Rmu_sc0000796.1_g000022

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000796.1
OG0001605
Physical Location & Seq
Forward (+)
102923 .. 104362
1440 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000796.1_g000022.1.cds

Sequence Viewer

Length: 1440 bp
atggcacgaaacgaagacatggcttccatgaatgaagctccaattctgagcatcacaatccttgaacagttctctaaggaggagttgttcaaaaacataaaggaagcagaagaaaggctagctcagcctcagtctcaaagctcaaaaccaaagatccaaagggttcccgacatgctccgagatcacccaaacttcgagaaatactatgagccaagggcagtagcacttggtcctttccatcataataaagcaaggtgtcagctggcagagaagttcaagctcgagctggcagcaaaatttatccaacaaagtggcagtcgagctgaagatttgcacaagatcattgaggacgacatcaacacactaaaggactgctacgatgaggaagcaacaaggtcctacaccgacgaggccctcacacacttgttattcttagatgggtgttcaaccttgcagttcatatactcgttaatgcataatgagttggcagaattcaagatcaagagggatcaggttgcttttgcagaacaggatttgttcttgctagaaaaccaactcccttaccaagtcctgaagttattgatgaatgaaagtaagaaagcggaagacttgaagatcgcaatcgatgattttgttctaaagaagatcgcaatcgatgattttgttctaaagaagatcgacaaaatatcaaaaaggcacaaagacaaaagaacacgtcaacgacgagatacatccatagacatggaagagcctgctcatcttctcgagcttctccggacagaaatgctaggtccccaaaaacctgacgccaagaagaaagaacctaaacatcgccgacaatcgttccgcaacatacaggagcttaaagcagcagggatccatttaaagcctagtaagaaaagcaccttgagggacatatcttttacttctctaggctttgtaggattcctaagtcttccaccaatatcggtagacgactccatggggcctaagttcttgaatttgatagcctatgagatgtgtcctgatttccaaaatgactttggggtcacctcttacatatgcttcctagattcactgattgatcatgcagatgatgttaaacagctaaggtcggcaggcgtactacacaacttacttgggagtgatggagaggtggctcaacttttcaatgagataggtactgacttggtgcctaactatgaaacatacctcgatgtcaaatccaaattagaagagcactataaaaccaagtggaaaacctggatggctcaattctgtcacgaacatttcagtagcccctggaccatcctggctttccttggtgttctagcagctctggggttaagcggcattcagacttggtacacaatcagttctccgccctctgcctgcgatgctgtatgcgagtacttgaagaaacagctaaaaatagagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

479

Amino Acids

55.08

Weight (kDa)

6.06

Isoelectric Point (pI)

46.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1046
AccB1I GGYRCC 1 cut(s) 1192
AccI GTMKAC 1 cut(s) 972
AccIII TCCGGA 1 cut(s) 774
AciI CCGC 4 cut(s) 602, 847, 1350, 1382
AclWI GGATC 4 cut(s) 148, 516, 871, 884
AcsI RAATTY 3 cut(s) 296, 491, 1000
AcuI CTGAAG 2 cut(s) 345, 593
AcyI GRCGYC 1 cut(s) 807
AfaI GTAC 4 cut(s) 1125, 1183, 1367, 1412
AflIII ACRYGT 1 cut(s) 713
AgsI TTSAA 9 cut(s) 65, 91, 277, 447, 496, 613, 1000, 1171, 1417
AjiI CACGTC 1 cut(s) 716
AjnI CCWGG 3 cut(s) 1262, 1301, 1311
AloI GAACNNNNNNTCC 2 cut(s) 71, 103
Alw21I GWGCWC 1 cut(s) 1242
Alw26I GTCTC 1 cut(s) 138
AlwI GGATC 4 cut(s) 148, 516, 871, 884
Ama87I CYCGRG 2 cut(s) 281, 764
Aor13HI TCCGGA 1 cut(s) 774
AoxI GGCC 2 cut(s) 411, 986
ApeKI GCWGC 3 cut(s) 290, 869, 1334
ApoI RAATTY 3 cut(s) 296, 491, 1000
ArsI GACNNNNNNTTYG 2 cut(s) 301, 333
AspS9I GGNCC 6 cut(s) 230, 396, 412, 791, 986, 1305
AsuHPI GGTGA 2 cut(s) 176, 1042
AsuNHI GCTAGC 1 cut(s) 118
AvaI CYCGRG 2 cut(s) 281, 764
AvaII GGWCC 4 cut(s) 230, 396, 791, 1305
BamHI GGATCC 1 cut(s) 876
BanI GGYRCC 1 cut(s) 1192
BbsI GAAGAC 3 cut(s) 21, 612, 947
Bbv12I GWGCWC 1 cut(s) 1242
BbvI GCAGC 3 cut(s) 302, 881, 1346
BccI CCATC 5 cut(s) 246, 431, 1142, 1261, 1316
BciT130I CCWGG 3 cut(s) 1264, 1303, 1313
BclI TGATCA 1 cut(s) 1084
BcoDI GTCTC 1 cut(s) 138
BfaI CTAG 7 cut(s) 119, 545, 788, 891, 932, 1070, 1331
BisI GCNGC 4 cut(s) 291, 870, 1335, 1351
BlpI GCTNAGC 1 cut(s) 123
BlsI GCNGC 4 cut(s) 292, 871, 1336, 1352
BmcAI AGTACT 1 cut(s) 1412
Bme1390I CCNGG 3 cut(s) 1264, 1303, 1313
Bme18I GGWCC 4 cut(s) 230, 396, 791, 1305
BmeT110I CYCGRG 2 cut(s) 281, 764
BmgBI CACGTC 1 cut(s) 716
BmgT120I GGNCC 6 cut(s) 230, 396, 412, 791, 986, 1305
BmiI GGNNCC 5 cut(s) 165, 793, 878, 987, 1194
BmrFI CCNGG 3 cut(s) 1264, 1303, 1313
BmsI GCATC 2 cut(s) 60, 1387
BmtI GCTAGC 1 cut(s) 122
BpiI GAAGAC 3 cut(s) 21, 612, 947
Bpu10I CCTNAGC 1 cut(s) 1109
Bpu1102I GCTNAGC 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 928
Bsa29I ATCGAT 2 cut(s) 624, 654
BsaBI GATNNNNATC 2 cut(s) 620, 650
BsaHI GRCGYC 1 cut(s) 807
BsaJI CCNNGG 4 cut(s) 212, 981, 1301, 1321
BsaWI WCCGGW 1 cut(s) 774
BsaXI ACNNNNNCTCC 2 cut(s) 71, 101
Bse8I GATNNNNATC 2 cut(s) 620, 650
BseAI TCCGGA 1 cut(s) 774
BseBI CCWGG 3 cut(s) 1264, 1303, 1313
BseCI ATCGAT 2 cut(s) 624, 654
BseDI CCNNGG 4 cut(s) 212, 981, 1301, 1321
BseGI GGATG 3 cut(s) 731, 1272, 1308
BseJI GATNNNNATC 2 cut(s) 620, 650
BseMII CTCAG 3 cut(s) 38, 137, 143
BseRI GAGGAG 1 cut(s) 95
BseXI GCAGC 3 cut(s) 302, 881, 1346
BshFI GGCC 2 cut(s) 413, 988
BshNI GGYRCC 1 cut(s) 1192
BshVI ATCGAT 2 cut(s) 624, 654
BsiHKAI GWGCWC 1 cut(s) 1242
BsiHKCI CYCGRG 2 cut(s) 281, 764
BsiSI CCGG 1 cut(s) 775
BslFI GGGAC 2 cut(s) 777, 926
BsmAI GTCTC 1 cut(s) 138
BsmFI GGGAC 2 cut(s) 777, 926
BsmI GAATGC 1 cut(s) 1353
BsnI GGCC 2 cut(s) 413, 988
BsoBI CYCGRG 2 cut(s) 281, 764
Bsp1286I GDGCHC 1 cut(s) 1242
Bsp13I TCCGGA 1 cut(s) 774
Bsp1720I GCTNAGC 1 cut(s) 123
Bsp19I CCATGG 1 cut(s) 981
BspACI CCGC 4 cut(s) 602, 847, 1350, 1382
BspANI GGCC 2 cut(s) 413, 988
BspCNI CTCAG 3 cut(s) 39, 136, 142
BspDI ATCGAT 2 cut(s) 624, 654
BspEI TCCGGA 1 cut(s) 774
BspLI GGNNCC 5 cut(s) 165, 793, 878, 987, 1194
BspOI GCTAGC 1 cut(s) 122
BspPI GGATC 4 cut(s) 148, 516, 871, 884
BspQI GCTCTTC 2 cut(s) 741, 1230
BspT107I GGYRCC 1 cut(s) 1192
BssECI CCNNGG 4 cut(s) 212, 981, 1301, 1321
BssNI GRCGYC 1 cut(s) 807
BssT1I CCWWGG 3 cut(s) 212, 981, 1321
Bst2UI CCWGG 3 cut(s) 1264, 1303, 1313
Bst4CI ACNGT 1 cut(s) 69
Bst6I CTCTTC 2 cut(s) 741, 1230
BstACI GRCGYC 1 cut(s) 807
BstC8I GCNNGC 6 cut(s) 120, 264, 288, 753, 1120, 1393
BstDEI CTNAG 8 cut(s) 47, 75, 123, 129, 433, 950, 990, 1109
BstDSI CCRYGG 1 cut(s) 981
BstEII GGTNACC 1 cut(s) 1048
BstF5I GGATG 3 cut(s) 731, 1272, 1308
BstMAI GTCTC 1 cut(s) 138
BstMWI GCNNNNNNNGC 2 cut(s) 124, 1397
BstNI CCWGG 3 cut(s) 1264, 1303, 1313
BstNSI RCATGY 1 cut(s) 175
BstPI GGTNACC 1 cut(s) 1048
BstSCI CCNGG 3 cut(s) 1262, 1301, 1311
BstV1I GCAGC 3 cut(s) 302, 881, 1346
BstV2I GAAGAC 3 cut(s) 21, 612, 947
BstX2I RGATCY 2 cut(s) 153, 876
BstXI CCANNNNNNTGG 2 cut(s) 311, 742
BstYI RGATCY 2 cut(s) 153, 876
Bsu15I ATCGAT 2 cut(s) 624, 654
BsuRI GGCC 2 cut(s) 413, 988
BsuTUI ATCGAT 2 cut(s) 624, 654
BtgI CCRYGG 1 cut(s) 981
BtgZI GCGATG 2 cut(s) 815, 1410
BtrI CACGTC 1 cut(s) 716
BtsCI GGATG 3 cut(s) 731, 1272, 1308
BtsIMutI CAGTG 1 cut(s) 1076
Cac8I GCNNGC 6 cut(s) 120, 264, 288, 753, 1120, 1393
Cfr13I GGNCC 6 cut(s) 230, 396, 412, 791, 986, 1305
ClaI ATCGAT 2 cut(s) 624, 654
CseI GACGC 1 cut(s) 815
Csp6I GTAC 4 cut(s) 1124, 1182, 1366, 1411
CviAII CATG 6 cut(s) 19, 28, 172, 742, 982, 1088
CviQI GTAC 4 cut(s) 1124, 1182, 1366, 1411
DdeI CTNAG 8 cut(s) 47, 75, 123, 129, 433, 950, 990, 1109
DraI TTTAAA 1 cut(s) 885
DrdI GACNNNNNNGTC 1 cut(s) 1046
DseDI GACNNNNNNGTC 1 cut(s) 1046
Eam1104I CTCTTC 2 cut(s) 741, 1230
EarI CTCTTC 2 cut(s) 741, 1230
EciI GGCGGA 1 cut(s) 1371
Eco130I CCWWGG 3 cut(s) 212, 981, 1321
Eco47I GGWCC 4 cut(s) 230, 396, 791, 1305
Eco57I CTGAAG 2 cut(s) 345, 593
Eco88I CYCGRG 2 cut(s) 281, 764
Eco91I GGTNACC 1 cut(s) 1048
EcoO109I RGGNCCY 4 cut(s) 396, 412, 791, 986
EcoO65I GGTNACC 1 cut(s) 1048
EcoRI GAATTC 1 cut(s) 491
EcoRII CCWGG 3 cut(s) 1262, 1301, 1311
EcoT14I CCWWGG 3 cut(s) 212, 981, 1321
EcoT22I ATGCAT 1 cut(s) 477
ErhI CCWWGG 3 cut(s) 212, 981, 1321
FaeI CATG 6 cut(s) 22, 31, 175, 745, 985, 1091
FaqI GGGAC 2 cut(s) 777, 926
FatI CATG 6 cut(s) 18, 27, 171, 741, 981, 1087
FauNDI CATATG 1 cut(s) 1061
FbaI TGATCA 1 cut(s) 1084
FblI GTMKAC 1 cut(s) 972
Fnu4HI GCNGC 4 cut(s) 291, 870, 1335, 1351
FokI GGATG 3 cut(s) 718, 1279, 1295
Fsp4HI GCNGC 4 cut(s) 291, 870, 1335, 1351
FspBI CTAG 7 cut(s) 119, 545, 788, 891, 932, 1070, 1331
GluI GCNGC 4 cut(s) 291, 870, 1335, 1351
HaeIII GGCC 2 cut(s) 413, 988
HapII CCGG 1 cut(s) 775
HgaI GACGC 1 cut(s) 815
Hin1I GRCGYC 1 cut(s) 807
Hin1II CATG 6 cut(s) 22, 31, 175, 745, 985, 1091
HincII GTYRAC 1 cut(s) 719
HindII GTYRAC 1 cut(s) 719
HinfI GANTC 3 cut(s) 945, 977, 1073
HpaII CCGG 1 cut(s) 775
HphI GGTGA 2 cut(s) 176, 1042
Hpy166II GTNNAC 3 cut(s) 719, 973, 1368
Hpy188I TCNGA 3 cut(s) 48, 179, 1359
Hpy8I GTNNAC 3 cut(s) 719, 973, 1368
Hpy99I CGWCG 2 cut(s) 410, 726
HpyCH4III ACNGT 1 cut(s) 69
HpyCH4IV ACGT 1 cut(s) 715
HpyCH4V TGCA 5 cut(s) 334, 454, 475, 524, 1091
HpyF10VI GCNNNNNNNGC 2 cut(s) 124, 1397
HpyF3I CTNAG 8 cut(s) 47, 75, 123, 129, 433, 950, 990, 1109
HpySE526I ACGT 1 cut(s) 715
Hsp92I GRCGYC 1 cut(s) 807
Hsp92II CATG 6 cut(s) 22, 31, 175, 745, 985, 1091
Kpn2I TCCGGA 1 cut(s) 774
Ksp22I TGATCA 1 cut(s) 1084
LguI GCTCTTC 2 cut(s) 741, 1230
LmnI GCTCC 3 cut(s) 43, 180, 859
Lsp1109I GCAGC 3 cut(s) 302, 881, 1346
LweI GCATC 2 cut(s) 60, 1387
MaeI CTAG 7 cut(s) 119, 545, 788, 891, 932, 1070, 1331
MaeII ACGT 1 cut(s) 715
MaeIII GTNAC 2 cut(s) 1048, 1280
MflI RGATCY 2 cut(s) 153, 876
MhlI GDGCHC 1 cut(s) 1242
MluCI AATT 6 cut(s) 42, 296, 491, 1000, 1229, 1274
MlyI GAGTC 1 cut(s) 971
MmeI TCCRAC 1 cut(s) 328
Mph1103I ATGCAT 1 cut(s) 477
MroI TCCGGA 1 cut(s) 774
MseI TTAA 5 cut(s) 470, 864, 884, 1101, 1346
MslI CAYNNNNRTG 2 cut(s) 740, 1092
MspA1I CMGCKG 1 cut(s) 262
MspI CCGG 1 cut(s) 775
MspR9I CCNGG 3 cut(s) 1264, 1303, 1313
Mva1269I GAATGC 1 cut(s) 1353
MvaI CCWGG 3 cut(s) 1264, 1303, 1313
MwoI GCNNNNNNNGC 2 cut(s) 124, 1397
NcoI CCATGG 1 cut(s) 981
NdeI CATATG 1 cut(s) 1061
NheI GCTAGC 1 cut(s) 118
NlaIII CATG 6 cut(s) 22, 31, 175, 745, 985, 1091
NlaIV GGNNCC 5 cut(s) 165, 793, 878, 987, 1194
NmuCI GTSAC 2 cut(s) 1048, 1280
NsiI ATGCAT 1 cut(s) 477
NspI RCATGY 1 cut(s) 175
PaeR7I CTCGAG 2 cut(s) 281, 764
PciSI GCTCTTC 2 cut(s) 741, 1230
PcsI WCGNNNNNNNCGW 1 cut(s) 721
PctI GAATGC 1 cut(s) 1353
PfeI GAWTC 2 cut(s) 945, 1073
PkrI GCNGC 4 cut(s) 292, 871, 1336, 1352
PleI GAGTC 1 cut(s) 971
PpsI GAGTC 1 cut(s) 971
PpuMI RGGWCCY 2 cut(s) 396, 791
Psp5II RGGWCCY 2 cut(s) 396, 791
Psp6I CCWGG 3 cut(s) 1262, 1301, 1311
PspEI GGTNACC 1 cut(s) 1048
PspGI CCWGG 3 cut(s) 1262, 1301, 1311
PspN4I GGNNCC 5 cut(s) 165, 793, 878, 987, 1194
PspPI GGNCC 6 cut(s) 230, 396, 412, 791, 986, 1305
PspPPI RGGWCCY 2 cut(s) 396, 791
PspXI VCTCGAGB 1 cut(s) 281
PsuI RGATCY 2 cut(s) 153, 876
PvuII CAGCTG 1 cut(s) 262
RsaI GTAC 4 cut(s) 1125, 1183, 1367, 1412
RsaNI GTAC 4 cut(s) 1124, 1182, 1366, 1411
RseI CAYNNNNRTG 2 cut(s) 740, 1092
SapI GCTCTTC 2 cut(s) 741, 1230
SaqAI TTAA 5 cut(s) 470, 864, 884, 1101, 1346
SatI GCNGC 4 cut(s) 291, 870, 1335, 1351
Sau96I GGNCC 6 cut(s) 230, 396, 412, 791, 986, 1305
ScaI AGTACT 1 cut(s) 1412
SchI GAGTC 1 cut(s) 971
ScrFI CCNGG 3 cut(s) 1264, 1303, 1313
SduI GDGCHC 1 cut(s) 1242
SfaNI GCATC 2 cut(s) 60, 1387
Sfr274I CTCGAG 2 cut(s) 281, 764
SinI GGWCC 4 cut(s) 230, 396, 791, 1305
SlaI CTCGAG 2 cut(s) 281, 764
SmiMI CAYNNNNRTG 2 cut(s) 740, 1092
SmlI CTYRAG 3 cut(s) 281, 764, 907
SmoI CTYRAG 3 cut(s) 281, 764, 907
Sse9I AATT 6 cut(s) 42, 296, 491, 1000, 1229, 1274
SsiI CCGC 4 cut(s) 602, 847, 1350, 1382
SspMI CTAG 7 cut(s) 119, 545, 788, 891, 932, 1070, 1331
StyD4I CCNGG 3 cut(s) 1262, 1301, 1311
StyI CCWWGG 3 cut(s) 212, 981, 1321
TaaI ACNGT 1 cut(s) 69
TaiI ACGT 1 cut(s) 718
TaqI TCGA 8 cut(s) 195, 282, 319, 624, 654, 678, 765, 1215
TasI AATT 6 cut(s) 42, 296, 491, 1000, 1229, 1274
TatI WGTACW 1 cut(s) 1410
TauI GCSGC 1 cut(s) 1353
TfiI GAWTC 2 cut(s) 945, 1073
Tru1I TTAA 5 cut(s) 470, 864, 884, 1101, 1346
Tru9I TTAA 5 cut(s) 470, 864, 884, 1101, 1346
TscAI CASTG 1 cut(s) 1083
TseFI GTSAC 2 cut(s) 1048, 1280
TseI GCWGC 3 cut(s) 290, 869, 1334
Tsp45I GTSAC 2 cut(s) 1048, 1280
TspDTI ATGAA 6 cut(s) 44, 48, 448, 599, 603, 1218
TspRI CASTG 1 cut(s) 1083
VpaK11BI GGWCC 4 cut(s) 230, 396, 791, 1305
XapI RAATTY 3 cut(s) 296, 491, 1000
XceI RCATGY 1 cut(s) 175
XcmI CCANNNNNNNNNTGG 1 cut(s) 1040
XhoI CTCGAG 2 cut(s) 281, 764
XmiI GTMKAC 1 cut(s) 972
XspI CTAG 7 cut(s) 119, 545, 788, 891, 932, 1070, 1331
ZrmI AGTACT 1 cut(s) 1412
Zsp2I ATGCAT 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.