FvH4_6g25140

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001605
Physical Location & Seq
Reverse (-)
19070190 .. 19071596
1407 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g25140.t1

Sequence Viewer

Length: 1407 bp
ATGGCAAGAAACGAAGAAATGTCTTCTATGAATGAAGCTCTGAAACATGGTATCAAAATCCATGAAGAGTCATCTAAGGAGGAGTTATTCAAAAACATAAAGGAAGCAAAATCGAGGCTAGAGCAGTTTCAAAGCTCGAAACCAAAGCTCCAAAAGGTTCCTGACATGCTACGAGATCACACAAGTTTTGAGAAATACTATGAGCCAAGGGCAGTAGCAATTGGTCCATTCCATCATGCTAAAGAAAGGTGTCAGCTGGCAGAGAAGTTCAAGCTTGCACTGACAGCAAAATTTGTCGAAGACAGTGACTGCACAGCTGAAGACTTGCACAAGATCATTGAGGACAACATCAACACACTAAGGGACTGCTATGATGAGGAAGCAACAAGGTCTTACACCGACAAGGCCCTCACTCAGTTGTTATTCCTAGATGGGTGTTCAACTTTACAGTTCATATACTCGTTTATATATAATGAGTTGCCATATTTCAAGATCAAGAGGGATCAGGTGGCTTTTGCACAACAGGATTTGTTCTTGCTTGAAAACCAGCTCCCTTACCAAGTTCTCAAGCTGTTGATGAACAAAAGTCACAAAAAGGAGGAGTTGAATAACGCAATCCATGATTTTGTTCGAAACAACATCATGGCAGCAACCAAAAAAACGCACAAACACAAAAGAGTGAGTCAACCAGAAGATCGCATAAACATAAACGAGGTTGAAGAGCCAACTCATCTTCTCGAGCTTCTCCGGACAGAAATGCTTGGTCCAAAAGATGAGGGCAACAAAATTTGTACAAATCAACGACAATCCTTCCGCAACATACAGGAGCTGAAAGCAGCAGGGATCCAGTTAAAGCCTAGTAAGACAAGCACATTGAAGGACATATCTTTCAAATCTCTAGGCTTTGTAGGATTCCTACATCTTCCACCAATATCAGTAGACGACTCCATGGGGCCTAAGTTCTTGAACTTGATAGCCTATGAAATGTGTCCTGATTTCGAAAATGATTTTGAGGTCACCTCTTACATATGCCTCTTGGATTCACTGATTGATCATGCAGATGATGTTAAAGAGCTACGGTCGGCAGACGTACTATACAACCTACTTGGGAGTGATGAAGAGGTGGCTCGACTTTTCAATGAGATAGGTACAGACTTGGTGCCTAACAGTGCAACATACTGCAATGTCAAAAACGAAATAGAAAAGCACTACAAGAGCAAGGGGAAAACCTGGATGGCTCAATTCTGTCACGAGCATTTTAGTAGCCCCTGGACTATCCTAGCTTTCCTTGGTGTTCTAGCAGCTCTGGGGTTAAGCAGCATTCAGACTTGGTACACCATCACTTCTCCGCCGTCCGCCTGCGATGCTGTATGCGAGTGCTTGAAGAAACAGCTGAAAATAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

469

Amino Acids

53.79

Weight (kDa)

5.87

Isoelectric Point (pI)

49.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 51 - 436 3.8e-90 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1159
AccI GTMKAC 1 cut(s) 939
AccIII TCCGGA 1 cut(s) 747
AciI CCGC 3 cut(s) 814, 1349, 1356
AclWI GGATC 3 cut(s) 510, 838, 851
AcsI RAATTY 2 cut(s) 290, 786
AcuI CTGAAG 1 cut(s) 339
AfaI GTAC 4 cut(s) 793, 1092, 1150, 1334
AjnI CCWGG 2 cut(s) 1229, 1268
AlwI GGATC 3 cut(s) 510, 838, 851
AlwNI CAGNNNCTG 2 cut(s) 309, 829
Ama87I CYCGRG 1 cut(s) 737
Aor13HI TCCGGA 1 cut(s) 747
AoxI GGCC 2 cut(s) 405, 953
ApeKI GCWGC 4 cut(s) 647, 836, 1301, 1317
ApoI RAATTY 2 cut(s) 290, 786
AspS9I GGNCC 4 cut(s) 224, 406, 764, 953
AsuHPI GGTGA 1 cut(s) 1009
AsuII TTCGAA 2 cut(s) 631, 999
AvaI CYCGRG 1 cut(s) 737
AvaII GGWCC 2 cut(s) 224, 764
BamHI GGATCC 1 cut(s) 843
BanI GGYRCC 1 cut(s) 1159
BauI CACGAG 1 cut(s) 1250
BbsI GAAGAC 3 cut(s) 15, 306, 327
BbvI GCAGC 4 cut(s) 659, 848, 1313, 1329
BccI CCATC 4 cut(s) 240, 425, 1228, 1346
BceAI ACGGC 1 cut(s) 1336
BciT130I CCWGG 2 cut(s) 1231, 1270
BclI TGATCA 1 cut(s) 1051
BfaI CTAG 6 cut(s) 119, 428, 858, 899, 1280, 1298
BisI GCNGC 4 cut(s) 648, 837, 1302, 1318
BlsI GCNGC 4 cut(s) 649, 838, 1303, 1319
Bme1390I CCNGG 2 cut(s) 1231, 1270
Bme18I GGWCC 2 cut(s) 224, 764
BmeT110I CYCGRG 1 cut(s) 737
BmgT120I GGNCC 4 cut(s) 224, 406, 764, 953
BmiI GGNNCC 4 cut(s) 159, 845, 954, 1161
BmrFI CCNGG 2 cut(s) 1231, 1270
BmsI GCATC 1 cut(s) 1354
BpiI GAAGAC 3 cut(s) 15, 306, 327
BplI GAGNNNNNCTC 2 cut(s) 1004, 1036
Bpu14I TTCGAA 2 cut(s) 631, 999
BpuEI CTTGAG 1 cut(s) 551
BsaJI CCNNGG 4 cut(s) 206, 948, 1268, 1288
BsaWI WCCGGW 1 cut(s) 747
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bse1I ACTGG 1 cut(s) 847
Bse3DI GCAATG 1 cut(s) 1189
BseAI TCCGGA 1 cut(s) 747
BseBI CCWGG 2 cut(s) 1231, 1270
BseDI CCNNGG 4 cut(s) 206, 948, 1268, 1288
BseGI GGATG 1 cut(s) 1239
BseMI GCAATG 1 cut(s) 1189
BseMII CTCAG 1 cut(s) 428
BseNI ACTGG 1 cut(s) 847
BseRI GAGGAG 2 cut(s) 95, 614
BseXI GCAGC 4 cut(s) 659, 848, 1313, 1329
BsgI GTGCAG 1 cut(s) 295
Bsh1285I CGRYCG 1 cut(s) 1082
BshFI GGCC 2 cut(s) 407, 955
BshNI GGYRCC 1 cut(s) 1159
BsiEI CGRYCG 1 cut(s) 1082
BsiHKCI CYCGRG 1 cut(s) 737
BsiSI CCGG 1 cut(s) 748
BslFI GGGAC 1 cut(s) 377
BsmFI GGGAC 1 cut(s) 377
BsmI GAATGC 1 cut(s) 1320
BsnI GGCC 2 cut(s) 407, 955
BsoBI CYCGRG 1 cut(s) 737
Bsp119I TTCGAA 2 cut(s) 631, 999
Bsp13I TCCGGA 1 cut(s) 747
Bsp1407I TGTACA 1 cut(s) 791
Bsp143I GATC 7 cut(s) 175, 333, 492, 502, 694, 843, 1051
Bsp19I CCATGG 1 cut(s) 948
BspACI CCGC 3 cut(s) 814, 1349, 1356
BspANI GGCC 2 cut(s) 407, 955
BspCNI CTCAG 1 cut(s) 427
BspEI TCCGGA 1 cut(s) 747
BspLI GGNNCC 4 cut(s) 159, 845, 954, 1161
BspPI GGATC 3 cut(s) 510, 838, 851
BspQI GCTCTTC 1 cut(s) 714
BspT104I TTCGAA 2 cut(s) 631, 999
BspT107I GGYRCC 1 cut(s) 1159
BsrDI GCAATG 1 cut(s) 1189
BsrGI TGTACA 1 cut(s) 791
BsrI ACTGG 1 cut(s) 847
BssECI CCNNGG 4 cut(s) 206, 948, 1268, 1288
BssMI GATC 7 cut(s) 175, 333, 492, 502, 694, 843, 1051
BssSI CACGAG 1 cut(s) 1250
BssT1I CCWWGG 3 cut(s) 206, 948, 1288
Bst2BI CACGAG 1 cut(s) 1250
Bst2UI CCWGG 2 cut(s) 1231, 1270
Bst4CI ACNGT 4 cut(s) 305, 450, 1080, 1169
Bst6I CTCTTC 3 cut(s) 60, 714, 1113
BstAUI TGTACA 1 cut(s) 791
BstBI TTCGAA 2 cut(s) 631, 999
BstC8I GCNNGC 3 cut(s) 258, 276, 1360
BstDEI CTNAG 4 cut(s) 75, 359, 414, 957
BstDSI CCRYGG 1 cut(s) 948
BstEII GGTNACC 1 cut(s) 1015
BstF5I GGATG 1 cut(s) 1239
BstKTI GATC 7 cut(s) 178, 336, 495, 505, 697, 846, 1054
BstMBI GATC 7 cut(s) 175, 333, 492, 502, 694, 843, 1051
BstMCI CGRYCG 1 cut(s) 1082
BstMWI GCNNNNNNNGC 2 cut(s) 284, 1364
BstNI CCWGG 2 cut(s) 1231, 1270
BstNSI RCATGY 1 cut(s) 169
BstPI GGTNACC 1 cut(s) 1015
BstSCI CCNGG 2 cut(s) 1229, 1268
BstV1I GCAGC 4 cut(s) 659, 848, 1313, 1329
BstV2I GAAGAC 3 cut(s) 15, 306, 327
BstX2I RGATCY 1 cut(s) 843
BstYI RGATCY 1 cut(s) 843
BsuRI GGCC 2 cut(s) 407, 955
BtgI CCRYGG 1 cut(s) 948
BtgZI GCGATG 1 cut(s) 1377
BtsCI GGATG 1 cut(s) 1239
BtsIMutI CAGTG 4 cut(s) 278, 310, 1043, 1174
Cac8I GCNNGC 3 cut(s) 258, 276, 1360
CaiI CAGNNNCTG 2 cut(s) 309, 829
Cfr13I GGNCC 4 cut(s) 224, 406, 764, 953
Csp6I GTAC 4 cut(s) 792, 1091, 1149, 1333
CviAII CATG 8 cut(s) 47, 62, 166, 236, 620, 643, 949, 1055
CviQI GTAC 4 cut(s) 792, 1091, 1149, 1333
DdeI CTNAG 4 cut(s) 75, 359, 414, 957
DpnI GATC 7 cut(s) 177, 335, 494, 504, 696, 845, 1053
DpnII GATC 7 cut(s) 175, 333, 492, 502, 694, 843, 1051
Eam1104I CTCTTC 3 cut(s) 60, 714, 1113
EarI CTCTTC 3 cut(s) 60, 714, 1113
EciI GGCGGA 2 cut(s) 1338, 1345
Eco130I CCWWGG 3 cut(s) 206, 948, 1288
Eco47I GGWCC 2 cut(s) 224, 764
Eco57I CTGAAG 1 cut(s) 339
Eco88I CYCGRG 1 cut(s) 737
Eco91I GGTNACC 1 cut(s) 1015
EcoO109I RGGNCCY 2 cut(s) 406, 953
EcoO65I GGTNACC 1 cut(s) 1015
EcoRII CCWGG 2 cut(s) 1229, 1268
EcoT14I CCWWGG 3 cut(s) 206, 948, 1288
ErhI CCWWGG 3 cut(s) 206, 948, 1288
FaeI CATG 8 cut(s) 50, 65, 169, 239, 623, 646, 952, 1058
FaqI GGGAC 1 cut(s) 377
FatI CATG 8 cut(s) 46, 61, 165, 235, 619, 642, 948, 1054
FauNDI CATATG 1 cut(s) 1028
FbaI TGATCA 1 cut(s) 1051
FblI GTMKAC 1 cut(s) 939
Fnu4HI GCNGC 4 cut(s) 648, 837, 1302, 1318
FokI GGATG 1 cut(s) 1246
Fsp4HI GCNGC 4 cut(s) 648, 837, 1302, 1318
FspBI CTAG 6 cut(s) 119, 428, 858, 899, 1280, 1298
GluI GCNGC 4 cut(s) 648, 837, 1302, 1318
HaeIII GGCC 2 cut(s) 407, 955
HapII CCGG 1 cut(s) 748
Hin1II CATG 8 cut(s) 50, 65, 169, 239, 623, 646, 952, 1058
HincII GTYRAC 1 cut(s) 686
HindII GTYRAC 1 cut(s) 686
HindIII AAGCTT 1 cut(s) 272
HinfI GANTC 5 cut(s) 68, 682, 912, 944, 1040
HpaII CCGG 1 cut(s) 748
HphI GGTGA 1 cut(s) 1009
Hpy166II GTNNAC 3 cut(s) 686, 940, 1335
Hpy188I TCNGA 2 cut(s) 42, 1326
Hpy188III TCNNGA 8 cut(s) 161, 490, 496, 737, 748, 964, 992, 1250
Hpy8I GTNNAC 3 cut(s) 686, 940, 1335
HpyAV CCTTC 2 cut(s) 820, 871
HpyCH4III ACNGT 4 cut(s) 305, 450, 1080, 1169
HpyCH4IV ACGT 1 cut(s) 1089
HpyCH4V TGCA 7 cut(s) 278, 312, 328, 518, 1058, 1172, 1182
HpyF10VI GCNNNNNNNGC 2 cut(s) 284, 1364
HpyF3I CTNAG 4 cut(s) 75, 359, 414, 957
HpySE526I ACGT 1 cut(s) 1089
Hsp92II CATG 8 cut(s) 50, 65, 169, 239, 623, 646, 952, 1058
Kpn2I TCCGGA 1 cut(s) 747
Ksp22I TGATCA 1 cut(s) 1051
Kzo9I GATC 7 cut(s) 175, 333, 492, 502, 694, 843, 1051
LguI GCTCTTC 1 cut(s) 714
LmnI GCTCC 3 cut(s) 153, 555, 826
Lsp1109I GCAGC 4 cut(s) 659, 848, 1313, 1329
LweI GCATC 1 cut(s) 1354
MaeI CTAG 6 cut(s) 119, 428, 858, 899, 1280, 1298
MaeII ACGT 1 cut(s) 1089
MaeIII GTNAC 4 cut(s) 305, 587, 1015, 1247
MalI GATC 7 cut(s) 177, 335, 494, 504, 696, 845, 1053
MboI GATC 7 cut(s) 175, 333, 492, 502, 694, 843, 1051
MfeI CAATTG 1 cut(s) 219
MflI RGATCY 1 cut(s) 843
MluCI AATT 4 cut(s) 219, 290, 786, 1241
MlyI GAGTC 3 cut(s) 77, 691, 938
MroI TCCGGA 1 cut(s) 747
MseI TTAA 3 cut(s) 851, 1068, 1313
MslI CAYNNNNRTG 1 cut(s) 1059
MspA1I CMGCKG 3 cut(s) 256, 317, 1393
MspI CCGG 1 cut(s) 748
MspR9I CCNGG 2 cut(s) 1231, 1270
MunI CAATTG 1 cut(s) 219
Mva1269I GAATGC 1 cut(s) 1320
MvaI CCWGG 2 cut(s) 1231, 1270
MwoI GCNNNNNNNGC 2 cut(s) 284, 1364
NcoI CCATGG 1 cut(s) 948
NdeI CATATG 1 cut(s) 1028
NdeII GATC 7 cut(s) 175, 333, 492, 502, 694, 843, 1051
NlaIII CATG 8 cut(s) 50, 65, 169, 239, 623, 646, 952, 1058
NlaIV GGNNCC 4 cut(s) 159, 845, 954, 1161
NmuCI GTSAC 4 cut(s) 305, 587, 1015, 1247
NspI RCATGY 1 cut(s) 169
NspV TTCGAA 2 cut(s) 631, 999
PaeR7I CTCGAG 1 cut(s) 737
PciSI GCTCTTC 1 cut(s) 714
PctI GAATGC 1 cut(s) 1320
PfeI GAWTC 2 cut(s) 912, 1040
PkrI GCNGC 4 cut(s) 649, 838, 1303, 1319
PleI GAGTC 3 cut(s) 76, 690, 938
PpsI GAGTC 3 cut(s) 76, 690, 938
Psp6I CCWGG 2 cut(s) 1229, 1268
PspEI GGTNACC 1 cut(s) 1015
PspGI CCWGG 2 cut(s) 1229, 1268
PspN4I GGNNCC 4 cut(s) 159, 845, 954, 1161
PspPI GGNCC 4 cut(s) 224, 406, 764, 953
PstNI CAGNNNCTG 2 cut(s) 309, 829
PsuI RGATCY 1 cut(s) 843
PvuII CAGCTG 3 cut(s) 256, 317, 1393
RsaI GTAC 4 cut(s) 793, 1092, 1150, 1334
RsaNI GTAC 4 cut(s) 792, 1091, 1149, 1333
RseI CAYNNNNRTG 1 cut(s) 1059
SapI GCTCTTC 1 cut(s) 714
SaqAI TTAA 3 cut(s) 851, 1068, 1313
SatI GCNGC 4 cut(s) 648, 837, 1302, 1318
Sau3AI GATC 7 cut(s) 175, 333, 492, 502, 694, 843, 1051
Sau96I GGNCC 4 cut(s) 224, 406, 764, 953
SchI GAGTC 3 cut(s) 77, 691, 938
ScrFI CCNGG 2 cut(s) 1231, 1270
SfaNI GCATC 1 cut(s) 1354
Sfr274I CTCGAG 1 cut(s) 737
SfuI TTCGAA 2 cut(s) 631, 999
SinI GGWCC 2 cut(s) 224, 764
SlaI CTCGAG 1 cut(s) 737
SmiMI CAYNNNNRTG 1 cut(s) 1059
SmlI CTYRAG 2 cut(s) 566, 737
SmoI CTYRAG 2 cut(s) 566, 737
Sse9I AATT 4 cut(s) 219, 290, 786, 1241
SsiI CCGC 3 cut(s) 814, 1349, 1356
SspMI CTAG 6 cut(s) 119, 428, 858, 899, 1280, 1298
StyD4I CCNGG 2 cut(s) 1229, 1268
StyI CCWWGG 3 cut(s) 206, 948, 1288
TaaI ACNGT 4 cut(s) 305, 450, 1080, 1169
TaiI ACGT 1 cut(s) 1092
TaqI TCGA 7 cut(s) 113, 137, 297, 631, 738, 999, 1129
TasI AATT 4 cut(s) 219, 290, 786, 1241
TatI WGTACW 1 cut(s) 791
TfiI GAWTC 2 cut(s) 912, 1040
Tru1I TTAA 3 cut(s) 851, 1068, 1313
Tru9I TTAA 3 cut(s) 851, 1068, 1313
TscAI CASTG 4 cut(s) 285, 310, 1050, 1174
TseFI GTSAC 4 cut(s) 305, 587, 1015, 1247
TseI GCWGC 4 cut(s) 647, 836, 1301, 1317
Tsp45I GTSAC 4 cut(s) 305, 587, 1015, 1247
TspDTI ATGAA 7 cut(s) 44, 48, 78, 442, 593, 996, 1131
TspRI CASTG 4 cut(s) 285, 310, 1050, 1174
VpaK11BI GGWCC 2 cut(s) 224, 764
XapI RAATTY 2 cut(s) 290, 786
XceI RCATGY 1 cut(s) 169
XhoI CTCGAG 1 cut(s) 737
XmiI GTMKAC 1 cut(s) 939
XspI CTAG 6 cut(s) 119, 428, 858, 899, 1280, 1298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.