Rh2AG313500

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001605
Physical Location & Seq
Reverse (-)
40219480 .. 40221311
1832 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG313500.1

Sequence Viewer

Length: 1431 bp
ATGGCACGAAATGAAGACACTTCCATGAATGAAGCTCCATTCTGGAGCATCACAATTGATGACAAGTTATCCAGCGAGGAGTTGTTCAAACACATAAAAGGAGCAAAGGAAAGGCTAGCTCAGTTTCAAAGATCAAAACCAAAGATCCAAAGGGTTCCCTACATGCTTAGAGATCACAAAAAATTTGAGAAATACTATGAGCCAAGGGCAGTAGCAATTGGTCTTTTCCATCATGATAAACCAAGGTGTCAACTGGCAGAGAATTTCAAGCTTGCACTGGCAGAAAAATTTATCGAAGACAGCCGCCGTCAAGTTGAAGATTTGCACAAGATCATTGAGGACAACATCAACACACTGAAGGACTGCTATGATGAGGAAGCAACAAGGTCCTACACCAACAAGGCCCTCACAAACTTGTTATTCTTAGATGGATGTTCAACCTTACAGTTCATATACTCCTTCATGGAGAATAAGTTAGCAAGTTTCAACATCAAGAGAGATCAGGTGGCTTTTGCAGAACAGGACTTGTTCCTGCTAGAAAACCAACTCCCTTACCAAGTCCTCAAACTGTTGATGAGCTTAAGTGCCAAAGAGATGGACTTGAAGTCCGCAATCGATGGATTTGTTGGAAGGAACATCATGACAGCAGAAAAAAAAGGGAAACGGGACGAACCCAAAAAAAGTAGTCAACCAGGAGATGGTGTCATAGACAAGGAAGAGCCCACTCATCTTCTCGAGCTTCTCCGGACAAAAATGCTAGGCCCCCAATCTAACAACAGCACGGAGACTCATCGTCTCGAGCTTCTCTGGACAAAAATGCTACGCTGCAAATCTGACAACAGCACGGAGAAAAAAGGCCAACAATCATTCCGCAACATACAGGAGCTTAAAGCAGCAGGGATCCATTTAAGGTGTAGTAAGACAAGGACTTTGAGGGACATATCTTTTACTCATCCTCTAGGGCTTCTAGGCTTTCAAGGATTCCTAAATCTTCCACCACTATCTGTAGATGACTCCATGGGGCCCAAGTTCTTGAATTTGATAGCCTATGAGATGTGTCCTGATTTCCAAAATGACTCTGGGGTCACCTCTTACATATGCTTCCTGGATTCACTAATTGATCATGCAGATGATGTTAAACAGCTAAGGAAGGCACGCATACTACACAATTTACTTGGGAGTGATGAAGAGGTGGCTAAACTTTTCAATAAGATAGGTACTGATTTGGTGCCTAACAGTGAAACATACCAAGGTGTCAAAGACAAATTAGAAAGGCACTACAAAAACATGTGGAAAACCTGGATGGCTCAATTCTGTCACGATCATTTCAGTAGCCCCTGGACTATCCTGGCTTTCCTTGGTGTTCTAGCAGCTCTAGGGTTAAGCGGCATCCAGACCTGGTACACAATCAATTCTCCCTCCTCTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

476

Amino Acids

54.71

Weight (kDa)

7.62

Isoelectric Point (pI)

46.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 49 - 459 3.6e-93 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1082
AccB1I GGYRCC 1 cut(s) 1228
AccB7I CCANNNNNTGG 1 cut(s) 698
AccIII TCCGGA 1 cut(s) 744
AciI CCGC 4 cut(s) 304, 609, 871, 1386
AclWI GGATC 3 cut(s) 139, 895, 908
AcsI RAATTY 4 cut(s) 182, 262, 287, 1036
AcuI CTGAAG 1 cut(s) 377
AfaI GTAC 2 cut(s) 1219, 1403
AfiI CCNNNNNNNGG 1 cut(s) 698
AflII CTTAAG 1 cut(s) 580
AflIII ACRYGT 1 cut(s) 1287
AhdI GACNNNNNGTC 2 cut(s) 604, 792
AjnI CCWGG 6 cut(s) 691, 1104, 1298, 1337, 1347, 1397
AluBI AGCT 9 cut(s) 35, 119, 271, 579, 739, 802, 886, 1144, 1373
AluI AGCT 9 cut(s) 35, 119, 271, 579, 739, 802, 886, 1144, 1373
Alw26I GTCTC 2 cut(s) 779, 800
AlwI GGATC 3 cut(s) 139, 895, 908
Ama87I CYCGRG 2 cut(s) 734, 797
Aor13HI TCCGGA 1 cut(s) 744
AoxI GGCC 4 cut(s) 402, 760, 856, 1022
ApaI GGGCCC 1 cut(s) 1026
ApeKI GCWGC 3 cut(s) 825, 893, 1370
ApoI RAATTY 4 cut(s) 182, 262, 287, 1036
ArsI GACNNNNNNTTYG 2 cut(s) 913, 945
AspS9I GGNCC 5 cut(s) 387, 403, 761, 1022, 1023
AsuHPI GGTGA 1 cut(s) 1078
AsuNHI GCTAGC 1 cut(s) 115
AvaI CYCGRG 2 cut(s) 734, 797
AvaII GGWCC 1 cut(s) 387
BaeGI GKGCMC 1 cut(s) 1026
BamHI GGATCC 1 cut(s) 900
BanI GGYRCC 1 cut(s) 1228
BanII GRGCYC 2 cut(s) 723, 1026
BbsI GAAGAC 2 cut(s) 21, 303
BbvI GCAGC 3 cut(s) 812, 905, 1382
BccI CCATC 6 cut(s) 237, 422, 589, 611, 692, 1297
BceAI ACGGC 1 cut(s) 291
BciT130I CCWGG 6 cut(s) 693, 1106, 1300, 1339, 1349, 1399
BclI TGATCA 1 cut(s) 1120
BcoDI GTCTC 2 cut(s) 779, 800
BfaI CTAG 7 cut(s) 116, 536, 758, 959, 968, 1367, 1376
BfmI CTRYAG 1 cut(s) 1005
BfrI CTTAAG 1 cut(s) 580
BisI GCNGC 5 cut(s) 304, 826, 894, 1371, 1387
BlsI GCNGC 5 cut(s) 305, 827, 895, 1372, 1388
Bme1390I CCNGG 6 cut(s) 693, 1106, 1300, 1339, 1349, 1399
Bme18I GGWCC 1 cut(s) 387
BmeRI GACNNNNNGTC 2 cut(s) 604, 792
BmeT110I CYCGRG 2 cut(s) 734, 797
BmgT120I GGNCC 5 cut(s) 387, 403, 761, 1022, 1023
BmiI GGNNCC 6 cut(s) 156, 763, 902, 1023, 1024, 1230
BmrFI CCNGG 6 cut(s) 693, 1106, 1300, 1339, 1349, 1399
BmsI GCATC 2 cut(s) 57, 1398
BmtI GCTAGC 1 cut(s) 119
BpiI GAAGAC 2 cut(s) 21, 303
BpmI CTGGAG 1 cut(s) 64
Bpu10I CCTNAGC 1 cut(s) 1145
Bsa29I ATCGAT 1 cut(s) 615
BsaJI CCNNGG 6 cut(s) 203, 242, 1017, 1249, 1337, 1357
BsaWI WCCGGW 1 cut(s) 744
BsaXI ACNNNNNCTCC 4 cut(s) 458, 488, 687, 717
Bsc4I CCNNNNNNNGG 1 cut(s) 698
Bse1I ACTGG 2 cut(s) 258, 282
BseAI TCCGGA 1 cut(s) 744
BseBI CCWGG 6 cut(s) 693, 1106, 1300, 1339, 1349, 1399
BseCI ATCGAT 1 cut(s) 615
BseDI CCNNGG 6 cut(s) 203, 242, 1017, 1249, 1337, 1357
BseGI GGATG 4 cut(s) 437, 952, 1308, 1389
BseLI CCNNNNNNNGG 1 cut(s) 698
BseMII CTCAG 1 cut(s) 134
BseNI ACTGG 2 cut(s) 258, 282
BseRI GAGGAG 2 cut(s) 92, 1411
BseSI GKGCMC 1 cut(s) 1026
BseXI GCAGC 3 cut(s) 812, 905, 1382
BshFI GGCC 4 cut(s) 404, 762, 858, 1024
BshNI GGYRCC 1 cut(s) 1228
BshVI ATCGAT 1 cut(s) 615
BsiHKCI CYCGRG 2 cut(s) 734, 797
BsiSI CCGG 1 cut(s) 745
BslFI GGGAC 2 cut(s) 680, 950
BslI CCNNNNNNNGG 1 cut(s) 698
BsmAI GTCTC 2 cut(s) 779, 800
BsmBI CGTCTC 1 cut(s) 800
BsmFI GGGAC 2 cut(s) 680, 950
BsnI GGCC 4 cut(s) 404, 762, 858, 1024
BsoBI CYCGRG 2 cut(s) 734, 797
Bsp120I GGGCCC 1 cut(s) 1022
Bsp1286I GDGCHC 2 cut(s) 723, 1026
Bsp13I TCCGGA 1 cut(s) 744
Bsp143I GATC 8 cut(s) 131, 144, 172, 330, 499, 900, 1120, 1321
Bsp19I CCATGG 1 cut(s) 1017
BspACI CCGC 4 cut(s) 304, 609, 871, 1386
BspANI GGCC 4 cut(s) 404, 762, 858, 1024
BspCNI CTCAG 1 cut(s) 133
BspDI ATCGAT 1 cut(s) 615
BspEI TCCGGA 1 cut(s) 744
BspHI TCATGA 2 cut(s) 232, 639
BspLI GGNNCC 6 cut(s) 156, 763, 902, 1023, 1024, 1230
BspOI GCTAGC 1 cut(s) 119
BspPI GGATC 3 cut(s) 139, 895, 908
BspQI GCTCTTC 1 cut(s) 711
BspT107I GGYRCC 1 cut(s) 1228
BspTI CTTAAG 1 cut(s) 580
BsrI ACTGG 2 cut(s) 258, 282
BssECI CCNNGG 6 cut(s) 203, 242, 1017, 1249, 1337, 1357
BssMI GATC 8 cut(s) 131, 144, 172, 330, 499, 900, 1120, 1321
BssT1I CCWWGG 5 cut(s) 203, 242, 1017, 1249, 1357
Bst2UI CCWGG 6 cut(s) 693, 1106, 1300, 1339, 1349, 1399
Bst4CI ACNGT 3 cut(s) 447, 570, 1238
Bst6I CTCTTC 2 cut(s) 711, 1182
BstAFI CTTAAG 1 cut(s) 580
BstC8I GCNNGC 3 cut(s) 117, 273, 1156
BstDEI CTNAG 4 cut(s) 120, 167, 424, 1145
BstDSI CCRYGG 1 cut(s) 1017
BstEII GGTNACC 1 cut(s) 1084
BstF5I GGATG 4 cut(s) 437, 952, 1308, 1389
BstKTI GATC 8 cut(s) 134, 147, 175, 333, 502, 903, 1123, 1324
BstMAI GTCTC 2 cut(s) 779, 800
BstMBI GATC 8 cut(s) 131, 144, 172, 330, 499, 900, 1120, 1321
BstNI CCWGG 6 cut(s) 693, 1106, 1300, 1339, 1349, 1399
BstNSI RCATGY 2 cut(s) 166, 1291
BstPI GGTNACC 1 cut(s) 1084
BstSCI CCNGG 6 cut(s) 691, 1104, 1298, 1337, 1347, 1397
BstSFI CTRYAG 1 cut(s) 1005
BstSLI GKGCMC 1 cut(s) 1026
BstV1I GCAGC 3 cut(s) 812, 905, 1382
BstV2I GAAGAC 2 cut(s) 21, 303
BstX2I RGATCY 2 cut(s) 144, 900
BstXI CCANNNNNNTGG 1 cut(s) 595
BstYI RGATCY 2 cut(s) 144, 900
Bsu15I ATCGAT 1 cut(s) 615
BsuRI GGCC 4 cut(s) 404, 762, 858, 1024
BsuTUI ATCGAT 1 cut(s) 615
BtgI CCRYGG 1 cut(s) 1017
BtsCI GGATG 4 cut(s) 437, 952, 1308, 1389
BtsIMutI CAGTG 3 cut(s) 275, 353, 1243
Cac8I GCNNGC 3 cut(s) 117, 273, 1156
CciI TCATGA 2 cut(s) 232, 639
Cfr13I GGNCC 5 cut(s) 387, 403, 761, 1022, 1023
ClaI ATCGAT 1 cut(s) 615
CsiI ACCWGGT 1 cut(s) 1397
Csp6I GTAC 2 cut(s) 1218, 1402
CviAII CATG 8 cut(s) 25, 163, 233, 463, 640, 1018, 1124, 1288
CviQI GTAC 2 cut(s) 1218, 1402
DdeI CTNAG 4 cut(s) 120, 167, 424, 1145
DpnI GATC 8 cut(s) 133, 146, 174, 332, 501, 902, 1122, 1323
DpnII GATC 8 cut(s) 131, 144, 172, 330, 499, 900, 1120, 1321
DrdI GACNNNNNNGTC 1 cut(s) 1082
DriI GACNNNNNGTC 2 cut(s) 604, 792
DseDI GACNNNNNNGTC 1 cut(s) 1082
Eam1104I CTCTTC 2 cut(s) 711, 1182
Eam1105I GACNNNNNGTC 2 cut(s) 604, 792
EarI CTCTTC 2 cut(s) 711, 1182
Eco130I CCWWGG 5 cut(s) 203, 242, 1017, 1249, 1357
Eco24I GRGCYC 2 cut(s) 723, 1026
Eco47I GGWCC 1 cut(s) 387
Eco57I CTGAAG 1 cut(s) 377
Eco88I CYCGRG 2 cut(s) 734, 797
Eco91I GGTNACC 1 cut(s) 1084
EcoO109I RGGNCCY 4 cut(s) 387, 403, 761, 1022
EcoO65I GGTNACC 1 cut(s) 1084
EcoRII CCWGG 6 cut(s) 691, 1104, 1298, 1337, 1347, 1397
EcoT14I CCWWGG 5 cut(s) 203, 242, 1017, 1249, 1357
EcoT38I GRGCYC 2 cut(s) 723, 1026
ErhI CCWWGG 5 cut(s) 203, 242, 1017, 1249, 1357
Esp3I CGTCTC 1 cut(s) 800
FaeI CATG 8 cut(s) 28, 166, 236, 466, 643, 1021, 1127, 1291
FaqI GGGAC 2 cut(s) 680, 950
FatI CATG 8 cut(s) 24, 162, 232, 462, 639, 1017, 1123, 1287
FauNDI CATATG 1 cut(s) 1097
FbaI TGATCA 1 cut(s) 1120
Fnu4HI GCNGC 5 cut(s) 304, 826, 894, 1371, 1387
FokI GGATG 4 cut(s) 444, 939, 1315, 1376
FriOI GRGCYC 2 cut(s) 723, 1026
Fsp4HI GCNGC 5 cut(s) 304, 826, 894, 1371, 1387
FspBI CTAG 7 cut(s) 116, 536, 758, 959, 968, 1367, 1376
GluI GCNGC 5 cut(s) 304, 826, 894, 1371, 1387
GsuI CTGGAG 1 cut(s) 64
HaeIII GGCC 4 cut(s) 404, 762, 858, 1024
HapII CCGG 1 cut(s) 745
Hin1II CATG 8 cut(s) 28, 166, 236, 466, 643, 1021, 1127, 1291
HincII GTYRAC 2 cut(s) 251, 689
HindII GTYRAC 2 cut(s) 251, 689
HindIII AAGCTT 1 cut(s) 269
HinfI GANTC 5 cut(s) 787, 981, 1013, 1076, 1109
HpaII CCGG 1 cut(s) 745
HphI GGTGA 1 cut(s) 1078
Hpy166II GTNNAC 3 cut(s) 251, 689, 1404
Hpy188I TCNGA 1 cut(s) 835
Hpy8I GTNNAC 3 cut(s) 251, 689, 1404
HpyAV CCTTC 4 cut(s) 352, 469, 624, 1144
HpyCH4III ACNGT 3 cut(s) 447, 570, 1238
HpyCH4V TGCA 5 cut(s) 275, 325, 515, 828, 1127
HpyF3I CTNAG 4 cut(s) 120, 167, 424, 1145
Hsp92II CATG 8 cut(s) 28, 166, 236, 466, 643, 1021, 1127, 1291
Kpn2I TCCGGA 1 cut(s) 744
Ksp22I TGATCA 1 cut(s) 1120
Kzo9I GATC 8 cut(s) 131, 144, 172, 330, 499, 900, 1120, 1321
LguI GCTCTTC 1 cut(s) 711
LmnI GCTCC 4 cut(s) 40, 45, 101, 883
Lsp1109I GCAGC 3 cut(s) 812, 905, 1382
LweI GCATC 2 cut(s) 57, 1398
MabI ACCWGGT 1 cut(s) 1397
MaeI CTAG 7 cut(s) 116, 536, 758, 959, 968, 1367, 1376
MaeIII GTNAC 2 cut(s) 1084, 1316
MalI GATC 8 cut(s) 133, 146, 174, 332, 501, 902, 1122, 1323
MboI GATC 8 cut(s) 131, 144, 172, 330, 499, 900, 1120, 1321
MboII GAAGA 8 cut(s) 26, 308, 329, 722, 728, 983, 1199, 1416
MfeI CAATTG 2 cut(s) 54, 216
MflI RGATCY 2 cut(s) 144, 900
MhlI GDGCHC 2 cut(s) 723, 1026
MlyI GAGTC 3 cut(s) 781, 1007, 1070
MmeI TCCRAC 1 cut(s) 607
MroI TCCGGA 1 cut(s) 744
MseI TTAA 5 cut(s) 581, 888, 908, 1137, 1382
MslI CAYNNNNRTG 2 cut(s) 23, 1128
MspCI CTTAAG 1 cut(s) 580
MspI CCGG 1 cut(s) 745
MspR9I CCNGG 6 cut(s) 693, 1106, 1300, 1339, 1349, 1399
MunI CAATTG 2 cut(s) 54, 216
MvaI CCWGG 6 cut(s) 693, 1106, 1300, 1339, 1349, 1399
NcoI CCATGG 1 cut(s) 1017
NdeI CATATG 1 cut(s) 1097
NdeII GATC 8 cut(s) 131, 144, 172, 330, 499, 900, 1120, 1321
NheI GCTAGC 1 cut(s) 115
NlaIII CATG 8 cut(s) 28, 166, 236, 466, 643, 1021, 1127, 1291
NlaIV GGNNCC 6 cut(s) 156, 763, 902, 1023, 1024, 1230
NmuCI GTSAC 2 cut(s) 1084, 1316
NspI RCATGY 2 cut(s) 166, 1291
PaeR7I CTCGAG 2 cut(s) 734, 797
PagI TCATGA 2 cut(s) 232, 639
PciI ACATGT 1 cut(s) 1287
PciSI GCTCTTC 1 cut(s) 711
PfeI GAWTC 2 cut(s) 981, 1109
PflMI CCANNNNNTGG 1 cut(s) 698
PfoI TCCNGGA 1 cut(s) 1104
PkrI GCNGC 5 cut(s) 305, 827, 895, 1372, 1388
PleI GAGTC 3 cut(s) 781, 1007, 1070
PpsI GAGTC 3 cut(s) 781, 1007, 1070
PpuMI RGGWCCY 1 cut(s) 387
PscI ACATGT 1 cut(s) 1287
Psp5II RGGWCCY 1 cut(s) 387
Psp6I CCWGG 6 cut(s) 691, 1104, 1298, 1337, 1347, 1397
PspEI GGTNACC 1 cut(s) 1084
PspGI CCWGG 6 cut(s) 691, 1104, 1298, 1337, 1347, 1397
PspN4I GGNNCC 6 cut(s) 156, 763, 902, 1023, 1024, 1230
PspOMI GGGCCC 1 cut(s) 1022
PspPI GGNCC 5 cut(s) 387, 403, 761, 1022, 1023
PspPPI RGGWCCY 1 cut(s) 387
PsuI RGATCY 2 cut(s) 144, 900
RsaI GTAC 2 cut(s) 1219, 1403
RsaNI GTAC 2 cut(s) 1218, 1402
RseI CAYNNNNRTG 2 cut(s) 23, 1128
SapI GCTCTTC 1 cut(s) 711
SaqAI TTAA 5 cut(s) 581, 888, 908, 1137, 1382
SatI GCNGC 5 cut(s) 304, 826, 894, 1371, 1387
Sau3AI GATC 8 cut(s) 131, 144, 172, 330, 499, 900, 1120, 1321
Sau96I GGNCC 5 cut(s) 387, 403, 761, 1022, 1023
SchI GAGTC 3 cut(s) 781, 1007, 1070
ScrFI CCNGG 6 cut(s) 693, 1106, 1300, 1339, 1349, 1399
SduI GDGCHC 2 cut(s) 723, 1026
SexAI ACCWGGT 1 cut(s) 1397
SfaNI GCATC 2 cut(s) 57, 1398
SfcI CTRYAG 1 cut(s) 1005
Sfr274I CTCGAG 2 cut(s) 734, 797
SinI GGWCC 1 cut(s) 387
SlaI CTCGAG 2 cut(s) 734, 797
SmiMI CAYNNNNRTG 2 cut(s) 23, 1128
SmlI CTYRAG 3 cut(s) 580, 734, 797
SmoI CTYRAG 3 cut(s) 580, 734, 797
SsiI CCGC 4 cut(s) 304, 609, 871, 1386
SspMI CTAG 7 cut(s) 116, 536, 758, 959, 968, 1367, 1376
StyD4I CCNGG 6 cut(s) 691, 1104, 1298, 1337, 1347, 1397
StyI CCWWGG 5 cut(s) 203, 242, 1017, 1249, 1357
TaaI ACNGT 3 cut(s) 447, 570, 1238
TaqI TCGA 4 cut(s) 294, 615, 735, 798
TauI GCSGC 2 cut(s) 306, 1389
TfiI GAWTC 2 cut(s) 981, 1109
Tru1I TTAA 5 cut(s) 581, 888, 908, 1137, 1382
Tru9I TTAA 5 cut(s) 581, 888, 908, 1137, 1382
TscAI CASTG 3 cut(s) 282, 360, 1243
TseFI GTSAC 2 cut(s) 1084, 1316
TseI GCWGC 3 cut(s) 825, 893, 1370
Tsp45I GTSAC 2 cut(s) 1084, 1316
TspDTI ATGAA 6 cut(s) 27, 41, 45, 439, 451, 1200
TspGWI ACGGA 2 cut(s) 797, 860
TspRI CASTG 3 cut(s) 282, 360, 1243
Van91I CCANNNNNTGG 1 cut(s) 698
Vha464I CTTAAG 1 cut(s) 580
VpaK11BI GGWCC 1 cut(s) 387
XapI RAATTY 4 cut(s) 182, 262, 287, 1036
XceI RCATGY 2 cut(s) 166, 1291
XcmI CCANNNNNNNNNTGG 1 cut(s) 1076
XhoI CTCGAG 2 cut(s) 734, 797
XspI CTAG 7 cut(s) 116, 536, 758, 959, 968, 1367, 1376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.