Rmu_sc0000796.1_g000003

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000796.1
OG0001605
Physical Location & Seq
Forward (+)
7884 .. 9248
1365 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000796.1_g000003.1.cds

Sequence Viewer

Length: 1365 bp
atggcacgaaacgaagacatggcttccatgaatggagctccaagtaggagcatcacaatccttaaggagttctatacggaggagttgttggaatcaaaagaaaggccagctcagcctcagtttcaaagctcaaatccaaagatccaaagggttcccgacatgctccgagatcacccaaatttcgagaaatactatgagccaagggcagttgcaattggtccttaccatcataataaagcaaggtgtcagctggcagagaagttcaagctcgcgctggcagcaaaatttattgaagacagcggccgtcaagttgaagatttgcacaagatcattaaggacgacatcaacacactaaagaactgctacgataaggaagcaacaaggtcctacaccgacgaggccctcacacacttgttattcttagatgggtgttcaaccttgcagttcatatactcgtttatgcagaatgagttagcagaattcaagatcaagagggatcaggttgcttttgcagaacaggatttgttcttgctagaaaaccaactcccttaccaagtcctgaagttgttgatgagcaaaagtgacaaagcggaagagttgaagttcgcaatcgatgaatttgttctaaagaagatcgacaaaatatcaaaaaggcacaaagacaaaaaaacacgtcaaccaggaggtacatcaataaacatggaagagcctgctcatcttctcgatcttctccggacagaaatgctaggtccccaaaaacctgacgcccagaagaaagaacctaaacatcgccgacaatctttacctaacatacaggagcttaaagcagcagggatctatttaaagcctagtaagagcagcaccttgcgggacatatcttttacttctctgggctttgtaggattcctaaatcttccaccaatatcggtggaggactccatggggcataagttcttgaatttgatagcctatgagatgtgtcctgatttccaaaatgactttggggtcacctcttacatatgcttcctggattcactgattaaacatgcagatgatgttaaacagctaaggaaggcaggcgtactacgcaacttacttaggaatgataaagaggtggctaaacttctcaatgagataggcactgatttggtgcctaatactgaaacataccacggtgtcaattccttgttagaaatgcactacaaggccaagtggaaaaccaagttgacagtctggatggttcaattctatcacgatcatttcagtagcccctgggctatcttggcttcactgggtgctctagcagttctggggttaaccggcatccagacttggtacacaatacatcctccgtccactgcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

454

Amino Acids

52.05

Weight (kDa)

8.08

Isoelectric Point (pI)

43.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1004
AccB1I GGYRCC 1 cut(s) 1150
AccII CGCG 1 cut(s) 272
AccIII TCCGGA 1 cut(s) 732
AciI CCGC 3 cut(s) 300, 590, 868
AclWI GGATC 3 cut(s) 136, 504, 842
AcoI YGGCCR 1 cut(s) 301
AcsI RAATTY 5 cut(s) 178, 284, 479, 617, 958
AcuI CTGAAG 1 cut(s) 581
AcyI GRCGYC 1 cut(s) 765
AdeI CACNNNGTG 1 cut(s) 1295
AfaI GTAC 3 cut(s) 688, 1083, 1337
AflII CTTAAG 1 cut(s) 62
AflIII ACRYGT 1 cut(s) 671
AgsI TTSAA 9 cut(s) 125, 265, 293, 314, 435, 484, 601, 958, 1244
AjiI CACGTC 1 cut(s) 674
AjnI CCWGG 3 cut(s) 679, 1026, 1271
AluBI AGCT 7 cut(s) 38, 110, 129, 250, 268, 820, 1066
AluI AGCT 7 cut(s) 38, 110, 129, 250, 268, 820, 1066
Alw21I GWGCWC 2 cut(s) 40, 1300
AlwI GGATC 3 cut(s) 136, 504, 842
Aor13HI TCCGGA 1 cut(s) 732
AoxI GGCC 4 cut(s) 104, 301, 399, 1206
ApeKI GCWGC 3 cut(s) 278, 827, 858
ApoI RAATTY 5 cut(s) 178, 284, 479, 617, 958
Asp700I GAANNNNTTC 1 cut(s) 621
AspLEI GCGC 1 cut(s) 274
AspS9I GGNCC 4 cut(s) 218, 384, 400, 749
AsuHPI GGTGA 2 cut(s) 164, 1000
AvaII GGWCC 3 cut(s) 218, 384, 749
BanI GGYRCC 1 cut(s) 1150
BanII GRGCYC 1 cut(s) 40
BbsI GAAGAC 2 cut(s) 21, 300
Bbv12I GWGCWC 2 cut(s) 40, 1300
BbvI GCAGC 3 cut(s) 290, 839, 870
BccI CCATC 3 cut(s) 234, 419, 1231
BceAI ACGGC 1 cut(s) 288
BciT130I CCWGG 3 cut(s) 681, 1028, 1273
BfaI CTAG 4 cut(s) 533, 746, 849, 1301
BfrI CTTAAG 1 cut(s) 62
BisI GCNGC 4 cut(s) 279, 301, 828, 859
BlpI GCTNAGC 1 cut(s) 111
BlsI GCNGC 4 cut(s) 280, 302, 829, 860
Bme1390I CCNGG 3 cut(s) 681, 1028, 1273
Bme18I GGWCC 3 cut(s) 218, 384, 749
BmgBI CACGTC 1 cut(s) 674
BmgT120I GGNCC 4 cut(s) 218, 384, 400, 749
BmiI GGNNCC 3 cut(s) 153, 751, 1152
BmrFI CCNGG 3 cut(s) 681, 1028, 1273
BmrI ACTGGG 1 cut(s) 1301
BmsI GCATC 2 cut(s) 60, 1332
BmuI ACTGGG 1 cut(s) 1301
BpiI GAAGAC 2 cut(s) 21, 300
Bpu10I CCTNAGC 1 cut(s) 1067
Bpu1102I GCTNAGC 1 cut(s) 111
Bsa29I ATCGAT 1 cut(s) 612
BsaHI GRCGYC 1 cut(s) 765
BsaJI CCNNGG 5 cut(s) 200, 939, 1171, 1271, 1272
BsaWI WCCGGW 1 cut(s) 732
BsaXI ACNNNNNCTCC 2 cut(s) 71, 101
Bse118I RCCGGY 1 cut(s) 1319
Bse1I ACTGG 1 cut(s) 1296
BseAI TCCGGA 1 cut(s) 732
BseBI CCWGG 3 cut(s) 681, 1028, 1273
BseCI ATCGAT 1 cut(s) 612
BseDI CCNNGG 5 cut(s) 200, 939, 1171, 1271, 1272
BseGI GGATG 3 cut(s) 1242, 1323, 1345
BseMII CTCAG 2 cut(s) 125, 131
BseNI ACTGG 1 cut(s) 1296
BseRI GAGGAG 1 cut(s) 95
BseX3I CGGCCG 1 cut(s) 301
BseXI GCAGC 3 cut(s) 290, 839, 870
Bsh1236I CGCG 1 cut(s) 272
Bsh1285I CGRYCG 1 cut(s) 304
BshFI GGCC 4 cut(s) 106, 303, 401, 1208
BshNI GGYRCC 1 cut(s) 1150
BshVI ATCGAT 1 cut(s) 612
BsiEI CGRYCG 1 cut(s) 304
BsiHKAI GWGCWC 2 cut(s) 40, 1300
BsiSI CCGG 2 cut(s) 733, 1320
BslFI GGGAC 2 cut(s) 735, 884
BsmFI GGGAC 2 cut(s) 735, 884
BsnI GGCC 4 cut(s) 106, 303, 401, 1208
Bsp1286I GDGCHC 2 cut(s) 40, 1300
Bsp13I TCCGGA 1 cut(s) 732
Bsp143I GATC 9 cut(s) 141, 169, 327, 486, 496, 633, 724, 834, 1255
Bsp1720I GCTNAGC 1 cut(s) 111
Bsp19I CCATGG 1 cut(s) 939
BspACI CCGC 3 cut(s) 300, 590, 868
BspANI GGCC 4 cut(s) 106, 303, 401, 1208
BspCNI CTCAG 2 cut(s) 124, 130
BspDI ATCGAT 1 cut(s) 612
BspEI TCCGGA 1 cut(s) 732
BspFNI CGCG 1 cut(s) 272
BspLI GGNNCC 3 cut(s) 153, 751, 1152
BspPI GGATC 3 cut(s) 136, 504, 842
BspQI GCTCTTC 1 cut(s) 699
BspT107I GGYRCC 1 cut(s) 1150
BspTI CTTAAG 1 cut(s) 62
BsrFI RCCGGY 1 cut(s) 1319
BsrI ACTGG 1 cut(s) 1296
BssAI RCCGGY 1 cut(s) 1319
BssECI CCNNGG 5 cut(s) 200, 939, 1171, 1271, 1272
BssMI GATC 9 cut(s) 141, 169, 327, 486, 496, 633, 724, 834, 1255
BssNI GRCGYC 1 cut(s) 765
BssT1I CCWWGG 2 cut(s) 200, 939
Bst2UI CCWGG 3 cut(s) 681, 1028, 1273
Bst4CI ACNGT 2 cut(s) 1175, 1231
Bst6I CTCTTC 2 cut(s) 588, 699
BstACI GRCGYC 1 cut(s) 765
BstAFI CTTAAG 1 cut(s) 62
BstC8I GCNNGC 6 cut(s) 108, 252, 270, 276, 711, 1078
BstDEI CTNAG 5 cut(s) 111, 117, 421, 1067, 1097
BstDSI CCRYGG 2 cut(s) 939, 1171
BstEII GGTNACC 1 cut(s) 1006
BstF5I GGATG 3 cut(s) 1242, 1323, 1345
BstFNI CGCG 1 cut(s) 272
BstHHI GCGC 1 cut(s) 274
BstKTI GATC 9 cut(s) 144, 172, 330, 489, 499, 636, 727, 837, 1258
BstMBI GATC 9 cut(s) 141, 169, 327, 486, 496, 633, 724, 834, 1255
BstMCI CGRYCG 1 cut(s) 304
BstMWI GCNNNNNNNGC 4 cut(s) 112, 278, 1086, 1283
BstNI CCWGG 3 cut(s) 681, 1028, 1273
BstNSI RCATGY 2 cut(s) 163, 1049
BstPI GGTNACC 1 cut(s) 1006
BstSCI CCNGG 3 cut(s) 679, 1026, 1271
BstUI CGCG 1 cut(s) 272
BstV1I GCAGC 3 cut(s) 290, 839, 870
BstV2I GAAGAC 2 cut(s) 21, 300
BstX2I RGATCY 2 cut(s) 141, 834
BstYI RGATCY 2 cut(s) 141, 834
BstZI CGGCCG 1 cut(s) 301
Bsu15I ATCGAT 1 cut(s) 612
BsuRI GGCC 4 cut(s) 106, 303, 401, 1208
BsuTUI ATCGAT 1 cut(s) 612
BtgI CCRYGG 2 cut(s) 939, 1171
BtgZI GCGATG 1 cut(s) 773
BtrI CACGTC 1 cut(s) 674
BtsCI GGATG 3 cut(s) 1242, 1323, 1345
BtsI GCAGTG 1 cut(s) 1356
BtsIMutI CAGTG 4 cut(s) 1034, 1140, 1289, 1356
Cac8I GCNNGC 6 cut(s) 108, 252, 270, 276, 711, 1078
CfoI GCGC 1 cut(s) 274
Cfr10I RCCGGY 1 cut(s) 1319
Cfr13I GGNCC 4 cut(s) 218, 384, 400, 749
ClaI ATCGAT 1 cut(s) 612
CseI GACGC 1 cut(s) 773
Csp6I GTAC 3 cut(s) 687, 1082, 1336
CspCI CAANNNNNGTGG 2 cut(s) 909, 944
CviAII CATG 6 cut(s) 19, 28, 160, 700, 940, 1046
CviQI GTAC 3 cut(s) 687, 1082, 1336
DdeI CTNAG 5 cut(s) 111, 117, 421, 1067, 1097
DpnI GATC 9 cut(s) 143, 171, 329, 488, 498, 635, 726, 836, 1257
DpnII GATC 9 cut(s) 141, 169, 327, 486, 496, 633, 724, 834, 1255
DraI TTTAAA 1 cut(s) 843
DraIII CACNNNGTG 1 cut(s) 1295
DrdI GACNNNNNNGTC 1 cut(s) 1004
DseDI GACNNNNNNGTC 1 cut(s) 1004
EaeI YGGCCR 1 cut(s) 301
EagI CGGCCG 1 cut(s) 301
Eam1104I CTCTTC 2 cut(s) 588, 699
EarI CTCTTC 2 cut(s) 588, 699
Ecl136II GAGCTC 1 cut(s) 38
EclXI CGGCCG 1 cut(s) 301
Eco130I CCWWGG 2 cut(s) 200, 939
Eco24I GRGCYC 1 cut(s) 40
Eco47I GGWCC 3 cut(s) 218, 384, 749
Eco52I CGGCCG 1 cut(s) 301
Eco53kI GAGCTC 1 cut(s) 38
Eco57I CTGAAG 1 cut(s) 581
Eco91I GGTNACC 1 cut(s) 1006
EcoICRI GAGCTC 1 cut(s) 38
EcoO109I RGGNCCY 3 cut(s) 384, 400, 749
EcoO65I GGTNACC 1 cut(s) 1006
EcoRI GAATTC 1 cut(s) 479
EcoRII CCWGG 3 cut(s) 679, 1026, 1271
EcoT14I CCWWGG 2 cut(s) 200, 939
EcoT38I GRGCYC 1 cut(s) 40
ErhI CCWWGG 2 cut(s) 200, 939
FaeI CATG 6 cut(s) 22, 31, 163, 703, 943, 1049
FaqI GGGAC 2 cut(s) 735, 884
FatI CATG 6 cut(s) 18, 27, 159, 699, 939, 1045
FauI CCCGC 1 cut(s) 861
FauNDI CATATG 1 cut(s) 1019
Fnu4HI GCNGC 4 cut(s) 279, 301, 828, 859
FokI GGATG 3 cut(s) 1249, 1310, 1332
FriOI GRGCYC 1 cut(s) 40
Fsp4HI GCNGC 4 cut(s) 279, 301, 828, 859
FspBI CTAG 4 cut(s) 533, 746, 849, 1301
GlaI GCGC 1 cut(s) 273
GluI GCNGC 4 cut(s) 279, 301, 828, 859
HaeIII GGCC 4 cut(s) 106, 303, 401, 1208
HapII CCGG 2 cut(s) 733, 1320
HgaI GACGC 1 cut(s) 773
HhaI GCGC 1 cut(s) 274
Hin1I GRCGYC 1 cut(s) 765
Hin1II CATG 6 cut(s) 22, 31, 163, 703, 943, 1049
Hin6I GCGC 1 cut(s) 272
HinP1I GCGC 1 cut(s) 272
HincII GTYRAC 3 cut(s) 677, 1227, 1317
HindII GTYRAC 3 cut(s) 677, 1227, 1317
HinfI GANTC 4 cut(s) 92, 903, 935, 1031
HpaI GTTAAC 1 cut(s) 1317
HpaII CCGG 2 cut(s) 733, 1320
HphI GGTGA 2 cut(s) 164, 1000
Hpy166II GTNNAC 5 cut(s) 677, 1227, 1317, 1338, 1356
Hpy188I TCNGA 1 cut(s) 167
Hpy8I GTNNAC 5 cut(s) 677, 1227, 1317, 1338, 1356
Hpy99I CGWCG 1 cut(s) 398
HpyAV CCTTC 1 cut(s) 1066
HpyCH4III ACNGT 2 cut(s) 1175, 1231
HpyCH4IV ACGT 1 cut(s) 673
HpyCH4V TGCA 7 cut(s) 212, 322, 442, 463, 512, 1049, 1198
HpyF10VI GCNNNNNNNGC 4 cut(s) 112, 278, 1086, 1283
HpyF3I CTNAG 5 cut(s) 111, 117, 421, 1067, 1097
HpySE526I ACGT 1 cut(s) 673
Hsp92I GRCGYC 1 cut(s) 765
Hsp92II CATG 6 cut(s) 22, 31, 163, 703, 943, 1049
HspAI GCGC 1 cut(s) 272
Kpn2I TCCGGA 1 cut(s) 732
KspAI GTTAAC 1 cut(s) 1317
Kzo9I GATC 9 cut(s) 141, 169, 327, 486, 496, 633, 724, 834, 1255
LguI GCTCTTC 1 cut(s) 699
LmnI GCTCC 5 cut(s) 35, 43, 48, 168, 817
Lsp1109I GCAGC 3 cut(s) 290, 839, 870
LweI GCATC 2 cut(s) 60, 1332
MaeI CTAG 4 cut(s) 533, 746, 849, 1301
MaeII ACGT 1 cut(s) 673
MaeIII GTNAC 2 cut(s) 581, 1006
MalI GATC 9 cut(s) 143, 171, 329, 488, 498, 635, 726, 836, 1257
MboI GATC 9 cut(s) 141, 169, 327, 486, 496, 633, 724, 834, 1255
MfeI CAATTG 1 cut(s) 213
MflI RGATCY 2 cut(s) 141, 834
MhlI GDGCHC 2 cut(s) 40, 1300
MluCI AATT 8 cut(s) 178, 213, 284, 479, 617, 958, 1180, 1244
MlyI GAGTC 1 cut(s) 929
MmeI TCCRAC 1 cut(s) 69
MroI TCCGGA 1 cut(s) 732
MroXI GAANNNNTTC 1 cut(s) 621
MseI TTAA 7 cut(s) 63, 333, 822, 842, 1041, 1059, 1316
MslI CAYNNNNRTG 1 cut(s) 1050
MspA1I CMGCKG 2 cut(s) 250, 300
MspCI CTTAAG 1 cut(s) 62
MspI CCGG 2 cut(s) 733, 1320
MspR9I CCNGG 3 cut(s) 681, 1028, 1273
MunI CAATTG 1 cut(s) 213
MvaI CCWGG 3 cut(s) 681, 1028, 1273
MvnI CGCG 1 cut(s) 272
MwoI GCNNNNNNNGC 4 cut(s) 112, 278, 1086, 1283
NcoI CCATGG 1 cut(s) 939
NdeI CATATG 1 cut(s) 1019
NdeII GATC 9 cut(s) 141, 169, 327, 486, 496, 633, 724, 834, 1255
NlaIII CATG 6 cut(s) 22, 31, 163, 703, 943, 1049
NlaIV GGNNCC 3 cut(s) 153, 751, 1152
NmuCI GTSAC 2 cut(s) 581, 1006
NspI RCATGY 2 cut(s) 163, 1049
PasI CCCWGGG 1 cut(s) 1272
PciSI GCTCTTC 1 cut(s) 699
PdmI GAANNNNTTC 1 cut(s) 621
PfeI GAWTC 3 cut(s) 92, 903, 1031
PfoI TCCNGGA 1 cut(s) 1026
PkrI GCNGC 4 cut(s) 280, 302, 829, 860
PleI GAGTC 1 cut(s) 929
PpsI GAGTC 1 cut(s) 929
PpuMI RGGWCCY 2 cut(s) 384, 749
Psp124BI GAGCTC 1 cut(s) 40
Psp5II RGGWCCY 2 cut(s) 384, 749
Psp6I CCWGG 3 cut(s) 679, 1026, 1271
PspEI GGTNACC 1 cut(s) 1006
PspGI CCWGG 3 cut(s) 679, 1026, 1271
PspN4I GGNNCC 3 cut(s) 153, 751, 1152
PspPI GGNCC 4 cut(s) 218, 384, 400, 749
PspPPI RGGWCCY 2 cut(s) 384, 749
PsuI RGATCY 2 cut(s) 141, 834
PvuII CAGCTG 1 cut(s) 250
RsaI GTAC 3 cut(s) 688, 1083, 1337
RsaNI GTAC 3 cut(s) 687, 1082, 1336
RseI CAYNNNNRTG 1 cut(s) 1050
SacI GAGCTC 1 cut(s) 40
SapI GCTCTTC 1 cut(s) 699
SaqAI TTAA 7 cut(s) 63, 333, 822, 842, 1041, 1059, 1316
SatI GCNGC 4 cut(s) 279, 301, 828, 859
Sau3AI GATC 9 cut(s) 141, 169, 327, 486, 496, 633, 724, 834, 1255
Sau96I GGNCC 4 cut(s) 218, 384, 400, 749
SchI GAGTC 1 cut(s) 929
ScrFI CCNGG 3 cut(s) 681, 1028, 1273
SduI GDGCHC 2 cut(s) 40, 1300
SfaNI GCATC 2 cut(s) 60, 1332
SinI GGWCC 3 cut(s) 218, 384, 749
SmiMI CAYNNNNRTG 1 cut(s) 1050
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
Sse9I AATT 8 cut(s) 178, 213, 284, 479, 617, 958, 1180, 1244
SsiI CCGC 3 cut(s) 300, 590, 868
SspMI CTAG 4 cut(s) 533, 746, 849, 1301
SstI GAGCTC 1 cut(s) 40
StyD4I CCNGG 3 cut(s) 679, 1026, 1271
StyI CCWWGG 2 cut(s) 200, 939
TaaI ACNGT 2 cut(s) 1175, 1231
TaiI ACGT 1 cut(s) 676
TaqI TCGA 4 cut(s) 183, 612, 636, 723
TasI AATT 8 cut(s) 178, 213, 284, 479, 617, 958, 1180, 1244
TauI GCSGC 1 cut(s) 303
TfiI GAWTC 3 cut(s) 92, 903, 1031
Tru1I TTAA 7 cut(s) 63, 333, 822, 842, 1041, 1059, 1316
Tru9I TTAA 7 cut(s) 63, 333, 822, 842, 1041, 1059, 1316
TscAI CASTG 4 cut(s) 1041, 1147, 1296, 1363
TseFI GTSAC 2 cut(s) 581, 1006
TseI GCWGC 3 cut(s) 278, 827, 858
Tsp45I GTSAC 2 cut(s) 581, 1006
TspDTI ATGAA 3 cut(s) 44, 436, 630
TspGWI ACGGA 2 cut(s) 92, 1341
TspRI CASTG 4 cut(s) 1041, 1147, 1296, 1363
Vha464I CTTAAG 1 cut(s) 62
VpaK11BI GGWCC 3 cut(s) 218, 384, 749
XapI RAATTY 5 cut(s) 178, 284, 479, 617, 958
XceI RCATGY 2 cut(s) 163, 1049
XcmI CCANNNNNNNNNTGG 1 cut(s) 998
XmnI GAANNNNTTC 1 cut(s) 621
XspI CTAG 4 cut(s) 533, 746, 849, 1301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.