Rh2CG303900

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001605
Physical Location & Seq
Reverse (-)
35721073 .. 35722452
1380 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG303900.1

Sequence Viewer

Length: 1380 bp
ATGGCTTCCATGAATGGAGCTCCTAGTCGGAGCATCAAAATCCTTAAGGAGTTCTCTAAGGATGAGTTGTTCAAACACATAAAGGGAGCAAAAGAAAGGCTAGCTCAGTTTCAGAGCTCAAAACCAAAGATCCAAAGGGTTCCCGACATGCTTAGAGATCAGTCAGATCACCGAAATTTCGAGAAATACTATGAGCCAAGGGCTGTAGCAATTGGTCCTTTCCATCATGATAAACCAAGGTGTCAACTGGCAGAGAAGTTCAAGCTTGCACTGGCAGAAAAATTTATCGAAGACAGCGGCCGTCAAGTTGAAGATTTGCACAAGATCATTGAGGACAACATCAACACACTAAAGGACTGCTACGATGAGGAAGCAACAAGGTCCTACACCGACGAGGCCCTCACAAACTTGTTATTCTTAGATGGATGTTCAACCTTACAGTTCATATACTCCTTCATGGAGAATAAGTTAGCAAGTTTCAACATCAAGAGAGATCAGGTGGCTTTTGCAGAACAGGATTTGTTCTTGCTAGAAAACCAACTCCCTTACCAAGTCCTCAAGCTGTTAATGAGCTTAAGTGCCAAAGAGGGGAACTTGAAGGCCGCAATCGATGGATTTGTTGGAAGGAACATCATGGCAGCAGAAAAAAAATGGAAATGGCACAAACACAAAAAAACAGGTCAACCAGGAGATAGTGTCATAAACATGGAAGAGCCCACTCATCTTCTCGAGCTTCTCCAGATAAAAATGCTAGGCAGCCCCGAATCTTTCCACCCCAAGAAGATGAATCCTGAAGATGGCCGACGATTATTCCGCAACATAAAGGAGCTTAAAGAAGCAGGTATCCATTTAAGATGTAGTAAGACAGGCACCTTGAGGGACATATCTTTTACTCATCCTCTAGGCTTTGTAGGATTCCTATATCTTCCACCAATATCAGTAGACGACTCCATGAGGCTCAAGTTCTTGAATTTGATAGCCTATGAAATGTGTCCTGATTCCCCCCAAAATGACTTGGTGGTCACCTCTTACATATACTTCCTGCGTTCACTGATTGATAATGCAGAAGATGTTAAACAGCTAAGGTCGGCAGGTGTACTACGCAACTTACTTGGGAATGATGAAGAGGTAGCTCAATTTTTTAATGAGATAGGTACTGATTTGGTGGCTAACCCCGAAACATACCTCAGTGTCCGTGCCGGATTAAATAATCACTGGGGAACCAAGTGGAAAACCAAGTTGAAAGTCTGGATGGCTCAATTCTATCAGGATCATTTCAGTAGCCCCTGGACTATCATGGCTTCATTGGGTGTTCTAGCAGCTCTGGGGTTAAGCGGCATCCAGACTTGGTACACAATACATCCTCCGACCACTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

459

Amino Acids

52.55

Weight (kDa)

7.68

Isoelectric Point (pI)

44.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 44 - 442 2.2e-87 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1082
AasI GACNNNNNNGTC 1 cut(s) 1019
Acc36I ACCTGC 2 cut(s) 830, 1082
AccB1I GGYRCC 1 cut(s) 869
AccI GTMKAC 1 cut(s) 942
AciI CCGC 4 cut(s) 297, 603, 814, 1335
AclWI GGATC 2 cut(s) 124, 1278
AcoI YGGCCR 2 cut(s) 298, 799
AcsI RAATTY 3 cut(s) 175, 281, 970
AcuI CTGAAG 1 cut(s) 813
AfaI GTAC 3 cut(s) 1098, 1156, 1352
AfiI CCNNNNNNNGG 2 cut(s) 588, 797
AflII CTTAAG 2 cut(s) 44, 574
AgsI TTSAA 8 cut(s) 73, 262, 311, 432, 481, 598, 970, 1243
AjnI CCWGG 2 cut(s) 685, 1286
AloI GAACNNNNNNTCC 2 cut(s) 53, 85
Alw21I GWGCWC 2 cut(s) 22, 119
AlwI GGATC 2 cut(s) 124, 1278
Ama87I CYCGRG 1 cut(s) 728
AoxI GGCC 4 cut(s) 298, 396, 600, 799
ApeKI GCWGC 3 cut(s) 638, 756, 1319
ApoI RAATTY 3 cut(s) 175, 281, 970
AspS9I GGNCC 3 cut(s) 215, 381, 397
AsuHPI GGTGA 2 cut(s) 161, 1015
AsuNHI GCTAGC 1 cut(s) 100
AvaI CYCGRG 1 cut(s) 728
AvaII GGWCC 2 cut(s) 215, 381
BanI GGYRCC 1 cut(s) 869
BanII GRGCYC 3 cut(s) 22, 119, 717
BbsI GAAGAC 1 cut(s) 297
Bbv12I GWGCWC 2 cut(s) 22, 119
BbvI GCAGC 3 cut(s) 650, 768, 1331
BccI CCATC 5 cut(s) 231, 416, 605, 791, 1246
BceAI ACGGC 1 cut(s) 285
BciT130I CCWGG 2 cut(s) 687, 1288
BciVI GTATCC 1 cut(s) 854
BfaI CTAG 6 cut(s) 24, 101, 530, 752, 902, 1316
BfmI CTRYAG 1 cut(s) 204
BfrI CTTAAG 2 cut(s) 44, 574
BfuAI ACCTGC 2 cut(s) 830, 1082
BfuI GTATCC 1 cut(s) 854
BisI GCNGC 6 cut(s) 298, 603, 639, 757, 1320, 1336
BlsI GCNGC 6 cut(s) 299, 604, 640, 758, 1321, 1337
Bme1390I CCNGG 2 cut(s) 687, 1288
Bme18I GGWCC 2 cut(s) 215, 381
BmeT110I CYCGRG 1 cut(s) 728
BmgT120I GGNCC 3 cut(s) 215, 381, 397
BmiI GGNNCC 3 cut(s) 141, 871, 1222
BmrFI CCNGG 2 cut(s) 687, 1288
BmrI ACTGGG 1 cut(s) 1225
BmsI GCATC 2 cut(s) 42, 1347
BmtI GCTAGC 1 cut(s) 104
BmuI ACTGGG 1 cut(s) 1225
BpiI GAAGAC 1 cut(s) 297
BpmI CTGGAG 1 cut(s) 722
Bpu10I CCTNAGC 1 cut(s) 1082
BpuEI CTTGAG 3 cut(s) 542, 895, 944
Bsa29I ATCGAT 1 cut(s) 609
BsaJI CCNNGG 3 cut(s) 197, 236, 1286
BsaXI ACNNNNNCTCC 4 cut(s) 452, 482, 681, 711
Bsc4I CCNNNNNNNGG 2 cut(s) 588, 797
Bse1I ACTGG 3 cut(s) 252, 276, 1220
BseBI CCWGG 2 cut(s) 687, 1288
BseCI ATCGAT 1 cut(s) 609
BseDI CCNNGG 3 cut(s) 197, 236, 1286
BseGI GGATG 6 cut(s) 67, 431, 895, 1257, 1338, 1360
BseLI CCNNNNNNNGG 2 cut(s) 588, 797
BseMII CTCAG 2 cut(s) 119, 1201
BseNI ACTGG 3 cut(s) 252, 276, 1220
BseX3I CGGCCG 1 cut(s) 298
BseXI GCAGC 3 cut(s) 650, 768, 1331
Bsh1285I CGRYCG 1 cut(s) 301
BshFI GGCC 4 cut(s) 300, 398, 602, 801
BshNI GGYRCC 1 cut(s) 869
BshVI ATCGAT 1 cut(s) 609
BsiEI CGRYCG 1 cut(s) 301
BsiHKAI GWGCWC 2 cut(s) 22, 119
BsiHKCI CYCGRG 1 cut(s) 728
BsiSI CCGG 1 cut(s) 1200
BslFI GGGAC 1 cut(s) 893
BslI CCNNNNNNNGG 2 cut(s) 588, 797
BsmFI GGGAC 1 cut(s) 893
BsnI GGCC 4 cut(s) 300, 398, 602, 801
BsoBI CYCGRG 1 cut(s) 728
Bsp1286I GDGCHC 3 cut(s) 22, 119, 717
Bsp143I GATC 6 cut(s) 129, 157, 166, 324, 493, 1270
BspACI CCGC 4 cut(s) 297, 603, 814, 1335
BspANI GGCC 4 cut(s) 300, 398, 602, 801
BspCNI CTCAG 2 cut(s) 118, 1200
BspDI ATCGAT 1 cut(s) 609
BspHI TCATGA 1 cut(s) 226
BspLI GGNNCC 3 cut(s) 141, 871, 1222
BspMI ACCTGC 2 cut(s) 830, 1082
BspOI GCTAGC 1 cut(s) 104
BspPI GGATC 2 cut(s) 124, 1278
BspQI GCTCTTC 1 cut(s) 705
BspT107I GGYRCC 1 cut(s) 869
BspTI CTTAAG 2 cut(s) 44, 574
BsrI ACTGG 3 cut(s) 252, 276, 1220
BssECI CCNNGG 3 cut(s) 197, 236, 1286
BssMI GATC 6 cut(s) 129, 157, 166, 324, 493, 1270
BssT1I CCWWGG 2 cut(s) 197, 236
Bst2UI CCWGG 2 cut(s) 687, 1288
Bst4CI ACNGT 1 cut(s) 441
Bst6I CTCTTC 2 cut(s) 705, 1119
BstAFI CTTAAG 2 cut(s) 44, 574
BstC8I GCNNGC 2 cut(s) 102, 267
BstDEI CTNAG 6 cut(s) 57, 105, 152, 418, 1082, 1187
BstEII GGTNACC 1 cut(s) 1021
BstF5I GGATG 6 cut(s) 67, 431, 895, 1257, 1338, 1360
BstKTI GATC 6 cut(s) 132, 160, 169, 327, 496, 1273
BstMBI GATC 6 cut(s) 129, 157, 166, 324, 493, 1270
BstMCI CGRYCG 1 cut(s) 301
BstNI CCWGG 2 cut(s) 687, 1288
BstNSI RCATGY 1 cut(s) 151
BstPI GGTNACC 1 cut(s) 1021
BstSCI CCNGG 2 cut(s) 685, 1286
BstSFI CTRYAG 1 cut(s) 204
BstV1I GCAGC 3 cut(s) 650, 768, 1331
BstV2I GAAGAC 1 cut(s) 297
BstX2I RGATCY 1 cut(s) 129
BstYI RGATCY 1 cut(s) 129
BstZI CGGCCG 1 cut(s) 298
Bsu15I ATCGAT 1 cut(s) 609
BsuI GTATCC 1 cut(s) 854
BsuRI GGCC 4 cut(s) 300, 398, 602, 801
BsuTUI ATCGAT 1 cut(s) 609
BtsCI GGATG 6 cut(s) 67, 431, 895, 1257, 1338, 1360
BtsI GCAGTG 1 cut(s) 1371
BtsIMutI CAGTG 5 cut(s) 269, 1049, 1195, 1213, 1371
BveI ACCTGC 2 cut(s) 830, 1082
Cac8I GCNNGC 2 cut(s) 102, 267
CciI TCATGA 1 cut(s) 226
Cfr13I GGNCC 3 cut(s) 215, 381, 397
ClaI ATCGAT 1 cut(s) 609
Csp6I GTAC 3 cut(s) 1097, 1155, 1351
CviAII CATG 8 cut(s) 10, 148, 227, 457, 634, 706, 952, 1297
CviQI GTAC 3 cut(s) 1097, 1155, 1351
DdeI CTNAG 6 cut(s) 57, 105, 152, 418, 1082, 1187
DpnI GATC 6 cut(s) 131, 159, 168, 326, 495, 1272
DpnII GATC 6 cut(s) 129, 157, 166, 324, 493, 1270
DrdI GACNNNNNNGTC 1 cut(s) 1019
DseDI GACNNNNNNGTC 1 cut(s) 1019
EaeI YGGCCR 2 cut(s) 298, 799
EagI CGGCCG 1 cut(s) 298
Eam1104I CTCTTC 2 cut(s) 705, 1119
EarI CTCTTC 2 cut(s) 705, 1119
Ecl136II GAGCTC 2 cut(s) 20, 117
EclXI CGGCCG 1 cut(s) 298
Eco130I CCWWGG 2 cut(s) 197, 236
Eco24I GRGCYC 3 cut(s) 22, 119, 717
Eco47I GGWCC 2 cut(s) 215, 381
Eco52I CGGCCG 1 cut(s) 298
Eco53kI GAGCTC 2 cut(s) 20, 117
Eco57I CTGAAG 1 cut(s) 813
Eco88I CYCGRG 1 cut(s) 728
Eco91I GGTNACC 1 cut(s) 1021
EcoICRI GAGCTC 2 cut(s) 20, 117
EcoO109I RGGNCCY 2 cut(s) 381, 397
EcoO65I GGTNACC 1 cut(s) 1021
EcoRII CCWGG 2 cut(s) 685, 1286
EcoT14I CCWWGG 2 cut(s) 197, 236
EcoT38I GRGCYC 3 cut(s) 22, 119, 717
ErhI CCWWGG 2 cut(s) 197, 236
FaeI CATG 8 cut(s) 13, 151, 230, 460, 637, 709, 955, 1300
FaqI GGGAC 1 cut(s) 893
FatI CATG 8 cut(s) 9, 147, 226, 456, 633, 705, 951, 1296
FblI GTMKAC 1 cut(s) 942
Fnu4HI GCNGC 6 cut(s) 298, 603, 639, 757, 1320, 1336
FokI GGATG 6 cut(s) 74, 438, 882, 1264, 1325, 1347
FriOI GRGCYC 3 cut(s) 22, 119, 717
Fsp4HI GCNGC 6 cut(s) 298, 603, 639, 757, 1320, 1336
FspBI CTAG 6 cut(s) 24, 101, 530, 752, 902, 1316
GluI GCNGC 6 cut(s) 298, 603, 639, 757, 1320, 1336
GsuI CTGGAG 1 cut(s) 722
HaeIII GGCC 4 cut(s) 300, 398, 602, 801
HapII CCGG 1 cut(s) 1200
Hin1II CATG 8 cut(s) 13, 151, 230, 460, 637, 709, 955, 1300
HincII GTYRAC 2 cut(s) 245, 683
HindII GTYRAC 2 cut(s) 245, 683
HindIII AAGCTT 1 cut(s) 263
HinfI GANTC 5 cut(s) 764, 787, 915, 947, 998
HpaII CCGG 1 cut(s) 1200
HphI GGTGA 2 cut(s) 161, 1015
Hpy166II GTNNAC 6 cut(s) 245, 683, 943, 1049, 1097, 1353
Hpy188I TCNGA 4 cut(s) 30, 114, 166, 1368
Hpy8I GTNNAC 6 cut(s) 245, 683, 943, 1049, 1097, 1353
Hpy99I CGWCG 2 cut(s) 395, 807
HpyAV CCTTC 3 cut(s) 463, 592, 618
HpyCH4III ACNGT 1 cut(s) 441
HpyCH4V TGCA 4 cut(s) 269, 319, 509, 1064
HpyF3I CTNAG 6 cut(s) 57, 105, 152, 418, 1082, 1187
Hsp92II CATG 8 cut(s) 13, 151, 230, 460, 637, 709, 955, 1300
Kzo9I GATC 6 cut(s) 129, 157, 166, 324, 493, 1270
LguI GCTCTTC 1 cut(s) 705
LmnI GCTCC 5 cut(s) 17, 25, 30, 86, 826
Lsp1109I GCAGC 3 cut(s) 650, 768, 1331
LweI GCATC 2 cut(s) 42, 1347
MaeI CTAG 6 cut(s) 24, 101, 530, 752, 902, 1316
MaeIII GTNAC 1 cut(s) 1021
MalI GATC 6 cut(s) 131, 159, 168, 326, 495, 1272
MboI GATC 6 cut(s) 129, 157, 166, 324, 493, 1270
MboII GAAGA 9 cut(s) 302, 323, 716, 722, 793, 806, 917, 1079, 1136
MfeI CAATTG 1 cut(s) 210
MflI RGATCY 1 cut(s) 129
MhlI GDGCHC 3 cut(s) 22, 119, 717
MluCI AATT 6 cut(s) 175, 210, 281, 970, 1136, 1259
MlyI GAGTC 1 cut(s) 941
MmeI TCCRAC 2 cut(s) 8, 601
MseI TTAA 9 cut(s) 45, 566, 575, 831, 851, 1074, 1143, 1205, 1331
MslI CAYNNNNRTG 1 cut(s) 704
MspA1I CMGCKG 1 cut(s) 297
MspCI CTTAAG 2 cut(s) 44, 574
MspI CCGG 1 cut(s) 1200
MspR9I CCNGG 2 cut(s) 687, 1288
MunI CAATTG 1 cut(s) 210
MvaI CCWGG 2 cut(s) 687, 1288
NdeII GATC 6 cut(s) 129, 157, 166, 324, 493, 1270
NheI GCTAGC 1 cut(s) 100
NlaIII CATG 8 cut(s) 13, 151, 230, 460, 637, 709, 955, 1300
NlaIV GGNNCC 3 cut(s) 141, 871, 1222
NmuCI GTSAC 1 cut(s) 1021
NspI RCATGY 1 cut(s) 151
PaeR7I CTCGAG 1 cut(s) 728
PagI TCATGA 1 cut(s) 226
PaqCI CACCTGC 1 cut(s) 1082
PciSI GCTCTTC 1 cut(s) 705
PfeI GAWTC 4 cut(s) 764, 787, 915, 998
PkrI GCNGC 6 cut(s) 299, 604, 640, 758, 1321, 1337
PleI GAGTC 1 cut(s) 941
PpsI GAGTC 1 cut(s) 941
PpuMI RGGWCCY 1 cut(s) 381
Psp124BI GAGCTC 2 cut(s) 22, 119
Psp5II RGGWCCY 1 cut(s) 381
Psp6I CCWGG 2 cut(s) 685, 1286
PspEI GGTNACC 1 cut(s) 1021
PspGI CCWGG 2 cut(s) 685, 1286
PspN4I GGNNCC 3 cut(s) 141, 871, 1222
PspPI GGNCC 3 cut(s) 215, 381, 397
PspPPI RGGWCCY 1 cut(s) 381
PsuI RGATCY 1 cut(s) 129
RsaI GTAC 3 cut(s) 1098, 1156, 1352
RsaNI GTAC 3 cut(s) 1097, 1155, 1351
RseI CAYNNNNRTG 1 cut(s) 704
SacI GAGCTC 2 cut(s) 22, 119
SapI GCTCTTC 1 cut(s) 705
SaqAI TTAA 9 cut(s) 45, 566, 575, 831, 851, 1074, 1143, 1205, 1331
SatI GCNGC 6 cut(s) 298, 603, 639, 757, 1320, 1336
Sau3AI GATC 6 cut(s) 129, 157, 166, 324, 493, 1270
Sau96I GGNCC 3 cut(s) 215, 381, 397
SchI GAGTC 1 cut(s) 941
ScrFI CCNGG 2 cut(s) 687, 1288
SduI GDGCHC 3 cut(s) 22, 119, 717
SfaNI GCATC 2 cut(s) 42, 1347
SfcI CTRYAG 1 cut(s) 204
Sfr274I CTCGAG 1 cut(s) 728
SinI GGWCC 2 cut(s) 215, 381
SlaI CTCGAG 1 cut(s) 728
SmiMI CAYNNNNRTG 1 cut(s) 704
SmlI CTYRAG 6 cut(s) 44, 557, 574, 728, 874, 959
SmoI CTYRAG 6 cut(s) 44, 557, 574, 728, 874, 959
Sse9I AATT 6 cut(s) 175, 210, 281, 970, 1136, 1259
SsiI CCGC 4 cut(s) 297, 603, 814, 1335
SspMI CTAG 6 cut(s) 24, 101, 530, 752, 902, 1316
SstI GAGCTC 2 cut(s) 22, 119
StyD4I CCNGG 2 cut(s) 685, 1286
StyI CCWWGG 2 cut(s) 197, 236
TaaI ACNGT 1 cut(s) 441
TaqI TCGA 4 cut(s) 180, 288, 609, 729
TasI AATT 6 cut(s) 175, 210, 281, 970, 1136, 1259
TatI WGTACW 1 cut(s) 1096
TauI GCSGC 3 cut(s) 300, 605, 1338
TfiI GAWTC 4 cut(s) 764, 787, 915, 998
Tru1I TTAA 9 cut(s) 45, 566, 575, 831, 851, 1074, 1143, 1205, 1331
Tru9I TTAA 9 cut(s) 45, 566, 575, 831, 851, 1074, 1143, 1205, 1331
TscAI CASTG 5 cut(s) 276, 1056, 1195, 1220, 1378
TseFI GTSAC 1 cut(s) 1021
TseI GCWGC 3 cut(s) 638, 756, 1319
Tsp45I GTSAC 1 cut(s) 1021
TspDTI ATGAA 7 cut(s) 26, 433, 445, 800, 999, 1137, 1293
TspGWI ACGGA 1 cut(s) 1184
TspRI CASTG 5 cut(s) 276, 1056, 1195, 1220, 1378
Vha464I CTTAAG 2 cut(s) 44, 574
VpaK11BI GGWCC 2 cut(s) 215, 381
XapI RAATTY 3 cut(s) 175, 281, 970
XceI RCATGY 1 cut(s) 151
XhoI CTCGAG 1 cut(s) 728
XmiI GTMKAC 1 cut(s) 942
XspI CTAG 6 cut(s) 24, 101, 530, 752, 902, 1316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.