTAGTAAGACAAGCACCCTGAGGGACATATCTTTTACTCATCTTCTAGGCTTTGCAGGATTCCAATATCTTCCACCAATATCAGTAGACGACTCCACGAGGCCTAAGTTCTTGAATTTGATAGCCTATGAAATGTGTCCTGATTTCCAAAATGACTTTGGGGTCACCTCTTACATATGCTTCTTGGATTCACTGATTGATCATGCAGATGATGTTAAACAGCTAAGGTCGGCACGCGTATTACACAACTTACTTGGGAGTGATGAAGAGGTGGCTCAACTTTTCAATGAGATAGGCACTGACTTGGTGCCTAACAGTGGAACATACCTCAGTGTCAAATCCGAATTAGAAAAGCACTACAAAACTAAGTGGAAAAACTGGATGGCTCAATTCTGTCATGATCACTTCAGTAGCCCCTGGACTATCCTGGCTTTCCTTGGTGTTTTAGCAGCTCTGGGGTTAAGCAGCATCCAGACTTGGTACACAATCTATTCTCCCCCTCTACCTGCGATGCTGTATGCGAGTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

464

Amino Acids

53.2

Weight (kDa)

7.99

Isoelectric Point (pI)

43.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 50 - 440 3.8e-90 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1025
Acc36I ACCTGC 1 cut(s) 1378
AccB1I GGYRCC 1 cut(s) 1171
AccI GTMKAC 1 cut(s) 951
AccII CGCG 1 cut(s) 1101
AciI CCGC 2 cut(s) 612, 823
AclWI GGATC 3 cut(s) 510, 847, 860
AcoI YGGCCR 1 cut(s) 307
AcsI RAATTY 4 cut(s) 184, 194, 484, 979
AcuI CTGAAG 1 cut(s) 1255
AfaI GTAC 2 cut(s) 1346, 1390
AfiI CCNNNNNNNGG 1 cut(s) 1181
AflIII ACRYGT 1 cut(s) 1099
AgsI TTSAA 9 cut(s) 91, 131, 152, 271, 441, 490, 607, 979, 1150
AjnI CCWGG 3 cut(s) 694, 1280, 1290
AloI GAACNNNNNNTCC 2 cut(s) 71, 103
AluBI AGCT 9 cut(s) 38, 256, 274, 317, 571, 742, 838, 1087, 1316
AluI AGCT 9 cut(s) 38, 256, 274, 317, 571, 742, 838, 1087, 1316
AlwI GGATC 3 cut(s) 510, 847, 860
Ama87I CYCGRG 1 cut(s) 737
AoxI GGCC 3 cut(s) 307, 405, 965
ApeKI GCWGC 4 cut(s) 284, 647, 1313, 1329
ApoI RAATTY 4 cut(s) 184, 194, 484, 979
AspS9I GGNCC 3 cut(s) 224, 406, 764
AsuHPI GGTGA 2 cut(s) 170, 1021
AvaI CYCGRG 1 cut(s) 737
AvaII GGWCC 2 cut(s) 224, 764
AxyI CCTNAGG 1 cut(s) 884
BamHI GGATCC 1 cut(s) 852
BanI GGYRCC 1 cut(s) 1171
BanII GRGCYC 1 cut(s) 726
BauI CACGAG 1 cut(s) 961
BbsI GAAGAC 2 cut(s) 21, 614
BbvI GCAGC 4 cut(s) 296, 659, 1325, 1341
BccI CCATC 3 cut(s) 240, 425, 1240
BceAI ACGGC 1 cut(s) 294
BciT130I CCWGG 3 cut(s) 696, 1282, 1292
BclI TGATCA 2 cut(s) 1063, 1264
BfaI CTAG 4 cut(s) 539, 761, 867, 911
BfuAI ACCTGC 1 cut(s) 1378
BisI GCNGC 4 cut(s) 285, 648, 1314, 1330
BlsI GCNGC 4 cut(s) 286, 649, 1315, 1331
BmcAI AGTACT 1 cut(s) 1390
Bme1390I CCNGG 3 cut(s) 696, 1282, 1292
Bme18I GGWCC 2 cut(s) 224, 764
BmeT110I CYCGRG 1 cut(s) 737
BmgT120I GGNCC 3 cut(s) 224, 406, 764
BmiI GGNNCC 5 cut(s) 159, 226, 766, 854, 1173
BmrFI CCNGG 3 cut(s) 696, 1282, 1292
BmsI GCATC 3 cut(s) 60, 1341, 1365
BpiI GAAGAC 2 cut(s) 21, 614
Bpu10I CCTNAGC 1 cut(s) 1088
BpuEI CTTGAG 1 cut(s) 551
BsaJI CCNNGG 3 cut(s) 206, 1280, 1300
BsaXI ACNNNNNCTCC 4 cut(s) 71, 101, 690, 720
Bsc4I CCNNNNNNNGG 1 cut(s) 1181
Bse1I ACTGG 3 cut(s) 124, 285, 1247
Bse21I CCTNAGG 1 cut(s) 884
BseBI CCWGG 3 cut(s) 696, 1282, 1292
BseDI CCNNGG 3 cut(s) 206, 1280, 1300
BseGI GGATG 2 cut(s) 1251, 1332
BseLI CCNNNNNNNGG 1 cut(s) 1181
BseMII CTCAG 3 cut(s) 760, 875, 1207
BseNI ACTGG 3 cut(s) 124, 285, 1247
BseRI GAGGAG 1 cut(s) 95
BseXI GCAGC 4 cut(s) 296, 659, 1325, 1341
Bsh1236I CGCG 1 cut(s) 1101
BshFI GGCC 3 cut(s) 309, 407, 967
BshNI GGYRCC 1 cut(s) 1171
BsiHKCI CYCGRG 1 cut(s) 737
BslFI GGGAC 4 cut(s) 210, 614, 750, 902
BslI CCNNNNNNNGG 1 cut(s) 1181
BsmFI GGGAC 4 cut(s) 210, 614, 750, 902
BsnI GGCC 3 cut(s) 309, 407, 967
BsoBI CYCGRG 1 cut(s) 737
Bsp1286I GDGCHC 1 cut(s) 726
Bsp143I GATC 8 cut(s) 134, 175, 333, 492, 502, 852, 1063, 1264
BspACI CCGC 2 cut(s) 612, 823
BspANI GGCC 3 cut(s) 309, 407, 967
BspCNI CTCAG 3 cut(s) 759, 876, 1206
BspFNI CGCG 1 cut(s) 1101
BspHI TCATGA 2 cut(s) 235, 1261
BspLI GGNNCC 5 cut(s) 159, 226, 766, 854, 1173
BspMI ACCTGC 1 cut(s) 1378
BspPI GGATC 3 cut(s) 510, 847, 860
BspQI GCTCTTC 1 cut(s) 714
BspT107I GGYRCC 1 cut(s) 1171
BsrI ACTGG 3 cut(s) 124, 285, 1247
BssECI CCNNGG 3 cut(s) 206, 1280, 1300
BssMI GATC 8 cut(s) 134, 175, 333, 492, 502, 852, 1063, 1264
BssSI CACGAG 1 cut(s) 961
BssT1I CCWWGG 2 cut(s) 206, 1300
Bst2BI CACGAG 1 cut(s) 961
Bst2UI CCWGG 3 cut(s) 696, 1282, 1292
Bst4CI ACNGT 4 cut(s) 69, 305, 450, 1181
Bst6I CTCTTC 2 cut(s) 714, 1125
BstC8I GCNNGC 3 cut(s) 258, 276, 1099
BstDEI CTNAG 8 cut(s) 75, 427, 746, 884, 969, 1088, 1193, 1230
BstEII GGTNACC 1 cut(s) 1027
BstF5I GGATG 2 cut(s) 1251, 1332
BstFNI CGCG 1 cut(s) 1101
BstKTI GATC 8 cut(s) 137, 178, 336, 495, 505, 855, 1066, 1267
BstMBI GATC 8 cut(s) 134, 175, 333, 492, 502, 852, 1063, 1264
BstMWI GCNNNNNNNGC 1 cut(s) 284
BstNI CCWGG 3 cut(s) 696, 1282, 1292
BstNSI RCATGY 1 cut(s) 169
BstPI GGTNACC 1 cut(s) 1027
BstSCI CCNGG 3 cut(s) 694, 1280, 1290
BstUI CGCG 1 cut(s) 1101
BstV1I GCAGC 4 cut(s) 296, 659, 1325, 1341
BstV2I GAAGAC 2 cut(s) 21, 614
BstX2I RGATCY 1 cut(s) 852
BstYI RGATCY 1 cut(s) 852
Bsu36I CCTNAGG 1 cut(s) 884
BsuRI GGCC 3 cut(s) 309, 407, 967
BtgZI GCGATG 1 cut(s) 1388
BtsCI GGATG 2 cut(s) 1251, 1332
BtsI GCAGTG 1 cut(s) 219
BtsIMutI CAGTG 7 cut(s) 219, 278, 310, 1055, 1161, 1186, 1201
BveI ACCTGC 1 cut(s) 1378
Cac8I GCNNGC 3 cut(s) 258, 276, 1099
CciI TCATGA 2 cut(s) 235, 1261
Cfr13I GGNCC 3 cut(s) 224, 406, 764
Csp6I GTAC 2 cut(s) 1345, 1389
CspCI CAANNNNNGTGG 4 cut(s) 195, 230, 286, 321
CviAII CATG 9 cut(s) 19, 28, 62, 166, 236, 643, 715, 1067, 1262
CviQI GTAC 2 cut(s) 1345, 1389
DdeI CTNAG 8 cut(s) 75, 427, 746, 884, 969, 1088, 1193, 1230
DpnI GATC 8 cut(s) 136, 177, 335, 494, 504, 854, 1065, 1266
DpnII GATC 8 cut(s) 134, 175, 333, 492, 502, 852, 1063, 1264
DraI TTTAAA 1 cut(s) 861
DrdI GACNNNNNNGTC 1 cut(s) 1025
DseDI GACNNNNNNGTC 1 cut(s) 1025
EaeI YGGCCR 1 cut(s) 307
Eam1104I CTCTTC 2 cut(s) 714, 1125
EarI CTCTTC 2 cut(s) 714, 1125
Eco130I CCWWGG 2 cut(s) 206, 1300
Eco147I AGGCCT 1 cut(s) 967
Eco24I GRGCYC 1 cut(s) 726
Eco32I GATATC 1 cut(s) 703
Eco47I GGWCC 2 cut(s) 224, 764
Eco57I CTGAAG 1 cut(s) 1255
Eco81I CCTNAGG 1 cut(s) 884
Eco88I CYCGRG 1 cut(s) 737
Eco91I GGTNACC 1 cut(s) 1027
EcoO109I RGGNCCY 2 cut(s) 406, 764
EcoO65I GGTNACC 1 cut(s) 1027
EcoRII CCWGG 3 cut(s) 694, 1280, 1290
EcoRV GATATC 1 cut(s) 703
EcoT14I CCWWGG 2 cut(s) 206, 1300
EcoT38I GRGCYC 1 cut(s) 726
ErhI CCWWGG 2 cut(s) 206, 1300
FaeI CATG 9 cut(s) 22, 31, 65, 169, 239, 646, 718, 1070, 1265
FaqI GGGAC 4 cut(s) 210, 614, 750, 902
FatI CATG 9 cut(s) 18, 27, 61, 165, 235, 642, 714, 1066, 1261
FauNDI CATATG 1 cut(s) 1040
FbaI TGATCA 2 cut(s) 1063, 1264
FblI GTMKAC 1 cut(s) 951
Fnu4HI GCNGC 4 cut(s) 285, 648, 1314, 1330
FokI GGATG 2 cut(s) 1258, 1319
FriOI GRGCYC 1 cut(s) 726
Fsp4HI GCNGC 4 cut(s) 285, 648, 1314, 1330
FspBI CTAG 4 cut(s) 539, 761, 867, 911
GluI GCNGC 4 cut(s) 285, 648, 1314, 1330
HaeIII GGCC 3 cut(s) 309, 407, 967
Hin1II CATG 9 cut(s) 22, 31, 65, 169, 239, 646, 718, 1070, 1265
HincII GTYRAC 1 cut(s) 692
HindII GTYRAC 1 cut(s) 692
HindIII AAGCTT 1 cut(s) 272
HinfI GANTC 6 cut(s) 148, 688, 773, 924, 956, 1052
HphI GGTGA 2 cut(s) 170, 1021
Hpy166II GTNNAC 4 cut(s) 692, 712, 952, 1347
Hpy188I TCNGA 2 cut(s) 48, 1207
Hpy8I GTNNAC 4 cut(s) 692, 712, 952, 1347
Hpy99I CGWCG 1 cut(s) 710
HpyAV CCTTC 2 cut(s) 238, 627
HpyCH4III ACNGT 4 cut(s) 69, 305, 450, 1181
HpyCH4V TGCA 5 cut(s) 278, 328, 518, 920, 1070
HpyF10VI GCNNNNNNNGC 1 cut(s) 284
HpyF3I CTNAG 8 cut(s) 75, 427, 746, 884, 969, 1088, 1193, 1230
Hsp92II CATG 9 cut(s) 22, 31, 65, 169, 239, 646, 718, 1070, 1265
Ksp22I TGATCA 2 cut(s) 1063, 1264
Kzo9I GATC 8 cut(s) 134, 175, 333, 492, 502, 852, 1063, 1264
LguI GCTCTTC 1 cut(s) 714
LmnI GCTCC 2 cut(s) 43, 835
Lsp1109I GCAGC 4 cut(s) 296, 659, 1325, 1341
LweI GCATC 3 cut(s) 60, 1341, 1365
MaeI CTAG 4 cut(s) 539, 761, 867, 911
MaeIII GTNAC 3 cut(s) 3, 587, 1027
MalI GATC 8 cut(s) 136, 177, 335, 494, 504, 854, 1065, 1266
MboI GATC 8 cut(s) 134, 175, 333, 492, 502, 852, 1063, 1264
MboII GAAGA 9 cut(s) 26, 619, 725, 731, 782, 802, 899, 926, 1142
MflI RGATCY 1 cut(s) 852
MhlI GDGCHC 1 cut(s) 726
MluCI AATT 7 cut(s) 42, 184, 194, 484, 979, 1208, 1253
MluI ACGCGT 1 cut(s) 1099
MlyI GAGTC 2 cut(s) 697, 950
MmeI TCCRAC 1 cut(s) 610
MseI TTAA 4 cut(s) 840, 860, 1080, 1325
MslI CAYNNNNRTG 1 cut(s) 1071
MspA1I CMGCKG 1 cut(s) 256
MspR9I CCNGG 3 cut(s) 696, 1282, 1292
MvaI CCWGG 3 cut(s) 696, 1282, 1292
MvnI CGCG 1 cut(s) 1101
MwoI GCNNNNNNNGC 1 cut(s) 284
NdeI CATATG 1 cut(s) 1040
NdeII GATC 8 cut(s) 134, 175, 333, 492, 502, 852, 1063, 1264
NlaIII CATG 9 cut(s) 22, 31, 65, 169, 239, 646, 718, 1070, 1265
NlaIV GGNNCC 5 cut(s) 159, 226, 766, 854, 1173
NmuCI GTSAC 3 cut(s) 3, 587, 1027
NspI RCATGY 1 cut(s) 169
PaeR7I CTCGAG 1 cut(s) 737
PagI TCATGA 2 cut(s) 235, 1261
PceI AGGCCT 1 cut(s) 967
PciSI GCTCTTC 1 cut(s) 714
PfeI GAWTC 4 cut(s) 148, 773, 924, 1052
PkrI GCNGC 4 cut(s) 286, 649, 1315, 1331
PleI GAGTC 2 cut(s) 696, 950
PpsI GAGTC 2 cut(s) 696, 950
PpuMI RGGWCCY 1 cut(s) 764
Psp5II RGGWCCY 1 cut(s) 764
Psp6I CCWGG 3 cut(s) 694, 1280, 1290
PspEI GGTNACC 1 cut(s) 1027
PspGI CCWGG 3 cut(s) 694, 1280, 1290
PspN4I GGNNCC 5 cut(s) 159, 226, 766, 854, 1173
PspPI GGNCC 3 cut(s) 224, 406, 764
PspPPI RGGWCCY 1 cut(s) 764
PsuI RGATCY 1 cut(s) 852
PvuII CAGCTG 1 cut(s) 256
RsaI GTAC 2 cut(s) 1346, 1390
RsaNI GTAC 2 cut(s) 1345, 1389
RseI CAYNNNNRTG 1 cut(s) 1071
SapI GCTCTTC 1 cut(s) 714
SaqAI TTAA 4 cut(s) 840, 860, 1080, 1325
SatI GCNGC 4 cut(s) 285, 648, 1314, 1330
Sau3AI GATC 8 cut(s) 134, 175, 333, 492, 502, 852, 1063, 1264
Sau96I GGNCC 3 cut(s) 224, 406, 764
ScaI AGTACT 1 cut(s) 1390
SchI GAGTC 2 cut(s) 697, 950
ScrFI CCNGG 3 cut(s) 696, 1282, 1292
SduI GDGCHC 1 cut(s) 726
SfaNI GCATC 3 cut(s) 60, 1341, 1365
Sfr274I CTCGAG 1 cut(s) 737
SinI GGWCC 2 cut(s) 224, 764
SlaI CTCGAG 1 cut(s) 737
SmiMI CAYNNNNRTG 1 cut(s) 1071
SmlI CTYRAG 2 cut(s) 566, 737
SmoI CTYRAG 2 cut(s) 566, 737
Sse9I AATT 7 cut(s) 42, 184, 194, 484, 979, 1208, 1253
SseBI AGGCCT 1 cut(s) 967
SsiI CCGC 2 cut(s) 612, 823
SspMI CTAG 4 cut(s) 539, 761, 867, 911
StuI AGGCCT 1 cut(s) 967
StyD4I CCNGG 3 cut(s) 694, 1280, 1290
StyI CCWWGG 2 cut(s) 206, 1300
TaaI ACNGT 4 cut(s) 69, 305, 450, 1181
TaqI TCGA 4 cut(s) 137, 172, 189, 738
TasI AATT 7 cut(s) 42, 184, 194, 484, 979, 1208, 1253
TatI WGTACW 1 cut(s) 1388
TfiI GAWTC 4 cut(s) 148, 773, 924, 1052
Tru1I TTAA 4 cut(s) 840, 860, 1080, 1325
Tru9I TTAA 4 cut(s) 840, 860, 1080, 1325
TscAI CASTG 7 cut(s) 219, 285, 310, 1062, 1168, 1186, 1201
TseFI GTSAC 3 cut(s) 3, 587, 1027
TseI GCWGC 4 cut(s) 284, 647, 1313, 1329
Tsp45I GTSAC 3 cut(s) 3, 587, 1027
TspDTI ATGAA 8 cut(s) 44, 48, 78, 390, 442, 482, 1008, 1143
TspRI CASTG 7 cut(s) 219, 285, 310, 1062, 1168, 1186, 1201
VpaK11BI GGWCC 2 cut(s) 224, 764
XapI RAATTY 4 cut(s) 184, 194, 484, 979
XceI RCATGY 1 cut(s) 169
XcmI CCANNNNNNNNNTGG 1 cut(s) 1019
XhoI CTCGAG 1 cut(s) 737
XmiI GTMKAC 1 cut(s) 951
XspI CTAG 4 cut(s) 539, 761, 867, 911
ZrmI AGTACT 1 cut(s) 1390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.