Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001605

Physical Location & Seq

Genomic Coordinates Forward (+)

49987067 .. 49987894

Gene Structure 828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00118460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGAGCAAAAGTGACAAAGCGGAAGAGTTGAAGATCGCAATTGCTGATTTTGTTCAAAAGAACATCGACAAAATATCAAAAAGGCACATAGACAAAAGAACACGTCAAGCAGGAGGTACAGTCATAAACGTGGAAGAGCCCAATCATCTTCTCGAGCTTCTCCGGACAGAAATGCTAGGTCCCAAAAAATCTGACGCCGAGGAGAATATACATAAACATCGCCGACGATCGTTCCGCAACATACAGGAGCTTAAAGCAGCAGGGATCCATTTAAAGCCTAGTAAGAAAAGCACCTTGAGGGACATATCTTTTACTTCTCTAGGCTTTGTAGGATTCCTATATCTTCCACCAATATCGGTAGACGACTCCATGGGGCCTAAGTTCATGAATATGATAGCCTATGAGATGTGTCCAGATTTCCAAAATGACTTTGGGGTCACCTCTTACATATGCTTCCTGGATTCACTGATAGATCATGCAGATGACGTTAAACAGCTAAGGGCGGCAGGCGTACTACACAACTTTCTAGGGAGTGATGGAGAGGTGGCTCAACTTTTCAACGAGATAGGTACTGACTTGGTGCCTAATAGTGAAACATACCTCAGTGTCAAATCCAAATTAGAAAAGCACTACAAAACCAAGTGGAAAACCTGGATGGCTCAATTCTGTCACGAACATTTCAGTAGTCCCTGGACTATCCTGGCTTTCCTTGGTGTTCTAGCAGCTCTGGGGTTAAGCGGCATTCAGACTTGGTACACAATCAATTCTCCGCCCGCTGCCTGCGATGCTGTATGCGAGTACTTGAAGAAACAGCTAAAAATAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

275

Amino Acids

31.12

Weight (kDa)

7.68

Isoelectric Point (pI)

48.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF247	PF03140	14 - 243	1.1e-55	Plant protein of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001605)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02910 FvH4_6g25140
malus_domestica	MD00G1049100.v1.1 MD02G1233700.v1.1 MD07G1070100.v1.1 MD12G1022100.v1.1
prunus_persica	Prupe.7G045600_v2.0.a1 Prupe.7G045700_v2.0.a1 Prupe.7G045800_v2.0.a1 Prupe.7G046000_v2.0.a1 Prupe.8G075900_v2.0.a1 Prupe.8G076000_v2.0.a1
pyrus_communis	pycom12g02050 pycom12g07700 pycom12g07720 pycom14g07350 pycom14g07360
rosa_chinensis	RchiOBHm_Chr2g0125011
rosa_laevigata	RLG00000009906 RLG00000018842
rosa_multiflora	Rmu_sc0000796.1_g000003 Rmu_sc0000796.1_g000022 Rmu_sc0000796.1_g000026 Rmu_sc0001251.1_g000010 Rmu_sc0001251.1_g000012 Rmu_sc0010311.1_g000001 Rmu_sc0010311.1_g000003 Rmu_sc0010311.1_g000008 Rmu_sc0010311.1_g000010
rosa_roxburghii	Rroxscaffold_2G00118310 Rroxscaffold_2G00118330 Rroxscaffold_2G00118420 Rroxscaffold_2G00118460 Rroxscaffold_2G00118760
rosa_rugosa	Rorug02G0254900
rosa_samantha	Rh2AG313200 Rh2AG313500 Rh2BG321400 Rh2BG321800 Rh2CG303200 Rh2CG303500 Rh2CG303900 Rh2CG304000 Rh2DG339200 Rh2DG339500 Rh2DG340000 Rh2DG340100
rosa_wichuraiana	Rw2G025320 Rw2G025330 Rw2G025360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	434
AccB1I	GGYRCC	1 cut(s)	580
AccI	GTMKAC	1 cut(s)	360
AccIII	TCCGGA	1 cut(s)	162
AciI	CCGC	6 cut(s)	20, 235, 503, 738, 770, 774
AclWI	GGATC	2 cut(s)	259, 272
AcyI	GRCGYC	1 cut(s)	195
AfaI	GTAC	5 cut(s)	118, 513, 571, 755, 800
AflIII	ACRYGT	1 cut(s)	101
AgsI	TTSAA	4 cut(s)	31, 56, 559, 805
AjiI	CACGTC	1 cut(s)	104
AjnI	CCWGG	4 cut(s)	456, 650, 689, 699
AluBI	AGCT	5 cut(s)	157, 250, 496, 725, 814
AluI	AGCT	5 cut(s)	157, 250, 496, 725, 814
AlwI	GGATC	2 cut(s)	259, 272
Ama87I	CYCGRG	1 cut(s)	152
Aor13HI	TCCGGA	1 cut(s)	162
AoxI	GGCC	1 cut(s)	374
ApeKI	GCWGC	3 cut(s)	257, 722, 776
AspS9I	GGNCC	2 cut(s)	179, 374
AsuHPI	GGTGA	1 cut(s)	430
AvaI	CYCGRG	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	179
BamHI	GGATCC	1 cut(s)	264
BanI	GGYRCC	1 cut(s)	580
BanII	GRGCYC	1 cut(s)	141
BbvI	GCAGC	3 cut(s)	269, 734, 763
BccI	CCATC	2 cut(s)	530, 649
BciT130I	CCWGG	4 cut(s)	458, 652, 691, 701
BfaI	CTAG	5 cut(s)	176, 279, 320, 527, 719
BisI	GCNGC	5 cut(s)	258, 504, 723, 739, 777
BlsI	GCNGC	5 cut(s)	259, 505, 724, 740, 778
BmcAI	AGTACT	1 cut(s)	800
Bme1390I	CCNGG	4 cut(s)	458, 652, 691, 701
Bme18I	GGWCC	1 cut(s)	179
BmeT110I	CYCGRG	1 cut(s)	152
BmgBI	CACGTC	1 cut(s)	104
BmgT120I	GGNCC	2 cut(s)	179, 374
BmiI	GGNNCC	4 cut(s)	181, 266, 375, 582
BmrFI	CCNGG	4 cut(s)	458, 652, 691, 701
BmsI	GCATC	1 cut(s)	775
Bpu10I	CCTNAGC	1 cut(s)	497
BpuEI	CTTGAG	1 cut(s)	316
BsaHI	GRCGYC	1 cut(s)	195
BsaJI	CCNNGG	4 cut(s)	198, 369, 689, 709
BsaWI	WCCGGW	1 cut(s)	162
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
BseAI	TCCGGA	1 cut(s)	162
BseBI	CCWGG	4 cut(s)	458, 652, 691, 701
BseDI	CCNNGG	4 cut(s)	198, 369, 689, 709
BseGI	GGATG	1 cut(s)	660
BseMII	CTCAG	1 cut(s)	616
BseRI	GAGGAG	1 cut(s)	215
BseXI	GCAGC	3 cut(s)	269, 734, 763
Bsh1285I	CGRYCG	1 cut(s)	230
BshFI	GGCC	1 cut(s)	376
BshNI	GGYRCC	1 cut(s)	580
BsiEI	CGRYCG	1 cut(s)	230
BsiHKCI	CYCGRG	1 cut(s)	152
BsiSI	CCGG	1 cut(s)	163
BslFI	GGGAC	3 cut(s)	165, 314, 672
BsmFI	GGGAC	3 cut(s)	165, 314, 672
BsmI	GAATGC	1 cut(s)	741
BsnI	GGCC	1 cut(s)	376
BsoBI	CYCGRG	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp13I	TCCGGA	1 cut(s)	162
Bsp143I	GATC	4 cut(s)	33, 227, 264, 472
Bsp19I	CCATGG	1 cut(s)	369
BspACI	CCGC	6 cut(s)	20, 235, 503, 738, 770, 774
BspANI	GGCC	1 cut(s)	376
BspCNI	CTCAG	1 cut(s)	615
BspEI	TCCGGA	1 cut(s)	162
BspHI	TCATGA	1 cut(s)	384
BspLI	GGNNCC	4 cut(s)	181, 266, 375, 582
BspPI	GGATC	2 cut(s)	259, 272
BspQI	GCTCTTC	1 cut(s)	129
BspT107I	GGYRCC	1 cut(s)	580
BssECI	CCNNGG	4 cut(s)	198, 369, 689, 709
BssMI	GATC	4 cut(s)	33, 227, 264, 472
BssNI	GRCGYC	1 cut(s)	195
BssT1I	CCWWGG	2 cut(s)	369, 709
Bst2UI	CCWGG	4 cut(s)	458, 652, 691, 701
Bst4CI	ACNGT	1 cut(s)	121
Bst6I	CTCTTC	2 cut(s)	18, 129
BstACI	GRCGYC	1 cut(s)	195
BstC8I	GCNNGC	3 cut(s)	508, 774, 781
BstDEI	CTNAG	3 cut(s)	378, 497, 602
BstDSI	CCRYGG	1 cut(s)	369
BstEII	GGTNACC	1 cut(s)	436
BstF5I	GGATG	1 cut(s)	660
BstKTI	GATC	4 cut(s)	36, 230, 267, 475
BstMBI	GATC	4 cut(s)	33, 227, 264, 472
BstMCI	CGRYCG	1 cut(s)	230
BstMWI	GCNNNNNNNGC	1 cut(s)	785
BstNI	CCWGG	4 cut(s)	458, 652, 691, 701
BstPI	GGTNACC	1 cut(s)	436
BstSCI	CCNGG	4 cut(s)	456, 650, 689, 699
BstV1I	GCAGC	3 cut(s)	269, 734, 763
BstX2I	RGATCY	1 cut(s)	264
BstYI	RGATCY	1 cut(s)	264
BsuRI	GGCC	1 cut(s)	376
BtgI	CCRYGG	1 cut(s)	369
BtgZI	GCGATG	2 cut(s)	203, 798
BtrI	CACGTC	1 cut(s)	104
BtsCI	GGATG	1 cut(s)	660
BtsIMutI	CAGTG	2 cut(s)	464, 610
Cac8I	GCNNGC	3 cut(s)	508, 774, 781
CciI	TCATGA	1 cut(s)	384
Cfr13I	GGNCC	2 cut(s)	179, 374
CseI	GACGC	1 cut(s)	203
Csp6I	GTAC	5 cut(s)	117, 512, 570, 754, 799
CviAII	CATG	3 cut(s)	370, 385, 476
CviQI	GTAC	5 cut(s)	117, 512, 570, 754, 799
DdeI	CTNAG	3 cut(s)	378, 497, 602
DpnI	GATC	4 cut(s)	35, 229, 266, 474
DpnII	GATC	4 cut(s)	33, 227, 264, 472
DraI	TTTAAA	1 cut(s)	273
DrdI	GACNNNNNNGTC	1 cut(s)	434
DseDI	GACNNNNNNGTC	1 cut(s)	434
Eam1104I	CTCTTC	2 cut(s)	18, 129
EarI	CTCTTC	2 cut(s)	18, 129
EciI	GGCGGA	1 cut(s)	759
Eco130I	CCWWGG	2 cut(s)	369, 709
Eco24I	GRGCYC	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	179
Eco88I	CYCGRG	1 cut(s)	152
Eco91I	GGTNACC	1 cut(s)	436
EcoO109I	RGGNCCY	2 cut(s)	179, 374
EcoO65I	GGTNACC	1 cut(s)	436
EcoRII	CCWGG	4 cut(s)	456, 650, 689, 699
EcoT14I	CCWWGG	2 cut(s)	369, 709
EcoT38I	GRGCYC	1 cut(s)	141
ErhI	CCWWGG	2 cut(s)	369, 709
FaeI	CATG	3 cut(s)	373, 388, 479
FaqI	GGGAC	3 cut(s)	165, 314, 672
FatI	CATG	3 cut(s)	369, 384, 475
FauI	CCCGC	1 cut(s)	781
FauNDI	CATATG	1 cut(s)	449
FblI	GTMKAC	1 cut(s)	360
Fnu4HI	GCNGC	5 cut(s)	258, 504, 723, 739, 777
FokI	GGATG	1 cut(s)	667
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	5 cut(s)	258, 504, 723, 739, 777
FspBI	CTAG	5 cut(s)	176, 279, 320, 527, 719
GluI	GCNGC	5 cut(s)	258, 504, 723, 739, 777
HaeIII	GGCC	1 cut(s)	376
HapII	CCGG	1 cut(s)	163
HgaI	GACGC	1 cut(s)	203
Hin1I	GRCGYC	1 cut(s)	195
Hin1II	CATG	3 cut(s)	373, 388, 479
HinfI	GANTC	3 cut(s)	333, 365, 461
HpaII	CCGG	1 cut(s)	163
HphI	GGTGA	1 cut(s)	430
Hpy166II	GTNNAC	2 cut(s)	361, 756
Hpy188I	TCNGA	2 cut(s)	193, 747
Hpy188III	TCNNGA	5 cut(s)	152, 163, 385, 413, 671
Hpy8I	GTNNAC	2 cut(s)	361, 756
Hpy99I	CGWCG	1 cut(s)	228
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4IV	ACGT	3 cut(s)	103, 129, 486
HpyCH4V	TGCA	1 cut(s)	479
HpyF10VI	GCNNNNNNNGC	1 cut(s)	785
HpyF3I	CTNAG	3 cut(s)	378, 497, 602
HpySE526I	ACGT	3 cut(s)	103, 129, 486
Hsp92I	GRCGYC	1 cut(s)	195
Hsp92II	CATG	3 cut(s)	373, 388, 479
Kpn2I	TCCGGA	1 cut(s)	162
Kzo9I	GATC	4 cut(s)	33, 227, 264, 472
LguI	GCTCTTC	1 cut(s)	129
LmnI	GCTCC	1 cut(s)	247
Lsp1109I	GCAGC	3 cut(s)	269, 734, 763
LweI	GCATC	1 cut(s)	775
MaeI	CTAG	5 cut(s)	176, 279, 320, 527, 719
MaeII	ACGT	3 cut(s)	103, 129, 486
MaeIII	GTNAC	3 cut(s)	11, 436, 668
MalI	GATC	4 cut(s)	35, 229, 266, 474
MboI	GATC	4 cut(s)	33, 227, 264, 472
MboII	GAAGA	6 cut(s)	35, 43, 140, 146, 335, 817
MfeI	CAATTG	1 cut(s)	39
MflI	RGATCY	1 cut(s)	264
MhlI	GDGCHC	1 cut(s)	141
MluCI	AATT	4 cut(s)	39, 617, 662, 763
MlyI	GAGTC	1 cut(s)	359
MnlI	CCTC	6 cut(s)	107, 193, 291, 451, 535, 611
MroI	TCCGGA	1 cut(s)	162
MseI	TTAA	4 cut(s)	252, 272, 489, 734
MslI	CAYNNNNRTG	3 cut(s)	128, 389, 480
MspA1I	CMGCKG	1 cut(s)	776
MspI	CCGG	1 cut(s)	163
MspR9I	CCNGG	4 cut(s)	458, 652, 691, 701
MunI	CAATTG	1 cut(s)	39
Mva1269I	GAATGC	1 cut(s)	741
MvaI	CCWGG	4 cut(s)	458, 652, 691, 701
MwoI	GCNNNNNNNGC	1 cut(s)	785
NcoI	CCATGG	1 cut(s)	369
NdeI	CATATG	1 cut(s)	449
NdeII	GATC	4 cut(s)	33, 227, 264, 472
NlaIII	CATG	3 cut(s)	373, 388, 479
NlaIV	GGNNCC	4 cut(s)	181, 266, 375, 582
NmeAIII	GCCGAG	1 cut(s)	223
NmuCI	GTSAC	3 cut(s)	11, 436, 668
PaeR7I	CTCGAG	1 cut(s)	152
PagI	TCATGA	1 cut(s)	384
PciSI	GCTCTTC	1 cut(s)	129
PctI	GAATGC	1 cut(s)	741
PfeI	GAWTC	2 cut(s)	333, 461
PfoI	TCCNGGA	1 cut(s)	456
PkrI	GCNGC	5 cut(s)	259, 505, 724, 740, 778
Ple19I	CGATCG	1 cut(s)	230
PleI	GAGTC	1 cut(s)	359
PpsI	GAGTC	1 cut(s)	359
PpuMI	RGGWCCY	1 cut(s)	179
Psp5II	RGGWCCY	1 cut(s)	179
Psp6I	CCWGG	4 cut(s)	456, 650, 689, 699
PspEI	GGTNACC	1 cut(s)	436
PspGI	CCWGG	4 cut(s)	456, 650, 689, 699
PspN4I	GGNNCC	4 cut(s)	181, 266, 375, 582
PspPI	GGNCC	2 cut(s)	179, 374
PspPPI	RGGWCCY	1 cut(s)	179
PsuI	RGATCY	1 cut(s)	264
PvuI	CGATCG	1 cut(s)	230
RsaI	GTAC	5 cut(s)	118, 513, 571, 755, 800
RsaNI	GTAC	5 cut(s)	117, 512, 570, 754, 799
RseI	CAYNNNNRTG	3 cut(s)	128, 389, 480
SapI	GCTCTTC	1 cut(s)	129
SaqAI	TTAA	4 cut(s)	252, 272, 489, 734
SatI	GCNGC	5 cut(s)	258, 504, 723, 739, 777
Sau3AI	GATC	4 cut(s)	33, 227, 264, 472
Sau96I	GGNCC	2 cut(s)	179, 374
ScaI	AGTACT	1 cut(s)	800
SchI	GAGTC	1 cut(s)	359
ScrFI	CCNGG	4 cut(s)	458, 652, 691, 701
SduI	GDGCHC	1 cut(s)	141
SfaNI	GCATC	1 cut(s)	775
Sfr274I	CTCGAG	1 cut(s)	152
SinI	GGWCC	1 cut(s)	179
SlaI	CTCGAG	1 cut(s)	152
SmiMI	CAYNNNNRTG	3 cut(s)	128, 389, 480
SmlI	CTYRAG	2 cut(s)	152, 295
SmoI	CTYRAG	2 cut(s)	152, 295
Sse9I	AATT	4 cut(s)	39, 617, 662, 763
SsiI	CCGC	6 cut(s)	20, 235, 503, 738, 770, 774
SspMI	CTAG	5 cut(s)	176, 279, 320, 527, 719
StyD4I	CCNGG	4 cut(s)	456, 650, 689, 699
StyI	CCWWGG	2 cut(s)	369, 709
TaaI	ACNGT	1 cut(s)	121
TaiI	ACGT	3 cut(s)	106, 132, 489
TaqI	TCGA	2 cut(s)	66, 153
TasI	AATT	4 cut(s)	39, 617, 662, 763
TatI	WGTACW	1 cut(s)	798
TauI	GCSGC	2 cut(s)	506, 741
TfiI	GAWTC	2 cut(s)	333, 461
Tru1I	TTAA	4 cut(s)	252, 272, 489, 734
Tru9I	TTAA	4 cut(s)	252, 272, 489, 734
TscAI	CASTG	2 cut(s)	471, 610
TseFI	GTSAC	3 cut(s)	11, 436, 668
TseI	GCWGC	3 cut(s)	257, 722, 776
Tsp45I	GTSAC	3 cut(s)	11, 436, 668
TspDTI	ATGAA	2 cut(s)	373, 401
TspRI	CASTG	2 cut(s)	471, 610
VpaK11BI	GGWCC	1 cut(s)	179
XcmI	CCANNNNNNNNNTGG	1 cut(s)	428
XhoI	CTCGAG	1 cut(s)	152
XmiI	GTMKAC	1 cut(s)	360
XspI	CTAG	5 cut(s)	176, 279, 320, 527, 719
ZrmI	AGTACT	1 cut(s)	800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.