Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001605

Physical Location & Seq

Genomic Coordinates Forward (+)

50646912 .. 50647496

Gene Structure 585 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00118760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGCTTCCATGAATGAAGCTCCAAGTCGGAGCATCACAATCCTTGAACAGTTCTCTAAGGAGGAGTTGTTCAAAAACATAAAGGAAGCAGAAGAAAGGCTAACTCAGCCTCAGCCTCAGTCTCAAAGCGCAAAACCAAAGATCCAAAGGGTTCCAGACATGCTCCGAGATCACCCAAACTCCGAGAAATACTATGTGCCAAGGGCAGTAGCACTTGGTCCTTTCCATCATAATAAAGCAAGGTGTCAGCTGGCAGAGAAGTTCAAGCTCGCGCTGGCAGCAAAATTTATCCAACAAAGTGGCAGCCGAGCTGAAGATTTGCACAAGATCATTGAGGACAACATCAACACACTAAAGGACTGCTACGATGAGGAAGCAACAAGCTCCTACACCGACGAGGCCCTCACACACTTGTTATTCTTAGATGGGTGTTCAACCTTACAGTTCATATACTCGTTTATGCATAATGAGTTACAAGAATTCAAGATCAAGAGGGATCAGGTTGCCTTTGCAGAACAGGATTTGTTCTTGCTAGAAAACCAACTCCCCTTACCAAGTCCTCAAGCTGTTGATGAGCAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

194

Amino Acids

22.34

Weight (kDa)

5.42

Isoelectric Point (pI)

65.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF247	PF03140	48 - 184	1.8e-29	Plant protein of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001605)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02910 FvH4_6g25140
malus_domestica	MD00G1049100.v1.1 MD02G1233700.v1.1 MD07G1070100.v1.1 MD12G1022100.v1.1
prunus_persica	Prupe.7G045600_v2.0.a1 Prupe.7G045700_v2.0.a1 Prupe.7G045800_v2.0.a1 Prupe.7G046000_v2.0.a1 Prupe.8G075900_v2.0.a1 Prupe.8G076000_v2.0.a1
pyrus_communis	pycom12g02050 pycom12g07700 pycom12g07720 pycom14g07350 pycom14g07360
rosa_chinensis	RchiOBHm_Chr2g0125011
rosa_laevigata	RLG00000009906 RLG00000018842
rosa_multiflora	Rmu_sc0000796.1_g000003 Rmu_sc0000796.1_g000022 Rmu_sc0000796.1_g000026 Rmu_sc0001251.1_g000010 Rmu_sc0001251.1_g000012 Rmu_sc0010311.1_g000001 Rmu_sc0010311.1_g000003 Rmu_sc0010311.1_g000008 Rmu_sc0010311.1_g000010
rosa_roxburghii	Rroxscaffold_2G00118310 Rroxscaffold_2G00118330 Rroxscaffold_2G00118420 Rroxscaffold_2G00118460 Rroxscaffold_2G00118760
rosa_rugosa	Rorug02G0254900
rosa_samantha	Rh2AG313200 Rh2AG313500 Rh2BG321400 Rh2BG321800 Rh2CG303200 Rh2CG303500 Rh2CG303900 Rh2CG304000 Rh2DG339200 Rh2DG339500 Rh2DG340000 Rh2DG340100
rosa_wichuraiana	Rw2G025320 Rw2G025330 Rw2G025360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	272
AclWI	GGATC	2 cut(s)	136, 504
AcsI	RAATTY	2 cut(s)	284, 479
AcuI	CTGAAG	1 cut(s)	333
AgsI	TTSAA	5 cut(s)	47, 73, 265, 435, 484
AloI	GAACNNNNNNTCC	2 cut(s)	53, 85
AluBI	AGCT	6 cut(s)	20, 250, 268, 311, 384, 566
AluI	AGCT	6 cut(s)	20, 250, 268, 311, 384, 566
Alw26I	GTCTC	1 cut(s)	126
AlwI	GGATC	2 cut(s)	136, 504
AoxI	GGCC	1 cut(s)	399
ApeKI	GCWGC	2 cut(s)	278, 303
ApoI	RAATTY	2 cut(s)	284, 479
AspLEI	GCGC	2 cut(s)	131, 274
AspS9I	GGNCC	2 cut(s)	218, 400
AsuHPI	GGTGA	1 cut(s)	164
AvaII	GGWCC	1 cut(s)	218
BbvCI	CCTCAGC	1 cut(s)	111
BbvI	GCAGC	2 cut(s)	290, 315
BccI	CCATC	2 cut(s)	234, 419
BcoDI	GTCTC	1 cut(s)	126
BfaI	CTAG	1 cut(s)	533
BisI	GCNGC	2 cut(s)	279, 304
BlsI	GCNGC	2 cut(s)	280, 305
Bme18I	GGWCC	1 cut(s)	218
BmgT120I	GGNCC	2 cut(s)	218, 400
BmiI	GGNNCC	1 cut(s)	153
BmsI	GCATC	1 cut(s)	42
Bpu10I	CCTNAGC	1 cut(s)	111
BpuEI	CTTGAG	1 cut(s)	546
BsaJI	CCNNGG	1 cut(s)	200
BsaXI	ACNNNNNCTCC	4 cut(s)	53, 83, 164, 194
BseDI	CCNNGG	1 cut(s)	200
BseMII	CTCAG	3 cut(s)	119, 125, 131
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	2 cut(s)	290, 315
Bsh1236I	CGCG	1 cut(s)	272
BshFI	GGCC	1 cut(s)	401
BsmAI	GTCTC	1 cut(s)	126
BsnI	GGCC	1 cut(s)	401
Bsp143I	GATC	5 cut(s)	141, 169, 327, 486, 496
BspANI	GGCC	1 cut(s)	401
BspCNI	CTCAG	3 cut(s)	118, 124, 130
BspFNI	CGCG	1 cut(s)	272
BspLI	GGNNCC	1 cut(s)	153
BspPI	GGATC	2 cut(s)	136, 504
BssECI	CCNNGG	1 cut(s)	200
BssMI	GATC	5 cut(s)	141, 169, 327, 486, 496
BssT1I	CCWWGG	1 cut(s)	200
Bst4CI	ACNGT	2 cut(s)	51, 444
BstC8I	GCNNGC	3 cut(s)	252, 270, 276
BstDEI	CTNAG	5 cut(s)	57, 105, 111, 117, 421
BstFNI	CGCG	1 cut(s)	272
BstHHI	GCGC	2 cut(s)	131, 274
BstKTI	GATC	5 cut(s)	144, 172, 330, 489, 499
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	5 cut(s)	141, 169, 327, 486, 496
BstMWI	GCNNNNNNNGC	2 cut(s)	106, 278
BstNSI	RCATGY	1 cut(s)	163
BstUI	CGCG	1 cut(s)	272
BstV1I	GCAGC	2 cut(s)	290, 315
BstX2I	RGATCY	1 cut(s)	141
BstXI	CCANNNNNNTGG	1 cut(s)	299
BstYI	RGATCY	1 cut(s)	141
BsuRI	GGCC	1 cut(s)	401
Cac8I	GCNNGC	3 cut(s)	252, 270, 276
CfoI	GCGC	2 cut(s)	131, 274
Cfr13I	GGNCC	2 cut(s)	218, 400
CviAII	CATG	2 cut(s)	10, 160
DdeI	CTNAG	5 cut(s)	57, 105, 111, 117, 421
DpnI	GATC	5 cut(s)	143, 171, 329, 488, 498
DpnII	GATC	5 cut(s)	141, 169, 327, 486, 496
Eco130I	CCWWGG	1 cut(s)	200
Eco47I	GGWCC	1 cut(s)	218
Eco57I	CTGAAG	1 cut(s)	333
EcoO109I	RGGNCCY	1 cut(s)	400
EcoRI	GAATTC	1 cut(s)	479
EcoT14I	CCWWGG	1 cut(s)	200
EcoT22I	ATGCAT	1 cut(s)	465
ErhI	CCWWGG	1 cut(s)	200
FaeI	CATG	2 cut(s)	13, 163
FaiI	YATR	9 cut(s)	11, 80, 161, 195, 231, 449, 451, 461, 465
FatI	CATG	2 cut(s)	9, 159
Fnu4HI	GCNGC	2 cut(s)	279, 304
Fsp4HI	GCNGC	2 cut(s)	279, 304
FspBI	CTAG	1 cut(s)	533
GlaI	GCGC	2 cut(s)	130, 273
GluI	GCNGC	2 cut(s)	279, 304
HaeIII	GGCC	1 cut(s)	401
HhaI	GCGC	2 cut(s)	131, 274
Hin1II	CATG	2 cut(s)	13, 163
Hin6I	GCGC	2 cut(s)	129, 272
HinP1I	GCGC	2 cut(s)	129, 272
HphI	GGTGA	1 cut(s)	164
Hpy188I	TCNGA	3 cut(s)	30, 167, 184
Hpy188III	TCNNGA	3 cut(s)	155, 484, 490
Hpy99I	CGWCG	1 cut(s)	398
HpyCH4III	ACNGT	2 cut(s)	51, 444
HpyCH4V	TGCA	3 cut(s)	322, 463, 512
HpyF10VI	GCNNNNNNNGC	2 cut(s)	106, 278
HpyF3I	CTNAG	5 cut(s)	57, 105, 111, 117, 421
Hsp92II	CATG	2 cut(s)	13, 163
HspAI	GCGC	2 cut(s)	129, 272
Kzo9I	GATC	5 cut(s)	141, 169, 327, 486, 496
LmnI	GCTCC	4 cut(s)	25, 30, 168, 389
LpnPI	CCDG	5 cut(s)	168, 236, 260, 485, 503
Lsp1109I	GCAGC	2 cut(s)	290, 315
LweI	GCATC	1 cut(s)	42
MaeI	CTAG	1 cut(s)	533
MaeIII	GTNAC	1 cut(s)	471
MalI	GATC	5 cut(s)	143, 171, 329, 488, 498
MboI	GATC	5 cut(s)	141, 169, 327, 486, 496
MboII	GAAGA	2 cut(s)	104, 326
MflI	RGATCY	1 cut(s)	141
MluCI	AATT	2 cut(s)	284, 479
MmeI	TCCRAC	2 cut(s)	8, 316
MnlI	CCTC	9 cut(s)	55, 120, 126, 328, 364, 391, 413, 486, 570
Mph1103I	ATGCAT	1 cut(s)	465
MspA1I	CMGCKG	1 cut(s)	250
MvnI	CGCG	1 cut(s)	272
MwoI	GCNNNNNNNGC	2 cut(s)	106, 278
NdeII	GATC	5 cut(s)	141, 169, 327, 486, 496
NlaIII	CATG	2 cut(s)	13, 163
NlaIV	GGNNCC	1 cut(s)	153
NmeAIII	GCCGAG	1 cut(s)	332
NsiI	ATGCAT	1 cut(s)	465
NspI	RCATGY	1 cut(s)	163
PkrI	GCNGC	2 cut(s)	280, 305
PspN4I	GGNNCC	1 cut(s)	153
PspPI	GGNCC	2 cut(s)	218, 400
PsuI	RGATCY	1 cut(s)	141
PvuII	CAGCTG	1 cut(s)	250
SatI	GCNGC	2 cut(s)	279, 304
Sau3AI	GATC	5 cut(s)	141, 169, 327, 486, 496
Sau96I	GGNCC	2 cut(s)	218, 400
SetI	ASST	9 cut(s)	22, 245, 252, 270, 313, 386, 440, 504, 568
SfaNI	GCATC	1 cut(s)	42
SinI	GGWCC	1 cut(s)	218
SmlI	CTYRAG	1 cut(s)	561
SmoI	CTYRAG	1 cut(s)	561
Sse9I	AATT	2 cut(s)	284, 479
SspMI	CTAG	1 cut(s)	533
StyI	CCWWGG	1 cut(s)	200
TaaI	ACNGT	2 cut(s)	51, 444
TasI	AATT	2 cut(s)	284, 479
TseI	GCWGC	2 cut(s)	278, 303
TspDTI	ATGAA	3 cut(s)	26, 30, 436
VpaK11BI	GGWCC	1 cut(s)	218
XapI	RAATTY	2 cut(s)	284, 479
XceI	RCATGY	1 cut(s)	163
XspI	CTAG	1 cut(s)	533
Zsp2I	ATGCAT	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.