Plant protein of unknown function
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF247 | PF03140 | 31 - 419 | 8.2e-99 | Plant protein of unknown function |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1183 |
| Acc65I | GGTACC | 1 cut(s) | 100 |
| AccB1I | GGYRCC | 1 cut(s) | 100 |
| AccBSI | CCGCTC | 2 cut(s) | 653, 674 |
| AciI | CCGC | 4 cut(s) | 115, 651, 672, 962 |
| AclWI | GGATC | 4 cut(s) | 23, 85, 787, 800 |
| AcsI | RAATTY | 1 cut(s) | 209 |
| AfaI | GTAC | 4 cut(s) | 102, 753, 771, 1041 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 357, 826 |
| AgsI | TTSAA | 4 cut(s) | 214, 263, 384, 550 |
| AjnI | CCWGG | 4 cut(s) | 592, 1178, 1217, 1227 |
| Alw21I | GWGCWC | 2 cut(s) | 527, 592 |
| Alw26I | GTCTC | 4 cut(s) | 341, 557, 1191, 1308 |
| Alw44I | GTGCAC | 1 cut(s) | 588 |
| AlwI | GGATC | 4 cut(s) | 23, 85, 787, 800 |
| Ama87I | CYCGRG | 1 cut(s) | 509 |
| AoxI | GGCC | 3 cut(s) | 153, 166, 902 |
| ApaLI | GTGCAC | 1 cut(s) | 588 |
| ApeKI | GCWGC | 2 cut(s) | 785, 1250 |
| ApoI | RAATTY | 1 cut(s) | 209 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 821, 853 |
| Asp718I | GGTACC | 1 cut(s) | 100 |
| AspS9I | GGNCC | 6 cut(s) | 153, 167, 445, 710, 902, 1108 |
| AsuC2I | CCSGG | 1 cut(s) | 790 |
| AsuHPI | GGTGA | 1 cut(s) | 958 |
| AsuII | TTCGAA | 1 cut(s) | 39 |
| AvaI | CYCGRG | 1 cut(s) | 509 |
| AvaII | GGWCC | 3 cut(s) | 445, 710, 1108 |
| BaeGI | GKGCMC | 1 cut(s) | 592 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 853, 886 |
| BamHI | GGATCC | 1 cut(s) | 792 |
| BanI | GGYRCC | 1 cut(s) | 100 |
| BanII | GRGCYC | 3 cut(s) | 527, 651, 672 |
| BbsI | GAAGAC | 2 cut(s) | 863, 1181 |
| Bbv12I | GWGCWC | 2 cut(s) | 527, 592 |
| BbvCI | CCTCAGC | 1 cut(s) | 204 |
| BbvI | GCAGC | 2 cut(s) | 797, 1262 |
| BccI | CCATC | 3 cut(s) | 183, 368, 1306 |
| BceAI | ACGGC | 1 cut(s) | 140 |
| BciT130I | CCWGG | 4 cut(s) | 594, 1180, 1219, 1229 |
| BciVI | GTATCC | 1 cut(s) | 854 |
| BclI | TGATCA | 1 cut(s) | 1000 |
| BcnI | CCSGG | 1 cut(s) | 790 |
| BcoDI | GTCTC | 4 cut(s) | 341, 557, 1191, 1308 |
| BfaI | CTAG | 4 cut(s) | 249, 482, 707, 1247 |
| BfuI | GTATCC | 1 cut(s) | 854 |
| BisI | GCNGC | 2 cut(s) | 786, 1251 |
| BlpI | GCTNAGC | 1 cut(s) | 1077 |
| BlsI | GCNGC | 2 cut(s) | 787, 1252 |
| Bme1390I | CCNGG | 5 cut(s) | 594, 790, 1180, 1219, 1229 |
| Bme18I | GGWCC | 3 cut(s) | 445, 710, 1108 |
| BmeT110I | CYCGRG | 1 cut(s) | 509 |
| BmgT120I | GGNCC | 6 cut(s) | 153, 167, 445, 710, 902, 1108 |
| BmiI | GGNNCC | 4 cut(s) | 102, 446, 794, 1110 |
| BmrFI | CCNGG | 5 cut(s) | 594, 790, 1180, 1219, 1229 |
| BmrI | ACTGGG | 1 cut(s) | 1064 |
| BmsI | GCATC | 4 cut(s) | 280, 772, 979, 1278 |
| BmuI | ACTGGG | 1 cut(s) | 1064 |
| BpiI | GAAGAC | 2 cut(s) | 863, 1181 |
| BpmI | CTGGAG | 1 cut(s) | 51 |
| Bpu10I | CCTNAGC | 2 cut(s) | 204, 1025 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1077 |
| Bpu14I | TTCGAA | 1 cut(s) | 39 |
| BpuEI | CTTGAG | 1 cut(s) | 511 |
| BpuMI | CCSGG | 1 cut(s) | 790 |
| BsaI | GGTCTC | 1 cut(s) | 341 |
| BsaJI | CCNNGG | 5 cut(s) | 149, 188, 318, 630, 1217 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1013, 1043 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 357, 826 |
| Bse118I | RCCGGY | 2 cut(s) | 1034, 1265 |
| Bse1I | ACTGG | 1 cut(s) | 1059 |
| Bse3DI | GCAATG | 1 cut(s) | 772 |
| BseBI | CCWGG | 4 cut(s) | 594, 1180, 1219, 1229 |
| BseDI | CCNNGG | 5 cut(s) | 149, 188, 318, 630, 1217 |
| BseGI | GGATG | 4 cut(s) | 366, 418, 1188, 1269 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 357, 826 |
| BseMI | GCAATG | 1 cut(s) | 772 |
| BseMII | CTCAG | 2 cut(s) | 38, 195 |
| BseNI | ACTGG | 1 cut(s) | 1059 |
| BseRI | GAGGAG | 2 cut(s) | 20, 44 |
| BseSI | GKGCMC | 1 cut(s) | 592 |
| BseXI | GCAGC | 2 cut(s) | 797, 1262 |
| Bsh1285I | CGRYCG | 1 cut(s) | 561 |
| BshFI | GGCC | 3 cut(s) | 155, 168, 904 |
| BshNI | GGYRCC | 1 cut(s) | 100 |
| BsiEI | CGRYCG | 1 cut(s) | 561 |
| BsiHKAI | GWGCWC | 2 cut(s) | 527, 592 |
| BsiHKCI | CYCGRG | 1 cut(s) | 509 |
| BsiSI | CCGG | 3 cut(s) | 789, 1035, 1266 |
| BslFI | GGGAC | 4 cut(s) | 458, 479, 842, 1094 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 357, 826 |
| BsmAI | GTCTC | 4 cut(s) | 341, 557, 1191, 1308 |
| BsmBI | CGTCTC | 1 cut(s) | 1308 |
| BsmFI | GGGAC | 4 cut(s) | 458, 479, 842, 1094 |
| BsmI | GAATGC | 1 cut(s) | 708 |
| BsnI | GGCC | 3 cut(s) | 155, 168, 904 |
| Bso31I | GGTCTC | 1 cut(s) | 341 |
| BsoBI | CYCGRG | 1 cut(s) | 509 |
| Bsp119I | TTCGAA | 1 cut(s) | 39 |
| Bsp1286I | GDGCHC | 4 cut(s) | 527, 592, 651, 672 |
| Bsp1407I | TGTACA | 1 cut(s) | 769 |
| Bsp143I | GATC | 8 cut(s) | 15, 90, 291, 435, 558, 792, 1000, 1201 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1077 |
| Bsp19I | CCATGG | 1 cut(s) | 630 |
| BspACI | CCGC | 4 cut(s) | 115, 651, 672, 962 |
| BspANI | GGCC | 3 cut(s) | 155, 168, 904 |
| BspCNI | CTCAG | 2 cut(s) | 39, 196 |
| BspHI | TCATGA | 1 cut(s) | 912 |
| BspLI | GGNNCC | 4 cut(s) | 102, 446, 794, 1110 |
| BspPI | GGATC | 4 cut(s) | 23, 85, 787, 800 |
| BspT104I | TTCGAA | 1 cut(s) | 39 |
| BspT107I | GGYRCC | 1 cut(s) | 100 |
| BspTNI | GGTCTC | 1 cut(s) | 341 |
| BsrBI | CCGCTC | 2 cut(s) | 653, 674 |
| BsrDI | GCAATG | 1 cut(s) | 772 |
| BsrFI | RCCGGY | 2 cut(s) | 1034, 1265 |
| BsrGI | TGTACA | 1 cut(s) | 769 |
| BsrI | ACTGG | 1 cut(s) | 1059 |
| BssAI | RCCGGY | 2 cut(s) | 1034, 1265 |
| BssECI | CCNNGG | 5 cut(s) | 149, 188, 318, 630, 1217 |
| BssMI | GATC | 8 cut(s) | 15, 90, 291, 435, 558, 792, 1000, 1201 |
| BssT1I | CCWWGG | 2 cut(s) | 188, 630 |
| Bst2UI | CCWGG | 4 cut(s) | 594, 1180, 1219, 1229 |
| Bst4CI | ACNGT | 2 cut(s) | 259, 815 |
| Bst6I | CTCTTC | 1 cut(s) | 411 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 537 |
| BstAUI | TGTACA | 1 cut(s) | 769 |
| BstBI | TTCGAA | 1 cut(s) | 39 |
| BstC8I | GCNNGC | 6 cut(s) | 119, 197, 201, 651, 672, 735 |
| BstDEI | CTNAG | 9 cut(s) | 24, 47, 204, 370, 806, 866, 906, 1025, 1077 |
| BstDSI | CCRYGG | 1 cut(s) | 630 |
| BstEII | GGTNACC | 1 cut(s) | 964 |
| BstF5I | GGATG | 4 cut(s) | 366, 418, 1188, 1269 |
| BstKTI | GATC | 8 cut(s) | 18, 93, 294, 438, 561, 795, 1003, 1204 |
| BstMAI | GTCTC | 4 cut(s) | 341, 557, 1191, 1308 |
| BstMBI | GATC | 8 cut(s) | 15, 90, 291, 435, 558, 792, 1000, 1201 |
| BstMCI | CGRYCG | 1 cut(s) | 561 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 62, 118, 323, 537 |
| BstNI | CCWGG | 4 cut(s) | 594, 1180, 1219, 1229 |
| BstPI | GGTNACC | 1 cut(s) | 964 |
| BstSCI | CCNGG | 5 cut(s) | 592, 788, 1178, 1217, 1227 |
| BstSLI | GKGCMC | 1 cut(s) | 592 |
| BstV1I | GCAGC | 2 cut(s) | 797, 1262 |
| BstV2I | GAAGAC | 2 cut(s) | 863, 1181 |
| BstX2I | RGATCY | 2 cut(s) | 90, 792 |
| BstYI | RGATCY | 2 cut(s) | 90, 792 |
| BsuI | GTATCC | 1 cut(s) | 854 |
| BsuRI | GGCC | 3 cut(s) | 155, 168, 904 |
| BtgI | CCRYGG | 1 cut(s) | 630 |
| BtsCI | GGATG | 4 cut(s) | 366, 418, 1188, 1269 |
| BtsIMutI | CAGTG | 2 cut(s) | 1098, 1116 |
| Cac8I | GCNNGC | 6 cut(s) | 119, 197, 201, 651, 672, 735 |
| CciI | TCATGA | 1 cut(s) | 912 |
| Cfr10I | RCCGGY | 2 cut(s) | 1034, 1265 |
| Cfr13I | GGNCC | 6 cut(s) | 153, 167, 445, 710, 902, 1108 |
| Csp6I | GTAC | 4 cut(s) | 101, 752, 770, 1040 |
| CviAII | CATG | 5 cut(s) | 109, 179, 631, 913, 1004 |
| CviQI | GTAC | 4 cut(s) | 101, 752, 770, 1040 |
| DdeI | CTNAG | 9 cut(s) | 24, 47, 204, 370, 806, 866, 906, 1025, 1077 |
| DpnI | GATC | 8 cut(s) | 17, 92, 293, 437, 560, 794, 1002, 1203 |
| DpnII | GATC | 8 cut(s) | 15, 90, 291, 435, 558, 792, 1000, 1201 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1183 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1183 |
| Eam1104I | CTCTTC | 1 cut(s) | 411 |
| EarI | CTCTTC | 1 cut(s) | 411 |
| Ecl136II | GAGCTC | 1 cut(s) | 525 |
| Eco130I | CCWWGG | 2 cut(s) | 188, 630 |
| Eco24I | GRGCYC | 3 cut(s) | 527, 651, 672 |
| Eco31I | GGTCTC | 1 cut(s) | 341 |
| Eco47I | GGWCC | 3 cut(s) | 445, 710, 1108 |
| Eco53kI | GAGCTC | 1 cut(s) | 525 |
| Eco88I | CYCGRG | 1 cut(s) | 509 |
| Eco91I | GGTNACC | 1 cut(s) | 964 |
| EcoICRI | GAGCTC | 1 cut(s) | 525 |
| EcoO109I | RGGNCCY | 2 cut(s) | 167, 902 |
| EcoO65I | GGTNACC | 1 cut(s) | 964 |
| EcoRI | GAATTC | 1 cut(s) | 209 |
| EcoRII | CCWGG | 4 cut(s) | 592, 1178, 1217, 1227 |
| EcoT14I | CCWWGG | 2 cut(s) | 188, 630 |
| EcoT38I | GRGCYC | 3 cut(s) | 527, 651, 672 |
| ErhI | CCWWGG | 2 cut(s) | 188, 630 |
| Esp3I | CGTCTC | 1 cut(s) | 1308 |
| FaeI | CATG | 5 cut(s) | 112, 182, 634, 916, 1007 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 89, 121 |
| FaqI | GGGAC | 4 cut(s) | 458, 479, 842, 1094 |
| FatI | CATG | 5 cut(s) | 108, 178, 630, 912, 1003 |
| FauI | CCCGC | 2 cut(s) | 658, 679 |
| FauNDI | CATATG | 1 cut(s) | 928 |
| FbaI | TGATCA | 1 cut(s) | 1000 |
| Fnu4HI | GCNGC | 2 cut(s) | 786, 1251 |
| FokI | GGATG | 4 cut(s) | 373, 425, 1195, 1256 |
| FriOI | GRGCYC | 3 cut(s) | 527, 651, 672 |
| Fsp4HI | GCNGC | 2 cut(s) | 786, 1251 |
| FspBI | CTAG | 4 cut(s) | 249, 482, 707, 1247 |
| GluI | GCNGC | 2 cut(s) | 786, 1251 |
| GsuI | CTGGAG | 1 cut(s) | 51 |
| HaeIII | GGCC | 3 cut(s) | 155, 168, 904 |
| HapII | CCGG | 3 cut(s) | 789, 1035, 1266 |
| Hin1II | CATG | 5 cut(s) | 112, 182, 634, 916, 1007 |
| HincII | GTYRAC | 2 cut(s) | 225, 1263 |
| HindII | GTYRAC | 2 cut(s) | 225, 1263 |
| HindIII | AAGCTT | 2 cut(s) | 215, 803 |
| HinfI | GANTC | 3 cut(s) | 36, 893, 916 |
| HpaI | GTTAAC | 1 cut(s) | 1263 |
| HpaII | CCGG | 3 cut(s) | 789, 1035, 1266 |
| HphI | GGTGA | 1 cut(s) | 958 |
| Hpy166II | GTNNAC | 5 cut(s) | 225, 590, 713, 1040, 1263 |
| Hpy188I | TCNGA | 7 cut(s) | 15, 133, 276, 610, 695, 921, 1211 |
| Hpy8I | GTNNAC | 5 cut(s) | 225, 590, 713, 1040, 1263 |
| HpyAV | CCTTC | 4 cut(s) | 115, 271, 547, 698 |
| HpyCH4III | ACNGT | 2 cut(s) | 259, 815 |
| HpyCH4IV | ACGT | 1 cut(s) | 570 |
| HpyCH4V | TGCA | 9 cut(s) | 271, 461, 590, 785, 857, 878, 992, 1007, 1286 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 62, 118, 323, 537 |
| HpyF3I | CTNAG | 9 cut(s) | 24, 47, 204, 370, 806, 866, 906, 1025, 1077 |
| HpySE526I | ACGT | 1 cut(s) | 570 |
| Hsp92II | CATG | 5 cut(s) | 112, 182, 634, 916, 1007 |
| KpnI | GGTACC | 1 cut(s) | 104 |
| Ksp22I | TGATCA | 1 cut(s) | 1000 |
| KspAI | GTTAAC | 1 cut(s) | 1263 |
| Kzo9I | GATC | 8 cut(s) | 15, 90, 291, 435, 558, 792, 1000, 1201 |
| LmnI | GCTCC | 3 cut(s) | 70, 117, 1021 |
| Lsp1109I | GCAGC | 2 cut(s) | 797, 1262 |
| LweI | GCATC | 4 cut(s) | 280, 772, 979, 1278 |
| MaeI | CTAG | 4 cut(s) | 249, 482, 707, 1247 |
| MaeII | ACGT | 1 cut(s) | 570 |
| MaeIII | GTNAC | 4 cut(s) | 311, 809, 964, 1196 |
| MalI | GATC | 8 cut(s) | 17, 92, 293, 437, 560, 794, 1002, 1203 |
| MbiI | CCGCTC | 2 cut(s) | 653, 674 |
| MboI | GATC | 8 cut(s) | 15, 90, 291, 435, 558, 792, 1000, 1201 |
| MboII | GAAGA | 8 cut(s) | 298, 301, 428, 437, 562, 671, 863, 1186 |
| MflI | RGATCY | 2 cut(s) | 90, 792 |
| MhlI | GDGCHC | 4 cut(s) | 527, 592, 651, 672 |
| MluCI | AATT | 4 cut(s) | 209, 392, 428, 1190 |
| MlyI | GAGTC | 1 cut(s) | 887 |
| MmeI | TCCRAC | 1 cut(s) | 402 |
| MseI | TTAA | 5 cut(s) | 240, 801, 1017, 1086, 1262 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1008 |
| MspI | CCGG | 3 cut(s) | 789, 1035, 1266 |
| MspR9I | CCNGG | 5 cut(s) | 594, 790, 1180, 1219, 1229 |
| Mva1269I | GAATGC | 1 cut(s) | 708 |
| MvaI | CCWGG | 4 cut(s) | 594, 1180, 1219, 1229 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 62, 118, 323, 537 |
| NciI | CCSGG | 1 cut(s) | 790 |
| NcoI | CCATGG | 1 cut(s) | 630 |
| NdeI | CATATG | 1 cut(s) | 928 |
| NdeII | GATC | 8 cut(s) | 15, 90, 291, 435, 558, 792, 1000, 1201 |
| NlaIII | CATG | 5 cut(s) | 112, 182, 634, 916, 1007 |
| NlaIV | GGNNCC | 4 cut(s) | 102, 446, 794, 1110 |
| NmeAIII | GCCGAG | 2 cut(s) | 174, 343 |
| NmuCI | GTSAC | 2 cut(s) | 964, 1196 |
| NspV | TTCGAA | 1 cut(s) | 39 |
| PaeR7I | CTCGAG | 1 cut(s) | 509 |
| PagI | TCATGA | 1 cut(s) | 912 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 567 |
| PctI | GAATGC | 1 cut(s) | 708 |
| PfeI | GAWTC | 2 cut(s) | 36, 916 |
| PflFI | GACNNNGTC | 1 cut(s) | 1106 |
| PkrI | GCNGC | 2 cut(s) | 787, 1252 |
| Ple19I | CGATCG | 1 cut(s) | 561 |
| PleI | GAGTC | 1 cut(s) | 887 |
| PpsI | GAGTC | 1 cut(s) | 887 |
| Psp124BI | GAGCTC | 1 cut(s) | 527 |
| Psp6I | CCWGG | 4 cut(s) | 592, 1178, 1217, 1227 |
| PspEI | GGTNACC | 1 cut(s) | 964 |
| PspGI | CCWGG | 4 cut(s) | 592, 1178, 1217, 1227 |
| PspN4I | GGNNCC | 4 cut(s) | 102, 446, 794, 1110 |
| PspPI | GGNCC | 6 cut(s) | 153, 167, 445, 710, 902, 1108 |
| PspXI | VCTCGAGB | 1 cut(s) | 509 |
| PsuI | RGATCY | 2 cut(s) | 90, 792 |
| PsyI | GACNNNGTC | 1 cut(s) | 1106 |
| PvuI | CGATCG | 1 cut(s) | 561 |
| RsaI | GTAC | 4 cut(s) | 102, 753, 771, 1041 |
| RsaNI | GTAC | 4 cut(s) | 101, 752, 770, 1040 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1008 |
| SacI | GAGCTC | 1 cut(s) | 527 |
| SaqAI | TTAA | 5 cut(s) | 240, 801, 1017, 1086, 1262 |
| SatI | GCNGC | 2 cut(s) | 786, 1251 |
| Sau3AI | GATC | 8 cut(s) | 15, 90, 291, 435, 558, 792, 1000, 1201 |
| Sau96I | GGNCC | 6 cut(s) | 153, 167, 445, 710, 902, 1108 |
| SchI | GAGTC | 1 cut(s) | 887 |
| ScrFI | CCNGG | 5 cut(s) | 594, 790, 1180, 1219, 1229 |
| SduI | GDGCHC | 4 cut(s) | 527, 592, 651, 672 |
| SfaNI | GCATC | 4 cut(s) | 280, 772, 979, 1278 |
| Sfr274I | CTCGAG | 1 cut(s) | 509 |
| SfuI | TTCGAA | 1 cut(s) | 39 |
| SinI | GGWCC | 3 cut(s) | 445, 710, 1108 |
| SlaI | CTCGAG | 1 cut(s) | 509 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1008 |
| SmlI | CTYRAG | 2 cut(s) | 509, 526 |
| SmoI | CTYRAG | 2 cut(s) | 509, 526 |
| Sse9I | AATT | 4 cut(s) | 209, 392, 428, 1190 |
| SsiI | CCGC | 4 cut(s) | 115, 651, 672, 962 |
| SspMI | CTAG | 4 cut(s) | 249, 482, 707, 1247 |
| SstI | GAGCTC | 1 cut(s) | 527 |
| StyD4I | CCNGG | 5 cut(s) | 592, 788, 1178, 1217, 1227 |
| StyI | CCWWGG | 2 cut(s) | 188, 630 |
| TaaI | ACNGT | 2 cut(s) | 259, 815 |
| TaiI | ACGT | 1 cut(s) | 573 |
| TaqI | TCGA | 4 cut(s) | 39, 434, 510, 561 |
| TasI | AATT | 4 cut(s) | 209, 392, 428, 1190 |
| TatI | WGTACW | 2 cut(s) | 769, 1039 |
| TfiI | GAWTC | 2 cut(s) | 36, 916 |
| Tru1I | TTAA | 5 cut(s) | 240, 801, 1017, 1086, 1262 |
| Tru9I | TTAA | 5 cut(s) | 240, 801, 1017, 1086, 1262 |
| TscAI | CASTG | 2 cut(s) | 1105, 1123 |
| TseFI | GTSAC | 2 cut(s) | 964, 1196 |
| TseI | GCWGC | 2 cut(s) | 785, 1250 |
| Tsp45I | GTSAC | 2 cut(s) | 964, 1196 |
| TspDTI | ATGAA | 6 cut(s) | 97, 385, 429, 901, 929, 945 |
| TspGWI | ACGGA | 1 cut(s) | 739 |
| TspRI | CASTG | 2 cut(s) | 1105, 1123 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1106 |
| VneI | GTGCAC | 1 cut(s) | 588 |
| VpaK11BI | GGWCC | 3 cut(s) | 445, 710, 1108 |
| XapI | RAATTY | 1 cut(s) | 209 |
| XhoI | CTCGAG | 1 cut(s) | 509 |
| XspI | CTAG | 4 cut(s) | 249, 482, 707, 1247 |