Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001605

Physical Location & Seq

Genomic Coordinates Forward (+)

49789369 .. 49790085

Gene Structure 717 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00118330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGCACGAAACGAAGACATGGCTTCCATGAATGGAGCTCCTAGTCGGAGCATCAAAATCCTTGAGTTCTCTAAGGAGGAGTTGTTCCAAAACATCAAGGAAGCAGCAGAAAGGCTAGCTCAGCCTCAGTTTCAGTCTCAAAGCGCAAAACCAAAGATCCAAAGGGTTCCAGACATGCTCCGAGATCACCCAAACTCCGAGAAATACTATGTGCCAAGGGCAGTAGCACTTGGTCCTTTCCATCATAATAAAGCAAGGCGTCAGCTGGCAGAGAAGTTCAAGCTCGAGCTGGCAGCAAAATTTATCCTACAAAGTGGCAGGCGAGCTGAAGATTTGCACAAGATCATTGAGGACAACATCAACACACTAAAGGACTGCTACGATGAGGAAGCAACAAGGTCCTACACCGACGAGGCCCTCACACACTTGTTATTCTTAGATGGGTGTTCAACCTTACAGTTCATATACTCGTTTATGCATAATGAGTTACAAGAATTCAAGATCAAGAGGGATCAGGTTGCCTTTGCAGAACAGGATTTGTTCTTGCTAGAAAACCAACTCCCTTACCAAGTCCTGAAGTTGTTGATGAGCAAAAGTGACAAAGCGGAAGAGTTGAAGTTCGCAATCGATGAATTTGTTGGAAGGAACATCATGGAAGCAAAAAAGGGAAATGGCACAAACACAAAAGAACACGTCGAGCAGGAGGTACAGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

238

Amino Acids

27.58

Weight (kDa)

6.03

Isoelectric Point (pI)

59.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF247	PF03140	53 - 217	5.9e-32	Plant protein of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001605)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02910 FvH4_6g25140
malus_domestica	MD00G1049100.v1.1 MD02G1233700.v1.1 MD07G1070100.v1.1 MD12G1022100.v1.1
prunus_persica	Prupe.7G045600_v2.0.a1 Prupe.7G045700_v2.0.a1 Prupe.7G045800_v2.0.a1 Prupe.7G046000_v2.0.a1 Prupe.8G075900_v2.0.a1 Prupe.8G076000_v2.0.a1
pyrus_communis	pycom12g02050 pycom12g07700 pycom12g07720 pycom14g07350 pycom14g07360
rosa_chinensis	RchiOBHm_Chr2g0125011
rosa_laevigata	RLG00000009906 RLG00000018842
rosa_multiflora	Rmu_sc0000796.1_g000003 Rmu_sc0000796.1_g000022 Rmu_sc0000796.1_g000026 Rmu_sc0001251.1_g000010 Rmu_sc0001251.1_g000012 Rmu_sc0010311.1_g000001 Rmu_sc0010311.1_g000003 Rmu_sc0010311.1_g000008 Rmu_sc0010311.1_g000010
rosa_roxburghii	Rroxscaffold_2G00118310 Rroxscaffold_2G00118330 Rroxscaffold_2G00118420 Rroxscaffold_2G00118460 Rroxscaffold_2G00118760
rosa_rugosa	Rorug02G0254900
rosa_samantha	Rh2AG313200 Rh2AG313500 Rh2BG321400 Rh2BG321800 Rh2CG303200 Rh2CG303500 Rh2CG303900 Rh2CG304000 Rh2DG339200 Rh2DG339500 Rh2DG340000 Rh2DG340100
rosa_wichuraiana	Rw2G025320 Rw2G025330 Rw2G025360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	605
AclWI	GGATC	2 cut(s)	151, 519
AcsI	RAATTY	3 cut(s)	299, 494, 632
AcuI	CTGAAG	2 cut(s)	348, 596
AcyI	GRCGYC	1 cut(s)	259
AfaI	GTAC	1 cut(s)	708
AflIII	ACRYGT	1 cut(s)	691
AgsI	TTSAA	4 cut(s)	280, 450, 499, 616
AjiI	CACGTC	1 cut(s)	694
AloI	GAACNNNNNNTCC	2 cut(s)	68, 100
AluBI	AGCT	6 cut(s)	38, 119, 265, 283, 289, 326
AluI	AGCT	6 cut(s)	38, 119, 265, 283, 289, 326
Alw21I	GWGCWC	1 cut(s)	40
Alw26I	GTCTC	1 cut(s)	141
AlwI	GGATC	2 cut(s)	151, 519
Ama87I	CYCGRG	1 cut(s)	284
AoxI	GGCC	1 cut(s)	414
ApeKI	GCWGC	2 cut(s)	104, 293
ApoI	RAATTY	3 cut(s)	299, 494, 632
AspLEI	GCGC	1 cut(s)	146
AspS9I	GGNCC	3 cut(s)	233, 399, 415
AsuHPI	GGTGA	1 cut(s)	179
AsuNHI	GCTAGC	1 cut(s)	115
AvaI	CYCGRG	1 cut(s)	284
AvaII	GGWCC	2 cut(s)	233, 399
BanII	GRGCYC	1 cut(s)	40
BbsI	GAAGAC	1 cut(s)	21
Bbv12I	GWGCWC	1 cut(s)	40
BbvI	GCAGC	2 cut(s)	116, 305
BccI	CCATC	2 cut(s)	249, 434
BcoDI	GTCTC	1 cut(s)	141
BfaI	CTAG	3 cut(s)	42, 116, 548
BisI	GCNGC	2 cut(s)	105, 294
BlpI	GCTNAGC	1 cut(s)	120
BlsI	GCNGC	2 cut(s)	106, 295
Bme18I	GGWCC	2 cut(s)	233, 399
BmeT110I	CYCGRG	1 cut(s)	284
BmgBI	CACGTC	1 cut(s)	694
BmgT120I	GGNCC	3 cut(s)	233, 399, 415
BmiI	GGNNCC	1 cut(s)	168
BmsI	GCATC	1 cut(s)	60
BmtI	GCTAGC	1 cut(s)	119
BpiI	GAAGAC	1 cut(s)	21
Bpu1102I	GCTNAGC	1 cut(s)	120
BpuEI	CTTGAG	1 cut(s)	83
Bsa29I	ATCGAT	1 cut(s)	627
BsaHI	GRCGYC	1 cut(s)	259
BsaJI	CCNNGG	1 cut(s)	215
BsaXI	ACNNNNNCTCC	5 cut(s)	68, 98, 179, 209, 695
BseCI	ATCGAT	1 cut(s)	627
BseDI	CCNNGG	1 cut(s)	215
BseMII	CTCAG	2 cut(s)	134, 140
BseRI	GAGGAG	1 cut(s)	92
BseXI	GCAGC	2 cut(s)	116, 305
BshFI	GGCC	1 cut(s)	416
BshVI	ATCGAT	1 cut(s)	627
BsiHKAI	GWGCWC	1 cut(s)	40
BsiHKCI	CYCGRG	1 cut(s)	284
BsmAI	GTCTC	1 cut(s)	141
BsnI	GGCC	1 cut(s)	416
BsoBI	CYCGRG	1 cut(s)	284
Bsp1286I	GDGCHC	1 cut(s)	40
Bsp143I	GATC	5 cut(s)	156, 184, 342, 501, 511
Bsp1720I	GCTNAGC	1 cut(s)	120
BspACI	CCGC	1 cut(s)	605
BspANI	GGCC	1 cut(s)	416
BspCNI	CTCAG	2 cut(s)	133, 139
BspDI	ATCGAT	1 cut(s)	627
BspLI	GGNNCC	1 cut(s)	168
BspOI	GCTAGC	1 cut(s)	119
BspPI	GGATC	2 cut(s)	151, 519
BssECI	CCNNGG	1 cut(s)	215
BssMI	GATC	5 cut(s)	156, 184, 342, 501, 511
BssNI	GRCGYC	1 cut(s)	259
BssT1I	CCWWGG	1 cut(s)	215
Bst4CI	ACNGT	2 cut(s)	459, 711
Bst6I	CTCTTC	1 cut(s)	603
BstACI	GRCGYC	1 cut(s)	259
BstC8I	GCNNGC	5 cut(s)	117, 267, 291, 320, 324
BstDEI	CTNAG	4 cut(s)	72, 120, 126, 436
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	5 cut(s)	159, 187, 345, 504, 514
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	5 cut(s)	156, 184, 342, 501, 511
BstMWI	GCNNNNNNNGC	1 cut(s)	121
BstNSI	RCATGY	1 cut(s)	178
BstV1I	GCAGC	2 cut(s)	116, 305
BstV2I	GAAGAC	1 cut(s)	21
BstX2I	RGATCY	1 cut(s)	156
BstYI	RGATCY	1 cut(s)	156
Bsu15I	ATCGAT	1 cut(s)	627
BsuRI	GGCC	1 cut(s)	416
BsuTUI	ATCGAT	1 cut(s)	627
BtrI	CACGTC	1 cut(s)	694
Cac8I	GCNNGC	5 cut(s)	117, 267, 291, 320, 324
CfoI	GCGC	1 cut(s)	146
Cfr13I	GGNCC	3 cut(s)	233, 399, 415
ClaI	ATCGAT	1 cut(s)	627
CseI	GACGC	1 cut(s)	248
Csp6I	GTAC	1 cut(s)	707
CviAII	CATG	4 cut(s)	19, 28, 175, 652
CviQI	GTAC	1 cut(s)	707
DdeI	CTNAG	4 cut(s)	72, 120, 126, 436
DpnI	GATC	5 cut(s)	158, 186, 344, 503, 513
DpnII	GATC	5 cut(s)	156, 184, 342, 501, 511
Eam1104I	CTCTTC	1 cut(s)	603
EarI	CTCTTC	1 cut(s)	603
Ecl136II	GAGCTC	1 cut(s)	38
Eco130I	CCWWGG	1 cut(s)	215
Eco24I	GRGCYC	1 cut(s)	40
Eco47I	GGWCC	2 cut(s)	233, 399
Eco53kI	GAGCTC	1 cut(s)	38
Eco57I	CTGAAG	2 cut(s)	348, 596
Eco88I	CYCGRG	1 cut(s)	284
EcoICRI	GAGCTC	1 cut(s)	38
EcoO109I	RGGNCCY	2 cut(s)	399, 415
EcoRI	GAATTC	1 cut(s)	494
EcoT14I	CCWWGG	1 cut(s)	215
EcoT22I	ATGCAT	1 cut(s)	480
EcoT38I	GRGCYC	1 cut(s)	40
ErhI	CCWWGG	1 cut(s)	215
FaeI	CATG	4 cut(s)	22, 31, 178, 655
FatI	CATG	4 cut(s)	18, 27, 174, 651
Fnu4HI	GCNGC	2 cut(s)	105, 294
FriOI	GRGCYC	1 cut(s)	40
Fsp4HI	GCNGC	2 cut(s)	105, 294
FspBI	CTAG	3 cut(s)	42, 116, 548
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	2 cut(s)	105, 294
HaeIII	GGCC	1 cut(s)	416
HgaI	GACGC	1 cut(s)	248
HhaI	GCGC	1 cut(s)	146
Hin1I	GRCGYC	1 cut(s)	259
Hin1II	CATG	4 cut(s)	22, 31, 178, 655
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HphI	GGTGA	1 cut(s)	179
Hpy188I	TCNGA	3 cut(s)	48, 182, 199
Hpy188III	TCNNGA	4 cut(s)	170, 499, 505, 574
Hpy99I	CGWCG	2 cut(s)	413, 698
HpyAV	CCTTC	1 cut(s)	636
HpyCH4III	ACNGT	2 cut(s)	459, 711
HpyCH4IV	ACGT	1 cut(s)	693
HpyCH4V	TGCA	3 cut(s)	337, 478, 527
HpyF10VI	GCNNNNNNNGC	1 cut(s)	121
HpyF3I	CTNAG	4 cut(s)	72, 120, 126, 436
HpySE526I	ACGT	1 cut(s)	693
Hsp92I	GRCGYC	1 cut(s)	259
Hsp92II	CATG	4 cut(s)	22, 31, 178, 655
HspAI	GCGC	1 cut(s)	144
Kzo9I	GATC	5 cut(s)	156, 184, 342, 501, 511
LmnI	GCTCC	4 cut(s)	35, 43, 48, 183
LpnPI	CCDG	8 cut(s)	183, 251, 275, 304, 500, 518, 587, 686
Lsp1109I	GCAGC	2 cut(s)	116, 305
LweI	GCATC	1 cut(s)	60
MaeI	CTAG	3 cut(s)	42, 116, 548
MaeII	ACGT	1 cut(s)	693
MaeIII	GTNAC	2 cut(s)	486, 596
MalI	GATC	5 cut(s)	158, 186, 344, 503, 513
MboI	GATC	5 cut(s)	156, 184, 342, 501, 511
MboII	GAAGA	3 cut(s)	26, 341, 620
MflI	RGATCY	1 cut(s)	156
MhlI	GDGCHC	1 cut(s)	40
MluCI	AATT	3 cut(s)	299, 494, 632
MmeI	TCCRAC	2 cut(s)	26, 619
MnlI	CCTC	8 cut(s)	70, 135, 343, 379, 406, 428, 501, 697
Mph1103I	ATGCAT	1 cut(s)	480
MspA1I	CMGCKG	1 cut(s)	265
MwoI	GCNNNNNNNGC	1 cut(s)	121
NdeII	GATC	5 cut(s)	156, 184, 342, 501, 511
NheI	GCTAGC	1 cut(s)	115
NlaIII	CATG	4 cut(s)	22, 31, 178, 655
NlaIV	GGNNCC	1 cut(s)	168
NmuCI	GTSAC	1 cut(s)	596
NsiI	ATGCAT	1 cut(s)	480
NspI	RCATGY	1 cut(s)	178
PaeR7I	CTCGAG	1 cut(s)	284
PkrI	GCNGC	2 cut(s)	106, 295
PpuMI	RGGWCCY	1 cut(s)	399
Psp124BI	GAGCTC	1 cut(s)	40
Psp5II	RGGWCCY	1 cut(s)	399
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	3 cut(s)	233, 399, 415
PspPPI	RGGWCCY	1 cut(s)	399
PspXI	VCTCGAGB	1 cut(s)	284
PsuI	RGATCY	1 cut(s)	156
PvuII	CAGCTG	1 cut(s)	265
RsaI	GTAC	1 cut(s)	708
RsaNI	GTAC	1 cut(s)	707
SacI	GAGCTC	1 cut(s)	40
SatI	GCNGC	2 cut(s)	105, 294
Sau3AI	GATC	5 cut(s)	156, 184, 342, 501, 511
Sau96I	GGNCC	3 cut(s)	233, 399, 415
SduI	GDGCHC	1 cut(s)	40
SfaNI	GCATC	1 cut(s)	60
Sfr274I	CTCGAG	1 cut(s)	284
SinI	GGWCC	2 cut(s)	233, 399
SlaI	CTCGAG	1 cut(s)	284
SmlI	CTYRAG	2 cut(s)	62, 284
SmoI	CTYRAG	2 cut(s)	62, 284
Sse9I	AATT	3 cut(s)	299, 494, 632
SsiI	CCGC	1 cut(s)	605
SspMI	CTAG	3 cut(s)	42, 116, 548
SstI	GAGCTC	1 cut(s)	40
StyI	CCWWGG	1 cut(s)	215
TaaI	ACNGT	2 cut(s)	459, 711
TaiI	ACGT	1 cut(s)	696
TaqI	TCGA	3 cut(s)	285, 627, 696
TasI	AATT	3 cut(s)	299, 494, 632
TseFI	GTSAC	1 cut(s)	596
TseI	GCWGC	2 cut(s)	104, 293
Tsp45I	GTSAC	1 cut(s)	596
TspDTI	ATGAA	3 cut(s)	44, 451, 645
VpaK11BI	GGWCC	2 cut(s)	233, 399
XapI	RAATTY	3 cut(s)	299, 494, 632
XceI	RCATGY	1 cut(s)	178
XhoI	CTCGAG	1 cut(s)	284
XspI	CTAG	3 cut(s)	42, 116, 548
Zsp2I	ATGCAT	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.