Rh2DG339200

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001605
Physical Location & Seq
Reverse (-)
43877049 .. 43878511
1463 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG339200.1

Sequence Viewer

Length: 1383 bp
ATGGCTTCCATGAATGAAGCTCCAAGTGGGAGCATCACAATCCTTGAACAGTTCTCTAAGGAGGAGTTGTTCAAAAACATAAAGGAAGCAGAAGAAAGGCTAGCTCAGCCTCAGTCTCAAAGCTCAAAACCAAAGATTCAAAGGGTTCCCGACATGCTCCGAGATCACCCAAATTTCGAGAAATACTATGAGCCAAGGGCAGTAGCACTTGGTCCTTTCCATCATAATAAAGCAAGGTGTCAGCTGGCAGAGAAGTTCAAGTTCGCACTGGCAGCAAAATTTATCAAAGAAAGTGGCAGTCGAGCTGAAGATTTGCACAAGATCATTGAGGACAACATCAACGAACTAAAGGACTGCTACGATGAGGAAGCAACAAGATCCTACACCGACGAGGCCCTCACACAATTGTTATTCTTAGATGGGTGTTCAACCTTACAGTTCATATACTCGTTTACGAATAATAAGTTAGAAGATTTCAAGATCAAGAGGGATCAGGTGGCTTTTGCAGAACAGGATTTGTTCTTGCTAGAAAACCAACTCCCTTACCAAGTCCTCAAGCTGTTGATGAGCAAAAGTGACAAAGCGGAAGAGTTGAAGATCGCAATTGGTGAATTTGTTCTAAAGAACATCGACAAAATATCAAAAAGGCACAAAGACAAAAGAACACGTCGAGCAAGAGGTACAGTCATAAACGTGGAAGAGCCCACTCATCTTCTCGAGCTTCTCCGGACAGAAATGCTAGGTCCCCAAAAAGTTGACGCCGAGGATCAACATGGCCGACAATCGTTCCGCAACATACAGGAGCTTAAAGCAGCTGGGATCCATTTAAAGCCTAGTAAGAAAATCACCTTGAGGGACATATCTTTTACTTCTCTAGGCTTTGTAGGATTCCTATATCTTCCACCAATATCAGTAGACGACTCTATGGGGCCTAAGTTCTTGAACATGATAGCCTATGAGATGTGTCCAGATTTCCAAAATGACTTTGGGGTCACCTCTTACATATGCTTCCTGGATTCACTGATAGATCATGCAGATGACGTTAAACAGCTAAGGTCGGCAGGCGTACTACACAACTTACTTGGGAGTGATGGAGAGGTGGCTCAACTTTTCAATGAGATAGGTACTGACTTAGTGCCTAATAGTGAAACATACCTCAGTGTCAAATCCAAATTAGAAAAGCACTACAAAACCAAGTGGAAAACCTGGATGGCTCAATTCTGTCACCAACATTTTAGTAGTCCCTGGACTATCCTGGCTTTCATTGGTGTTCTAGCAGCTCTGGGGTTAAGCGGCATTCAGACTTGGTACACAATCAATTCTCCTCCCTCTGCCTGCGATGCTGTATGCGAGTACTTGAAGAAACAGCTAAAAATAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

460

Amino Acids

52.53

Weight (kDa)

6.26

Isoelectric Point (pI)

43.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 46 - 428 4.9e-92 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 989
AccI GTMKAC 1 cut(s) 915
AccIII TCCGGA 1 cut(s) 726
AciI CCGC 3 cut(s) 584, 790, 1293
AclWI GGATC 5 cut(s) 372, 498, 774, 814, 827
AcoI YGGCCR 1 cut(s) 775
AcsI RAATTY 3 cut(s) 172, 278, 611
AcuI CTGAAG 1 cut(s) 327
AcyI GRCGYC 1 cut(s) 759
AfaI GTAC 5 cut(s) 682, 1068, 1126, 1310, 1355
AflIII ACRYGT 1 cut(s) 665
AjiI CACGTC 1 cut(s) 668
AjnI CCWGG 4 cut(s) 1011, 1205, 1244, 1254
AloI GAACNNNNNNTCC 2 cut(s) 53, 85
Alw26I GTCTC 1 cut(s) 120
AlwI GGATC 5 cut(s) 372, 498, 774, 814, 827
Ama87I CYCGRG 1 cut(s) 716
Aor13HI TCCGGA 1 cut(s) 726
AoxI GGCC 3 cut(s) 393, 775, 929
ApeKI GCWGC 3 cut(s) 272, 812, 1277
ApoI RAATTY 3 cut(s) 172, 278, 611
Asp700I GAANNNNTTC 1 cut(s) 615
AspS9I GGNCC 4 cut(s) 212, 394, 743, 929
AsuHPI GGTGA 5 cut(s) 158, 620, 838, 985, 1217
AsuNHI GCTAGC 1 cut(s) 100
AvaI CYCGRG 1 cut(s) 716
AvaII GGWCC 2 cut(s) 212, 743
BamHI GGATCC 1 cut(s) 819
BanII GRGCYC 1 cut(s) 705
BbvI GCAGC 3 cut(s) 284, 824, 1289
BccI CCATC 4 cut(s) 228, 413, 1085, 1204
BciT130I CCWGG 4 cut(s) 1013, 1207, 1246, 1256
BcoDI GTCTC 1 cut(s) 120
BfaI CTAG 6 cut(s) 101, 527, 740, 834, 875, 1274
BisI GCNGC 4 cut(s) 273, 813, 1278, 1294
BlpI GCTNAGC 1 cut(s) 105
BlsI GCNGC 4 cut(s) 274, 814, 1279, 1295
BmcAI AGTACT 1 cut(s) 1355
Bme1390I CCNGG 4 cut(s) 1013, 1207, 1246, 1256
Bme18I GGWCC 2 cut(s) 212, 743
BmeT110I CYCGRG 1 cut(s) 716
BmgBI CACGTC 1 cut(s) 668
BmgT120I GGNCC 4 cut(s) 212, 394, 743, 929
BmiI GGNNCC 4 cut(s) 147, 745, 821, 930
BmrFI CCNGG 4 cut(s) 1013, 1207, 1246, 1256
BmsI GCATC 2 cut(s) 42, 1330
BmtI GCTAGC 1 cut(s) 104
Bpu10I CCTNAGC 1 cut(s) 1052
Bpu1102I GCTNAGC 1 cut(s) 105
BpuEI CTTGAG 2 cut(s) 539, 871
BsaHI GRCGYC 1 cut(s) 759
BsaJI CCNNGG 3 cut(s) 194, 762, 1244
BsaWI WCCGGW 1 cut(s) 726
BsaXI ACNNNNNCTCC 2 cut(s) 53, 83
Bse1I ACTGG 1 cut(s) 273
BseAI TCCGGA 1 cut(s) 726
BseBI CCWGG 4 cut(s) 1013, 1207, 1246, 1256
BseDI CCNNGG 3 cut(s) 194, 762, 1244
BseGI GGATG 1 cut(s) 1215
BseMII CTCAG 3 cut(s) 119, 125, 1171
BseNI ACTGG 1 cut(s) 273
BseRI GAGGAG 2 cut(s) 77, 1314
BseXI GCAGC 3 cut(s) 284, 824, 1289
BseYI CCCAGC 1 cut(s) 815
BshFI GGCC 3 cut(s) 395, 777, 931
BsiHKCI CYCGRG 1 cut(s) 716
BsiSI CCGG 1 cut(s) 727
BslFI GGGAC 3 cut(s) 729, 869, 1227
BsmAI GTCTC 1 cut(s) 120
BsmFI GGGAC 3 cut(s) 729, 869, 1227
BsmI GAATGC 1 cut(s) 1296
BsnI GGCC 3 cut(s) 395, 777, 931
BsoBI CYCGRG 1 cut(s) 716
Bsp1286I GDGCHC 1 cut(s) 705
Bsp13I TCCGGA 1 cut(s) 726
Bsp143I GATC 9 cut(s) 163, 321, 377, 480, 490, 597, 766, 819, 1027
Bsp1720I GCTNAGC 1 cut(s) 105
BspACI CCGC 3 cut(s) 584, 790, 1293
BspANI GGCC 3 cut(s) 395, 777, 931
BspCNI CTCAG 3 cut(s) 118, 124, 1170
BspEI TCCGGA 1 cut(s) 726
BspLI GGNNCC 4 cut(s) 147, 745, 821, 930
BspOI GCTAGC 1 cut(s) 104
BspPI GGATC 5 cut(s) 372, 498, 774, 814, 827
BspQI GCTCTTC 1 cut(s) 693
BsrI ACTGG 1 cut(s) 273
BssECI CCNNGG 3 cut(s) 194, 762, 1244
BssMI GATC 9 cut(s) 163, 321, 377, 480, 490, 597, 766, 819, 1027
BssNI GRCGYC 1 cut(s) 759
BssT1I CCWWGG 1 cut(s) 194
Bst2UI CCWGG 4 cut(s) 1013, 1207, 1246, 1256
Bst4CI ACNGT 3 cut(s) 51, 438, 685
Bst6I CTCTTC 2 cut(s) 582, 693
BstACI GRCGYC 1 cut(s) 759
BstC8I GCNNGC 4 cut(s) 102, 246, 1063, 1336
BstDEI CTNAG 8 cut(s) 57, 105, 111, 415, 933, 1052, 1132, 1157
BstEII GGTNACC 1 cut(s) 991
BstF5I GGATG 1 cut(s) 1215
BstKTI GATC 9 cut(s) 166, 324, 380, 483, 493, 600, 769, 822, 1030
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 9 cut(s) 163, 321, 377, 480, 490, 597, 766, 819, 1027
BstMWI GCNNNNNNNGC 3 cut(s) 106, 272, 1340
BstNI CCWGG 4 cut(s) 1013, 1207, 1246, 1256
BstNSI RCATGY 1 cut(s) 157
BstPI GGTNACC 1 cut(s) 991
BstSCI CCNGG 4 cut(s) 1011, 1205, 1244, 1254
BstV1I GCAGC 3 cut(s) 284, 824, 1289
BstX2I RGATCY 2 cut(s) 377, 819
BstYI RGATCY 2 cut(s) 377, 819
BsuRI GGCC 3 cut(s) 395, 777, 931
BtgZI GCGATG 1 cut(s) 1353
BtrI CACGTC 1 cut(s) 668
BtsCI GGATG 1 cut(s) 1215
BtsIMutI CAGTG 3 cut(s) 266, 1019, 1165
Cac8I GCNNGC 4 cut(s) 102, 246, 1063, 1336
Cfr13I GGNCC 4 cut(s) 212, 394, 743, 929
CseI GACGC 1 cut(s) 767
Csp6I GTAC 5 cut(s) 681, 1067, 1125, 1309, 1354
CspCI CAANNNNNGTGG 2 cut(s) 274, 309
CviAII CATG 5 cut(s) 10, 154, 773, 946, 1031
CviQI GTAC 5 cut(s) 681, 1067, 1125, 1309, 1354
DdeI CTNAG 8 cut(s) 57, 105, 111, 415, 933, 1052, 1132, 1157
DpnI GATC 9 cut(s) 165, 323, 379, 482, 492, 599, 768, 821, 1029
DpnII GATC 9 cut(s) 163, 321, 377, 480, 490, 597, 766, 819, 1027
DraI TTTAAA 1 cut(s) 828
DrdI GACNNNNNNGTC 1 cut(s) 989
DseDI GACNNNNNNGTC 1 cut(s) 989
EaeI YGGCCR 1 cut(s) 775
Eam1104I CTCTTC 2 cut(s) 582, 693
EarI CTCTTC 2 cut(s) 582, 693
Eco130I CCWWGG 1 cut(s) 194
Eco24I GRGCYC 1 cut(s) 705
Eco47I GGWCC 2 cut(s) 212, 743
Eco57I CTGAAG 1 cut(s) 327
Eco88I CYCGRG 1 cut(s) 716
Eco91I GGTNACC 1 cut(s) 991
EcoO109I RGGNCCY 3 cut(s) 394, 743, 929
EcoO65I GGTNACC 1 cut(s) 991
EcoRII CCWGG 4 cut(s) 1011, 1205, 1244, 1254
EcoT14I CCWWGG 1 cut(s) 194
EcoT38I GRGCYC 1 cut(s) 705
ErhI CCWWGG 1 cut(s) 194
FaeI CATG 5 cut(s) 13, 157, 776, 949, 1034
FaqI GGGAC 3 cut(s) 729, 869, 1227
FatI CATG 5 cut(s) 9, 153, 772, 945, 1030
FauNDI CATATG 1 cut(s) 1004
FblI GTMKAC 1 cut(s) 915
Fnu4HI GCNGC 4 cut(s) 273, 813, 1278, 1294
FokI GGATG 1 cut(s) 1222
FriOI GRGCYC 1 cut(s) 705
Fsp4HI GCNGC 4 cut(s) 273, 813, 1278, 1294
FspBI CTAG 6 cut(s) 101, 527, 740, 834, 875, 1274
GluI GCNGC 4 cut(s) 273, 813, 1278, 1294
GsaI CCCAGC 1 cut(s) 819
HaeIII GGCC 3 cut(s) 395, 777, 931
HapII CCGG 1 cut(s) 727
HgaI GACGC 1 cut(s) 767
Hin1I GRCGYC 1 cut(s) 759
Hin1II CATG 5 cut(s) 13, 157, 776, 949, 1034
HincII GTYRAC 1 cut(s) 757
HindII GTYRAC 1 cut(s) 757
HinfI GANTC 4 cut(s) 136, 888, 920, 1016
HpaII CCGG 1 cut(s) 727
HphI GGTGA 5 cut(s) 158, 620, 838, 985, 1217
Hpy166II GTNNAC 4 cut(s) 453, 757, 916, 1311
Hpy188I TCNGA 2 cut(s) 161, 1302
Hpy188III TCNNGA 8 cut(s) 149, 178, 478, 484, 716, 727, 940, 968
Hpy8I GTNNAC 4 cut(s) 453, 757, 916, 1311
Hpy99I CGWCG 2 cut(s) 392, 672
HpyCH4III ACNGT 3 cut(s) 51, 438, 685
HpyCH4IV ACGT 3 cut(s) 667, 693, 1041
HpyCH4V TGCA 3 cut(s) 316, 506, 1034
HpyF10VI GCNNNNNNNGC 3 cut(s) 106, 272, 1340
HpyF3I CTNAG 8 cut(s) 57, 105, 111, 415, 933, 1052, 1132, 1157
HpySE526I ACGT 3 cut(s) 667, 693, 1041
Hsp92I GRCGYC 1 cut(s) 759
Hsp92II CATG 5 cut(s) 13, 157, 776, 949, 1034
Kpn2I TCCGGA 1 cut(s) 726
Kzo9I GATC 9 cut(s) 163, 321, 377, 480, 490, 597, 766, 819, 1027
LguI GCTCTTC 1 cut(s) 693
LmnI GCTCC 4 cut(s) 25, 30, 162, 802
Lsp1109I GCAGC 3 cut(s) 284, 824, 1289
LweI GCATC 2 cut(s) 42, 1330
MaeI CTAG 6 cut(s) 101, 527, 740, 834, 875, 1274
MaeII ACGT 3 cut(s) 667, 693, 1041
MaeIII GTNAC 3 cut(s) 575, 991, 1223
MalI GATC 9 cut(s) 165, 323, 379, 482, 492, 599, 768, 821, 1029
MboI GATC 9 cut(s) 163, 321, 377, 480, 490, 597, 766, 819, 1027
MboII GAAGA 9 cut(s) 104, 320, 482, 599, 607, 704, 710, 890, 1372
MfeI CAATTG 2 cut(s) 404, 603
MflI RGATCY 2 cut(s) 377, 819
MhlI GDGCHC 1 cut(s) 705
MluCI AATT 8 cut(s) 172, 278, 404, 603, 611, 1172, 1217, 1318
MlyI GAGTC 1 cut(s) 914
MroI TCCGGA 1 cut(s) 726
MroXI GAANNNNTTC 1 cut(s) 615
MseI TTAA 4 cut(s) 807, 827, 1044, 1289
MslI CAYNNNNRTG 2 cut(s) 692, 1035
MspA1I CMGCKG 2 cut(s) 244, 815
MspI CCGG 1 cut(s) 727
MspR9I CCNGG 4 cut(s) 1013, 1207, 1246, 1256
MunI CAATTG 2 cut(s) 404, 603
Mva1269I GAATGC 1 cut(s) 1296
MvaI CCWGG 4 cut(s) 1013, 1207, 1246, 1256
MwoI GCNNNNNNNGC 3 cut(s) 106, 272, 1340
NdeI CATATG 1 cut(s) 1004
NdeII GATC 9 cut(s) 163, 321, 377, 480, 490, 597, 766, 819, 1027
NheI GCTAGC 1 cut(s) 100
NlaIII CATG 5 cut(s) 13, 157, 776, 949, 1034
NlaIV GGNNCC 4 cut(s) 147, 745, 821, 930
NmeAIII GCCGAG 1 cut(s) 787
NmuCI GTSAC 3 cut(s) 575, 991, 1223
NspI RCATGY 1 cut(s) 157
PaeR7I CTCGAG 1 cut(s) 716
PciSI GCTCTTC 1 cut(s) 693
PctI GAATGC 1 cut(s) 1296
PdmI GAANNNNTTC 1 cut(s) 615
PfeI GAWTC 3 cut(s) 136, 888, 1016
PfoI TCCNGGA 1 cut(s) 1011
PkrI GCNGC 4 cut(s) 274, 814, 1279, 1295
PleI GAGTC 1 cut(s) 914
PpsI GAGTC 1 cut(s) 914
PpuMI RGGWCCY 1 cut(s) 743
Psp5II RGGWCCY 1 cut(s) 743
Psp6I CCWGG 4 cut(s) 1011, 1205, 1244, 1254
PspEI GGTNACC 1 cut(s) 991
PspFI CCCAGC 1 cut(s) 815
PspGI CCWGG 4 cut(s) 1011, 1205, 1244, 1254
PspN4I GGNNCC 4 cut(s) 147, 745, 821, 930
PspPI GGNCC 4 cut(s) 212, 394, 743, 929
PspPPI RGGWCCY 1 cut(s) 743
PsuI RGATCY 2 cut(s) 377, 819
PvuII CAGCTG 2 cut(s) 244, 815
RsaI GTAC 5 cut(s) 682, 1068, 1126, 1310, 1355
RsaNI GTAC 5 cut(s) 681, 1067, 1125, 1309, 1354
RseI CAYNNNNRTG 2 cut(s) 692, 1035
SapI GCTCTTC 1 cut(s) 693
SaqAI TTAA 4 cut(s) 807, 827, 1044, 1289
SatI GCNGC 4 cut(s) 273, 813, 1278, 1294
Sau3AI GATC 9 cut(s) 163, 321, 377, 480, 490, 597, 766, 819, 1027
Sau96I GGNCC 4 cut(s) 212, 394, 743, 929
ScaI AGTACT 1 cut(s) 1355
SchI GAGTC 1 cut(s) 914
ScrFI CCNGG 4 cut(s) 1013, 1207, 1246, 1256
SduI GDGCHC 1 cut(s) 705
SfaNI GCATC 2 cut(s) 42, 1330
Sfr274I CTCGAG 1 cut(s) 716
SinI GGWCC 2 cut(s) 212, 743
SlaI CTCGAG 1 cut(s) 716
SmiMI CAYNNNNRTG 2 cut(s) 692, 1035
SmlI CTYRAG 3 cut(s) 554, 716, 850
SmoI CTYRAG 3 cut(s) 554, 716, 850
Sse9I AATT 8 cut(s) 172, 278, 404, 603, 611, 1172, 1217, 1318
SsiI CCGC 3 cut(s) 584, 790, 1293
SspMI CTAG 6 cut(s) 101, 527, 740, 834, 875, 1274
StyD4I CCNGG 4 cut(s) 1011, 1205, 1244, 1254
StyI CCWWGG 1 cut(s) 194
TaaI ACNGT 3 cut(s) 51, 438, 685
TaiI ACGT 3 cut(s) 670, 696, 1044
TaqI TCGA 5 cut(s) 177, 301, 630, 670, 717
TasI AATT 8 cut(s) 172, 278, 404, 603, 611, 1172, 1217, 1318
TatI WGTACW 1 cut(s) 1353
TauI GCSGC 1 cut(s) 1296
TfiI GAWTC 3 cut(s) 136, 888, 1016
Tru1I TTAA 4 cut(s) 807, 827, 1044, 1289
Tru9I TTAA 4 cut(s) 807, 827, 1044, 1289
TscAI CASTG 3 cut(s) 273, 1026, 1165
TseFI GTSAC 3 cut(s) 575, 991, 1223
TseI GCWGC 3 cut(s) 272, 812, 1277
Tsp45I GTSAC 3 cut(s) 575, 991, 1223
TspDTI ATGAA 4 cut(s) 26, 30, 430, 1252
TspRI CASTG 3 cut(s) 273, 1026, 1165
VpaK11BI GGWCC 2 cut(s) 212, 743
XapI RAATTY 3 cut(s) 172, 278, 611
XceI RCATGY 1 cut(s) 157
XcmI CCANNNNNNNNNTGG 1 cut(s) 983
XhoI CTCGAG 1 cut(s) 716
XmiI GTMKAC 1 cut(s) 915
XmnI GAANNNNTTC 1 cut(s) 615
XspI CTAG 6 cut(s) 101, 527, 740, 834, 875, 1274
ZrmI AGTACT 1 cut(s) 1355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.