Rh2DG339500

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001605
Physical Location & Seq
Reverse (-)
43898509 .. 43899438
930 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG339500.1

Sequence Viewer

Length: 930 bp
ATGGCTTCCATGAATGAAACTCCAAGTCGGAGCATCACAATCCTTGAACAGTCATCTAAGGAGAAGTTGTTCAAAAACATAAAGGAAGCAGAAGAAAGGCTAGCTCAGCCTCAGTCTCAAAGCTCAAAACCAAAGATCCAAAGGGTTCCTGACATGCTCCGAGATCACCGAAAGTTTGAGAAATACTATGAGCCAAGGGCAGTAGCAATTGGTCCTTTCCATCATAATAAAGCAAGGTGTCAGCTGGCAGAGAAGTTCAAGCCTGCACTGGCAGCAAAATTTATCAAAGAAAGTGGCCGTCAAGCTGAAGCTTTGCACAAGGTCATTGAGGACAACATCAGCACACTAAAGGACTGCTACAATGAGGAAGCAACAAGGTCCTACACCGACGAGGCCCTCACAGACTTGTTATTCTTAGATGGATGTTCAACCCTACAGTTCATATACTCCTTCATGCACCATGAGTTAGCAAGTTTCAAGATCAAGAGAGATCAGGTGGCTTTTGCAGAACAAGATTTGTTCTTGCTAGAAAACCAACTCCCTTACCAAGTCCTCGAGTTGTTGATGCAGAAAAGTGACAAACAGGCGGACTTGAAGACCGCAATCGATGATTTTGTTAGAGAGACAGCAGACAAAAATCCAAAAAGGCACCAACACAAAAGAACACGTCCACTAGGAGGTACATCCATAAACATGGAAAAGCCGCCCACTCATCTTTTAGAGCTTCTCCGAACAGAAATGCTAGGTCCCCCAAAATCTGACCGCCCCAAGAAGAAAAAACATAAAGATCGCCGACAATCATTCCGCAACATACAGGAGCTTAAAGCAGCAGGGATCCATTTAAAGCCTAGTAAGGGAAGAACCTTGAGGGACATATCTTTTACTTCTCTAGGCTTTCTAGGATTCCTAAATCTTCCACCAATTCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

309

Amino Acids

35.72

Weight (kDa)

9.57

Isoelectric Point (pI)

50.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 46 - 308 6.6e-48 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 648
AciI CCGC 5 cut(s) 587, 600, 704, 763, 805
AclWI GGATC 3 cut(s) 130, 829, 842
AcoI YGGCCR 1 cut(s) 295
AcsI RAATTY 1 cut(s) 278
AcuI CTGAAG 1 cut(s) 327
AfaI GTAC 1 cut(s) 682
AfiI CCNNNNNNNGG 2 cut(s) 677, 854
AflIII ACRYGT 1 cut(s) 665
AgsI TTSAA 6 cut(s) 47, 73, 259, 429, 478, 595
AjiI CACGTC 1 cut(s) 668
AloI GAACNNNNNNTCC 2 cut(s) 53, 85
AluBI AGCT 7 cut(s) 104, 123, 244, 305, 311, 724, 820
AluI AGCT 7 cut(s) 104, 123, 244, 305, 311, 724, 820
Alw26I GTCTC 2 cut(s) 120, 617
AlwI GGATC 3 cut(s) 130, 829, 842
Ama87I CYCGRG 1 cut(s) 554
AoxI GGCC 2 cut(s) 295, 393
ApeKI GCWGC 2 cut(s) 272, 827
ApoI RAATTY 1 cut(s) 278
Asp700I GAANNNNTTC 1 cut(s) 68
AspS9I GGNCC 4 cut(s) 212, 378, 394, 746
AsuHPI GGTGA 1 cut(s) 158
AsuNHI GCTAGC 1 cut(s) 100
AvaI CYCGRG 1 cut(s) 554
AvaII GGWCC 3 cut(s) 212, 378, 746
BamHI GGATCC 1 cut(s) 834
BanI GGYRCC 1 cut(s) 648
BbsI GAAGAC 1 cut(s) 602
BbvI GCAGC 2 cut(s) 284, 839
BccI CCATC 2 cut(s) 228, 413
BceAI ACGGC 1 cut(s) 282
BcoDI GTCTC 2 cut(s) 120, 617
BfaI CTAG 7 cut(s) 101, 527, 674, 743, 849, 890, 899
BfmI CTRYAG 1 cut(s) 434
BisI GCNGC 3 cut(s) 273, 704, 828
BlpI GCTNAGC 1 cut(s) 105
BlsI GCNGC 3 cut(s) 274, 705, 829
Bme18I GGWCC 3 cut(s) 212, 378, 746
BmeT110I CYCGRG 1 cut(s) 554
BmgBI CACGTC 1 cut(s) 668
BmgT120I GGNCC 4 cut(s) 212, 378, 394, 746
BmiI GGNNCC 4 cut(s) 147, 650, 748, 836
BmsI GCATC 2 cut(s) 42, 555
BmtI GCTAGC 1 cut(s) 104
BpiI GAAGAC 1 cut(s) 602
Bpu1102I GCTNAGC 1 cut(s) 105
BpuEI CTTGAG 1 cut(s) 886
Bsa29I ATCGAT 1 cut(s) 606
BsaJI CCNNGG 1 cut(s) 194
BsaXI ACNNNNNCTCC 2 cut(s) 53, 83
Bsc4I CCNNNNNNNGG 2 cut(s) 677, 854
Bse1I ACTGG 1 cut(s) 273
BseCI ATCGAT 1 cut(s) 606
BseDI CCNNGG 1 cut(s) 194
BseGI GGATG 2 cut(s) 428, 683
BseLI CCNNNNNNNGG 2 cut(s) 677, 854
BseMII CTCAG 2 cut(s) 119, 125
BseNI ACTGG 1 cut(s) 273
BseXI GCAGC 2 cut(s) 284, 839
BsgI GTGCAG 1 cut(s) 249
BshFI GGCC 2 cut(s) 297, 395
BshNI GGYRCC 1 cut(s) 648
BshVI ATCGAT 1 cut(s) 606
BsiHKCI CYCGRG 1 cut(s) 554
BslFI GGGAC 2 cut(s) 732, 884
BslI CCNNNNNNNGG 2 cut(s) 677, 854
BsmAI GTCTC 2 cut(s) 120, 617
BsmFI GGGAC 2 cut(s) 732, 884
BsnI GGCC 2 cut(s) 297, 395
BsoBI CYCGRG 1 cut(s) 554
Bsp143I GATC 6 cut(s) 135, 163, 480, 490, 787, 834
Bsp1720I GCTNAGC 1 cut(s) 105
BspACI CCGC 5 cut(s) 587, 600, 704, 763, 805
BspANI GGCC 2 cut(s) 297, 395
BspCNI CTCAG 2 cut(s) 118, 124
BspDI ATCGAT 1 cut(s) 606
BspLI GGNNCC 4 cut(s) 147, 650, 748, 836
BspOI GCTAGC 1 cut(s) 104
BspPI GGATC 3 cut(s) 130, 829, 842
BspT107I GGYRCC 1 cut(s) 648
BsrI ACTGG 1 cut(s) 273
BssECI CCNNGG 1 cut(s) 194
BssMI GATC 6 cut(s) 135, 163, 480, 490, 787, 834
BssT1I CCWWGG 1 cut(s) 194
Bst4CI ACNGT 2 cut(s) 51, 438
BstC8I GCNNGC 3 cut(s) 102, 246, 264
BstDEI CTNAG 4 cut(s) 57, 105, 111, 415
BstF5I GGATG 2 cut(s) 428, 683
BstKTI GATC 6 cut(s) 138, 166, 483, 493, 790, 837
BstMAI GTCTC 2 cut(s) 120, 617
BstMBI GATC 6 cut(s) 135, 163, 480, 490, 787, 834
BstMWI GCNNNNNNNGC 2 cut(s) 106, 272
BstNSI RCATGY 1 cut(s) 157
BstSFI CTRYAG 1 cut(s) 434
BstV1I GCAGC 2 cut(s) 284, 839
BstV2I GAAGAC 1 cut(s) 602
BstX2I RGATCY 2 cut(s) 135, 834
BstXI CCANNNNNNTGG 1 cut(s) 694
BstYI RGATCY 2 cut(s) 135, 834
Bsu15I ATCGAT 1 cut(s) 606
BsuRI GGCC 2 cut(s) 297, 395
BsuTUI ATCGAT 1 cut(s) 606
BtrI CACGTC 1 cut(s) 668
BtsCI GGATG 2 cut(s) 428, 683
BtsIMutI CAGTG 1 cut(s) 266
Cac8I GCNNGC 3 cut(s) 102, 246, 264
Cfr13I GGNCC 4 cut(s) 212, 378, 394, 746
ClaI ATCGAT 1 cut(s) 606
Csp6I GTAC 1 cut(s) 681
CspCI CAANNNNNGTGG 2 cut(s) 274, 309
CviAII CATG 5 cut(s) 10, 154, 454, 461, 694
CviQI GTAC 1 cut(s) 681
DdeI CTNAG 4 cut(s) 57, 105, 111, 415
DpnI GATC 6 cut(s) 137, 165, 482, 492, 789, 836
DpnII GATC 6 cut(s) 135, 163, 480, 490, 787, 834
DraI TTTAAA 1 cut(s) 843
EaeI YGGCCR 1 cut(s) 295
EciI GGCGGA 1 cut(s) 602
Eco130I CCWWGG 1 cut(s) 194
Eco47I GGWCC 3 cut(s) 212, 378, 746
Eco57I CTGAAG 1 cut(s) 327
Eco88I CYCGRG 1 cut(s) 554
EcoO109I RGGNCCY 3 cut(s) 378, 394, 746
EcoT14I CCWWGG 1 cut(s) 194
ErhI CCWWGG 1 cut(s) 194
FaeI CATG 5 cut(s) 13, 157, 457, 464, 697
FaqI GGGAC 2 cut(s) 732, 884
FatI CATG 5 cut(s) 9, 153, 453, 460, 693
Fnu4HI GCNGC 3 cut(s) 273, 704, 828
FokI GGATG 2 cut(s) 435, 670
Fsp4HI GCNGC 3 cut(s) 273, 704, 828
FspBI CTAG 7 cut(s) 101, 527, 674, 743, 849, 890, 899
GluI GCNGC 3 cut(s) 273, 704, 828
HaeIII GGCC 2 cut(s) 297, 395
Hin1II CATG 5 cut(s) 13, 157, 457, 464, 697
HindIII AAGCTT 1 cut(s) 309
HinfI GANTC 1 cut(s) 903
HphI GGTGA 1 cut(s) 158
Hpy166II GTNNAC 1 cut(s) 671
Hpy188I TCNGA 4 cut(s) 30, 161, 731, 760
Hpy188III TCNNGA 3 cut(s) 149, 478, 484
Hpy8I GTNNAC 1 cut(s) 671
Hpy99I CGWCG 1 cut(s) 392
HpyAV CCTTC 1 cut(s) 460
HpyCH4III ACNGT 2 cut(s) 51, 438
HpyCH4IV ACGT 1 cut(s) 667
HpyCH4V TGCA 5 cut(s) 266, 316, 457, 506, 568
HpyF10VI GCNNNNNNNGC 2 cut(s) 106, 272
HpyF3I CTNAG 4 cut(s) 57, 105, 111, 415
HpySE526I ACGT 1 cut(s) 667
Hsp92II CATG 5 cut(s) 13, 157, 457, 464, 697
Kzo9I GATC 6 cut(s) 135, 163, 480, 490, 787, 834
LmnI GCTCC 3 cut(s) 30, 162, 817
LpnPI CCDG 8 cut(s) 162, 230, 254, 276, 479, 569, 800, 816
Lsp1109I GCAGC 2 cut(s) 284, 839
LweI GCATC 2 cut(s) 42, 555
MaeI CTAG 7 cut(s) 101, 527, 674, 743, 849, 890, 899
MaeII ACGT 1 cut(s) 667
MaeIII GTNAC 1 cut(s) 575
MalI GATC 6 cut(s) 137, 165, 482, 492, 789, 836
MboI GATC 6 cut(s) 135, 163, 480, 490, 787, 834
MboII GAAGA 5 cut(s) 104, 607, 784, 870, 905
MfeI CAATTG 1 cut(s) 207
MflI RGATCY 2 cut(s) 135, 834
MluCI AATT 3 cut(s) 207, 278, 921
MmeI TCCRAC 1 cut(s) 8
MnlI CCTC 8 cut(s) 120, 322, 358, 385, 407, 563, 671, 861
MroXI GAANNNNTTC 1 cut(s) 68
MseI TTAA 2 cut(s) 822, 842
MslI CAYNNNNRTG 1 cut(s) 692
MspA1I CMGCKG 1 cut(s) 244
MunI CAATTG 1 cut(s) 207
MwoI GCNNNNNNNGC 2 cut(s) 106, 272
NdeII GATC 6 cut(s) 135, 163, 480, 490, 787, 834
NheI GCTAGC 1 cut(s) 100
NlaIII CATG 5 cut(s) 13, 157, 457, 464, 697
NlaIV GGNNCC 4 cut(s) 147, 650, 748, 836
NmuCI GTSAC 1 cut(s) 575
NspI RCATGY 1 cut(s) 157
PaeR7I CTCGAG 1 cut(s) 554
PdmI GAANNNNTTC 1 cut(s) 68
PfeI GAWTC 1 cut(s) 903
PkrI GCNGC 3 cut(s) 274, 705, 829
PpuMI RGGWCCY 2 cut(s) 378, 746
Psp5II RGGWCCY 2 cut(s) 378, 746
PspN4I GGNNCC 4 cut(s) 147, 650, 748, 836
PspPI GGNCC 4 cut(s) 212, 378, 394, 746
PspPPI RGGWCCY 2 cut(s) 378, 746
PspXI VCTCGAGB 1 cut(s) 554
PsuI RGATCY 2 cut(s) 135, 834
PvuII CAGCTG 1 cut(s) 244
RsaI GTAC 1 cut(s) 682
RsaNI GTAC 1 cut(s) 681
RseI CAYNNNNRTG 1 cut(s) 692
SaqAI TTAA 2 cut(s) 822, 842
SatI GCNGC 3 cut(s) 273, 704, 828
Sau3AI GATC 6 cut(s) 135, 163, 480, 490, 787, 834
Sau96I GGNCC 4 cut(s) 212, 378, 394, 746
SfaNI GCATC 2 cut(s) 42, 555
SfcI CTRYAG 1 cut(s) 434
Sfr274I CTCGAG 1 cut(s) 554
SinI GGWCC 3 cut(s) 212, 378, 746
SlaI CTCGAG 1 cut(s) 554
SmiMI CAYNNNNRTG 1 cut(s) 692
SmlI CTYRAG 2 cut(s) 554, 865
SmoI CTYRAG 2 cut(s) 554, 865
Sse9I AATT 3 cut(s) 207, 278, 921
SsiI CCGC 5 cut(s) 587, 600, 704, 763, 805
SspMI CTAG 7 cut(s) 101, 527, 674, 743, 849, 890, 899
StyI CCWWGG 1 cut(s) 194
TaaI ACNGT 2 cut(s) 51, 438
TaiI ACGT 1 cut(s) 670
TaqI TCGA 2 cut(s) 555, 606
TasI AATT 3 cut(s) 207, 278, 921
TauI GCSGC 1 cut(s) 706
TfiI GAWTC 1 cut(s) 903
Tru1I TTAA 2 cut(s) 822, 842
Tru9I TTAA 2 cut(s) 822, 842
TscAI CASTG 1 cut(s) 273
TseFI GTSAC 1 cut(s) 575
TseI GCWGC 2 cut(s) 272, 827
Tsp45I GTSAC 1 cut(s) 575
TspDTI ATGAA 4 cut(s) 26, 30, 430, 442
TspRI CASTG 1 cut(s) 273
VpaK11BI GGWCC 3 cut(s) 212, 378, 746
XapI RAATTY 1 cut(s) 278
XceI RCATGY 1 cut(s) 157
XhoI CTCGAG 1 cut(s) 554
XmnI GAANNNNTTC 1 cut(s) 68
XspI CTAG 7 cut(s) 101, 527, 674, 743, 849, 890, 899
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.