Rroxscaffold_2G00118310

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001605
Physical Location & Seq
Forward (+)
49699652 .. 49701046
1395 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00118310.1

Sequence Viewer

Length: 1395 bp
ATGGCACGAAATGAAGACATGGCTTCCATGAATGAAGCTCCAGAATGGAGCATCACAATTGATGTATCCGGCGAGGAGTTGTTCAAACACATAAAAGGAGCAAAGGAAAGGCTAGCTCAGTTTCAAAGATTAAAACCAAAGATCCAAAGGGTTCCCAACATGCTTAGAGATCACCAAAATTTTGAGAAATACTATGAGCCAAGGGCAGTAGCAATTGGTCCTTTCCATCATGATAAACCAAGGTGTCAACTGGCAGAGAATTTCAAGCTTGCACTGGCAGAAAAATTTATCGAAGAGAGCGGCCGTCAAGTTGAAGATTTGCACAAGATCATTGAGGACAACATCAACACACTAAGGGACTGCTATGATGAGGAAGCAACAAGGTCCTACACCGACGAGGCCCTCACAAACTTGTTATTCTTAGATGGATGTTCAACCTTACAGTTCATATACTCCTTCATGAAGAATGACTTACCAACTTTCAACATCAAGAGAGATCAGGTGGCTTTTGCAGAACAGGATTTGTTCTTGCTAGAAAACCAACTCCCTTACCAAGTCCTGAAGCTGTTGATGAGCTTAAGTGCCAAAGAGGGGAACTTAAAGGCCAAAATCGATGAATTTGTTGGAAGGAACATCATGGCAGCAGAAAAAACGCGTCAACCAGGAGATGGTGTCATAGACATGGAAGAGCCCACTCATCTTCTTGAGCTTCTCCGGACAAAAATGCTAGGCGGCCCCAAATCTGACAACCGCGAGGAGATAAAATCTGAAGATGGCCAACAATCATTCCGCAACATACAGGAGCTTAAAGCAGCAGGGATCCACTTGAGGCGTAGTAAGACAGGGACCTTGAGGGACATATCTTTAACTCATCCTCTAGGGCTTCTAGGCTTTGTAGGATTCCTAAATCTTCCACCAATATCAGTAGACGACTCCATGAGGCCTAAGTTCTTGAATTTGATAGCCTATGAAATGTGTCCTGATTTCCAAAATGACTCTGGTGTCACCTCTTACATATGCTTCCTCGATTCACTAATTGATCATCCAGATGATGTTAAACAGCTAAGGTCGGCACACGTACTACACAACTTACTTGGTAGTGATGAAGAGGTGGCTCAAATTTTCAATGAGATAGGTACTGACTTGGTGCCTAACAGTGACATATACCACGGTGTCAAAGTTAAATTAGAAAAGCACTACAAAAACAGGGGGAAAACCTGGATGGCTCAATTCTGTCACGATCATTTCAGTAGCCCCTGGACTATCCTGGCTTTCCTTGGTGTTCTAGCAGCTCTGGGGTTAAGCGGCATCCAGACTTGGTACACAATCAATTCTCCCTCCTCTGCCTGCGATGCTGTATGCGAGTACTTGAAGAAACAGCTAAAAATAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

464

Amino Acids

52.92

Weight (kDa)

5.59

Isoelectric Point (pI)

44.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 48 - 432 8.6e-92 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1001
AccB1I GGYRCC 1 cut(s) 1147
AccB7I CCANNNNNTGG 1 cut(s) 668
AccBSI CCGCTC 1 cut(s) 300
AccI GTMKAC 1 cut(s) 927
AccII CGCG 2 cut(s) 655, 753
AccIII TCCGGA 1 cut(s) 714
AciI CCGC 5 cut(s) 300, 732, 751, 790, 1305
AclWI GGATC 3 cut(s) 136, 814, 827
AcoI YGGCCR 2 cut(s) 301, 775
AcsI RAATTY 6 cut(s) 178, 259, 284, 617, 955, 1119
AcuI CTGAAG 2 cut(s) 581, 789
AfaI GTAC 4 cut(s) 1080, 1138, 1322, 1367
AfiI CCNNNNNNNGG 2 cut(s) 591, 668
AflII CTTAAG 1 cut(s) 577
AflIII ACRYGT 2 cut(s) 653, 1075
AgsI TTSAA 9 cut(s) 85, 125, 265, 314, 435, 484, 955, 1126, 1372
AjnI CCWGG 4 cut(s) 661, 1217, 1256, 1266
AlwI GGATC 3 cut(s) 136, 814, 827
Aor13HI TCCGGA 1 cut(s) 714
AoxI GGCC 6 cut(s) 301, 399, 603, 733, 775, 941
ApeKI GCWGC 3 cut(s) 641, 812, 1289
ApoI RAATTY 6 cut(s) 178, 259, 284, 617, 955, 1119
AspS9I GGNCC 5 cut(s) 218, 384, 400, 734, 846
AsuHPI GGTGA 2 cut(s) 164, 997
AsuNHI GCTAGC 1 cut(s) 112
AvaII GGWCC 3 cut(s) 218, 384, 846
BalI TGGCCA 1 cut(s) 777
BamHI GGATCC 1 cut(s) 819
BanI GGYRCC 1 cut(s) 1147
BanII GRGCYC 1 cut(s) 693
BbsI GAAGAC 1 cut(s) 21
BbvI GCAGC 3 cut(s) 653, 824, 1301
BccI CCATC 5 cut(s) 234, 419, 662, 767, 1216
BceAI ACGGC 1 cut(s) 288
BciT130I CCWGG 4 cut(s) 663, 1219, 1258, 1268
BciVI GTATCC 1 cut(s) 76
BclI TGATCA 1 cut(s) 1039
BfaI CTAG 6 cut(s) 113, 533, 728, 878, 887, 1286
BfrI CTTAAG 1 cut(s) 577
BfuI GTATCC 1 cut(s) 76
BisI GCNGC 6 cut(s) 301, 642, 733, 813, 1290, 1306
BlsI GCNGC 6 cut(s) 302, 643, 734, 814, 1291, 1307
BmcAI AGTACT 1 cut(s) 1367
Bme1390I CCNGG 4 cut(s) 663, 1219, 1258, 1268
Bme18I GGWCC 3 cut(s) 218, 384, 846
BmgT120I GGNCC 5 cut(s) 218, 384, 400, 734, 846
BmiI GGNNCC 5 cut(s) 153, 736, 821, 847, 1149
BmrFI CCNGG 4 cut(s) 663, 1219, 1258, 1268
BmsI GCATC 3 cut(s) 60, 1317, 1342
BmtI GCTAGC 1 cut(s) 116
BpiI GAAGAC 1 cut(s) 21
BpmI CTGGAG 1 cut(s) 24
Bpu10I CCTNAGC 1 cut(s) 1064
BpuEI CTTGAG 3 cut(s) 725, 847, 871
Bsa29I ATCGAT 1 cut(s) 612
BsaAI YACGTR 1 cut(s) 1078
BsaJI CCNNGG 5 cut(s) 200, 239, 1168, 1256, 1276
BsaWI WCCGGW 1 cut(s) 714
BsaXI ACNNNNNCTCC 2 cut(s) 657, 687
Bsc4I CCNNNNNNNGG 2 cut(s) 591, 668
Bse1I ACTGG 2 cut(s) 255, 279
BseAI TCCGGA 1 cut(s) 714
BseBI CCWGG 4 cut(s) 663, 1219, 1258, 1268
BseCI ATCGAT 1 cut(s) 612
BseDI CCNNGG 5 cut(s) 200, 239, 1168, 1256, 1276
BseGI GGATG 5 cut(s) 434, 871, 1042, 1227, 1308
BseLI CCNNNNNNNGG 2 cut(s) 591, 668
BseMII CTCAG 1 cut(s) 131
BseNI ACTGG 2 cut(s) 255, 279
BseRI GAGGAG 3 cut(s) 89, 770, 1330
BseX3I CGGCCG 1 cut(s) 301
BseXI GCAGC 3 cut(s) 653, 824, 1301
Bsh1236I CGCG 2 cut(s) 655, 753
Bsh1285I CGRYCG 1 cut(s) 304
BshFI GGCC 6 cut(s) 303, 401, 605, 735, 777, 943
BshNI GGYRCC 1 cut(s) 1147
BshVI ATCGAT 1 cut(s) 612
BsiEI CGRYCG 1 cut(s) 304
BsiSI CCGG 2 cut(s) 69, 715
BslFI GGGAC 3 cut(s) 371, 859, 869
BslI CCNNNNNNNGG 2 cut(s) 591, 668
BsmFI GGGAC 3 cut(s) 371, 859, 869
BsnI GGCC 6 cut(s) 303, 401, 605, 735, 777, 943
Bsp1286I GDGCHC 1 cut(s) 693
Bsp13I TCCGGA 1 cut(s) 714
Bsp143I GATC 7 cut(s) 141, 169, 327, 496, 819, 1039, 1240
BspACI CCGC 5 cut(s) 300, 732, 751, 790, 1305
BspANI GGCC 6 cut(s) 303, 401, 605, 735, 777, 943
BspCNI CTCAG 1 cut(s) 130
BspDI ATCGAT 1 cut(s) 612
BspEI TCCGGA 1 cut(s) 714
BspFNI CGCG 2 cut(s) 655, 753
BspHI TCATGA 2 cut(s) 229, 459
BspLI GGNNCC 5 cut(s) 153, 736, 821, 847, 1149
BspOI GCTAGC 1 cut(s) 116
BspPI GGATC 3 cut(s) 136, 814, 827
BspQI GCTCTTC 1 cut(s) 681
BspT107I GGYRCC 1 cut(s) 1147
BspTI CTTAAG 1 cut(s) 577
BsrBI CCGCTC 1 cut(s) 300
BsrI ACTGG 2 cut(s) 255, 279
BssECI CCNNGG 5 cut(s) 200, 239, 1168, 1256, 1276
BssMI GATC 7 cut(s) 141, 169, 327, 496, 819, 1039, 1240
BssT1I CCWWGG 3 cut(s) 200, 239, 1276
Bst2UI CCWGG 4 cut(s) 663, 1219, 1258, 1268
Bst4CI ACNGT 3 cut(s) 444, 1157, 1172
Bst6I CTCTTC 3 cut(s) 288, 681, 1101
BstAFI CTTAAG 1 cut(s) 577
BstBAI YACGTR 1 cut(s) 1078
BstC8I GCNNGC 3 cut(s) 114, 270, 1348
BstDEI CTNAG 6 cut(s) 117, 164, 353, 421, 945, 1064
BstDSI CCRYGG 1 cut(s) 1168
BstF5I GGATG 5 cut(s) 434, 871, 1042, 1227, 1308
BstFNI CGCG 2 cut(s) 655, 753
BstKTI GATC 7 cut(s) 144, 172, 330, 499, 822, 1042, 1243
BstMBI GATC 7 cut(s) 141, 169, 327, 496, 819, 1039, 1240
BstMCI CGRYCG 1 cut(s) 304
BstMWI GCNNNNNNNGC 1 cut(s) 1352
BstNI CCWGG 4 cut(s) 663, 1219, 1258, 1268
BstNSI RCATGY 1 cut(s) 163
BstSCI CCNGG 4 cut(s) 661, 1217, 1256, 1266
BstUI CGCG 2 cut(s) 655, 753
BstV1I GCAGC 3 cut(s) 653, 824, 1301
BstV2I GAAGAC 1 cut(s) 21
BstX2I RGATCY 2 cut(s) 141, 819
BstYI RGATCY 2 cut(s) 141, 819
BstZI CGGCCG 1 cut(s) 301
Bsu15I ATCGAT 1 cut(s) 612
BsuI GTATCC 1 cut(s) 76
BsuRI GGCC 6 cut(s) 303, 401, 605, 735, 777, 943
BsuTUI ATCGAT 1 cut(s) 612
BtgI CCRYGG 1 cut(s) 1168
BtgZI GCGATG 1 cut(s) 1365
BtsCI GGATG 5 cut(s) 434, 871, 1042, 1227, 1308
BtsIMutI CAGTG 2 cut(s) 272, 1162
Cac8I GCNNGC 3 cut(s) 114, 270, 1348
CciI TCATGA 2 cut(s) 229, 459
Cfr13I GGNCC 5 cut(s) 218, 384, 400, 734, 846
ClaI ATCGAT 1 cut(s) 612
CseI GACGC 1 cut(s) 644
Csp6I GTAC 4 cut(s) 1079, 1137, 1321, 1366
CviAII CATG 8 cut(s) 19, 28, 160, 230, 460, 637, 682, 937
CviQI GTAC 4 cut(s) 1079, 1137, 1321, 1366
DdeI CTNAG 6 cut(s) 117, 164, 353, 421, 945, 1064
DpnI GATC 7 cut(s) 143, 171, 329, 498, 821, 1041, 1242
DpnII GATC 7 cut(s) 141, 169, 327, 496, 819, 1039, 1240
DrdI GACNNNNNNGTC 1 cut(s) 1001
DseDI GACNNNNNNGTC 1 cut(s) 1001
EaeI YGGCCR 2 cut(s) 301, 775
EagI CGGCCG 1 cut(s) 301
Eam1104I CTCTTC 3 cut(s) 288, 681, 1101
EarI CTCTTC 3 cut(s) 288, 681, 1101
EclXI CGGCCG 1 cut(s) 301
Eco130I CCWWGG 3 cut(s) 200, 239, 1276
Eco147I AGGCCT 1 cut(s) 943
Eco24I GRGCYC 1 cut(s) 693
Eco47I GGWCC 3 cut(s) 218, 384, 846
Eco52I CGGCCG 1 cut(s) 301
Eco57I CTGAAG 2 cut(s) 581, 789
EcoO109I RGGNCCY 3 cut(s) 384, 400, 846
EcoRII CCWGG 4 cut(s) 661, 1217, 1256, 1266
EcoT14I CCWWGG 3 cut(s) 200, 239, 1276
EcoT38I GRGCYC 1 cut(s) 693
ErhI CCWWGG 3 cut(s) 200, 239, 1276
FaeI CATG 8 cut(s) 22, 31, 163, 233, 463, 640, 685, 940
FalI AAGNNNNNCTT 2 cut(s) 455, 487
FaqI GGGAC 3 cut(s) 371, 859, 869
FatI CATG 8 cut(s) 18, 27, 159, 229, 459, 636, 681, 936
FauNDI CATATG 1 cut(s) 1016
FbaI TGATCA 1 cut(s) 1039
FblI GTMKAC 1 cut(s) 927
Fnu4HI GCNGC 6 cut(s) 301, 642, 733, 813, 1290, 1306
FokI GGATG 5 cut(s) 441, 858, 1029, 1234, 1295
FriOI GRGCYC 1 cut(s) 693
Fsp4HI GCNGC 6 cut(s) 301, 642, 733, 813, 1290, 1306
FspBI CTAG 6 cut(s) 113, 533, 728, 878, 887, 1286
GluI GCNGC 6 cut(s) 301, 642, 733, 813, 1290, 1306
GsuI CTGGAG 1 cut(s) 24
HaeIII GGCC 6 cut(s) 303, 401, 605, 735, 777, 943
HapII CCGG 2 cut(s) 69, 715
HgaI GACGC 1 cut(s) 644
Hin1II CATG 8 cut(s) 22, 31, 163, 233, 463, 640, 685, 940
HincII GTYRAC 2 cut(s) 248, 659
HindII GTYRAC 2 cut(s) 248, 659
HindIII AAGCTT 1 cut(s) 266
HinfI GANTC 4 cut(s) 900, 932, 995, 1028
HpaII CCGG 2 cut(s) 69, 715
HphI GGTGA 2 cut(s) 164, 997
Hpy166II GTNNAC 4 cut(s) 248, 659, 928, 1323
Hpy188I TCNGA 2 cut(s) 745, 769
Hpy8I GTNNAC 4 cut(s) 248, 659, 928, 1323
Hpy99I CGWCG 1 cut(s) 398
HpyAV CCTTC 2 cut(s) 466, 621
HpyCH4III ACNGT 3 cut(s) 444, 1157, 1172
HpyCH4IV ACGT 1 cut(s) 1077
HpyCH4V TGCA 3 cut(s) 272, 322, 512
HpyF10VI GCNNNNNNNGC 1 cut(s) 1352
HpyF3I CTNAG 6 cut(s) 117, 164, 353, 421, 945, 1064
HpySE526I ACGT 1 cut(s) 1077
Hsp92II CATG 8 cut(s) 22, 31, 163, 233, 463, 640, 685, 940
Kpn2I TCCGGA 1 cut(s) 714
Ksp22I TGATCA 1 cut(s) 1039
Kzo9I GATC 7 cut(s) 141, 169, 327, 496, 819, 1039, 1240
LguI GCTCTTC 1 cut(s) 681
LmnI GCTCC 4 cut(s) 43, 48, 98, 802
Lsp1109I GCAGC 3 cut(s) 653, 824, 1301
LweI GCATC 3 cut(s) 60, 1317, 1342
MaeI CTAG 6 cut(s) 113, 533, 728, 878, 887, 1286
MaeII ACGT 1 cut(s) 1077
MaeIII GTNAC 3 cut(s) 1003, 1157, 1235
MalI GATC 7 cut(s) 143, 171, 329, 498, 821, 1041, 1242
MbiI CCGCTC 1 cut(s) 300
MboI GATC 7 cut(s) 141, 169, 327, 496, 819, 1039, 1240
MfeI CAATTG 2 cut(s) 57, 213
MflI RGATCY 2 cut(s) 141, 819
MhlI GDGCHC 1 cut(s) 693
MlsI TGGCCA 1 cut(s) 777
MluI ACGCGT 1 cut(s) 653
MluNI TGGCCA 1 cut(s) 777
MlyI GAGTC 2 cut(s) 926, 989
MmeI TCCRAC 1 cut(s) 604
Mox20I TGGCCA 1 cut(s) 777
MroI TCCGGA 1 cut(s) 714
MscI TGGCCA 1 cut(s) 777
MseI TTAA 8 cut(s) 131, 578, 599, 807, 866, 1056, 1182, 1301
MslI CAYNNNNRTG 2 cut(s) 680, 1047
Msp20I TGGCCA 1 cut(s) 777
MspCI CTTAAG 1 cut(s) 577
MspI CCGG 2 cut(s) 69, 715
MspR9I CCNGG 4 cut(s) 663, 1219, 1258, 1268
MunI CAATTG 2 cut(s) 57, 213
MvaI CCWGG 4 cut(s) 663, 1219, 1258, 1268
MvnI CGCG 2 cut(s) 655, 753
MwoI GCNNNNNNNGC 1 cut(s) 1352
NdeI CATATG 1 cut(s) 1016
NdeII GATC 7 cut(s) 141, 169, 327, 496, 819, 1039, 1240
NheI GCTAGC 1 cut(s) 112
NlaIII CATG 8 cut(s) 22, 31, 163, 233, 463, 640, 685, 940
NlaIV GGNNCC 5 cut(s) 153, 736, 821, 847, 1149
NmuCI GTSAC 3 cut(s) 1003, 1157, 1235
NspI RCATGY 1 cut(s) 163
PagI TCATGA 2 cut(s) 229, 459
PceI AGGCCT 1 cut(s) 943
PciSI GCTCTTC 1 cut(s) 681
PfeI GAWTC 2 cut(s) 900, 1028
PflMI CCANNNNNTGG 1 cut(s) 668
PkrI GCNGC 6 cut(s) 302, 643, 734, 814, 1291, 1307
PleI GAGTC 2 cut(s) 926, 989
PpsI GAGTC 2 cut(s) 926, 989
Ppu21I YACGTR 1 cut(s) 1078
PpuMI RGGWCCY 2 cut(s) 384, 846
Psp5II RGGWCCY 2 cut(s) 384, 846
Psp6I CCWGG 4 cut(s) 661, 1217, 1256, 1266
PspGI CCWGG 4 cut(s) 661, 1217, 1256, 1266
PspN4I GGNNCC 5 cut(s) 153, 736, 821, 847, 1149
PspPI GGNCC 5 cut(s) 218, 384, 400, 734, 846
PspPPI RGGWCCY 2 cut(s) 384, 846
PsuI RGATCY 2 cut(s) 141, 819
RsaI GTAC 4 cut(s) 1080, 1138, 1322, 1367
RsaNI GTAC 4 cut(s) 1079, 1137, 1321, 1366
RseI CAYNNNNRTG 2 cut(s) 680, 1047
SapI GCTCTTC 1 cut(s) 681
SaqAI TTAA 8 cut(s) 131, 578, 599, 807, 866, 1056, 1182, 1301
SatI GCNGC 6 cut(s) 301, 642, 733, 813, 1290, 1306
Sau3AI GATC 7 cut(s) 141, 169, 327, 496, 819, 1039, 1240
Sau96I GGNCC 5 cut(s) 218, 384, 400, 734, 846
ScaI AGTACT 1 cut(s) 1367
SchI GAGTC 2 cut(s) 926, 989
ScrFI CCNGG 4 cut(s) 663, 1219, 1258, 1268
SduI GDGCHC 1 cut(s) 693
SfaNI GCATC 3 cut(s) 60, 1317, 1342
SinI GGWCC 3 cut(s) 218, 384, 846
SmiMI CAYNNNNRTG 2 cut(s) 680, 1047
SmlI CTYRAG 4 cut(s) 577, 704, 826, 850
SmoI CTYRAG 4 cut(s) 577, 704, 826, 850
SseBI AGGCCT 1 cut(s) 943
SsiI CCGC 5 cut(s) 300, 732, 751, 790, 1305
SspMI CTAG 6 cut(s) 113, 533, 728, 878, 887, 1286
StuI AGGCCT 1 cut(s) 943
StyD4I CCNGG 4 cut(s) 661, 1217, 1256, 1266
StyI CCWWGG 3 cut(s) 200, 239, 1276
TaaI ACNGT 3 cut(s) 444, 1157, 1172
TaiI ACGT 1 cut(s) 1080
TaqI TCGA 3 cut(s) 291, 612, 1026
TatI WGTACW 1 cut(s) 1365
TauI GCSGC 3 cut(s) 303, 735, 1308
TfiI GAWTC 2 cut(s) 900, 1028
Tru1I TTAA 8 cut(s) 131, 578, 599, 807, 866, 1056, 1182, 1301
Tru9I TTAA 8 cut(s) 131, 578, 599, 807, 866, 1056, 1182, 1301
TscAI CASTG 2 cut(s) 279, 1162
TseFI GTSAC 3 cut(s) 1003, 1157, 1235
TseI GCWGC 3 cut(s) 641, 812, 1289
Tsp45I GTSAC 3 cut(s) 1003, 1157, 1235
TspDTI ATGAA 9 cut(s) 27, 44, 48, 436, 448, 476, 630, 984, 1119
TspRI CASTG 2 cut(s) 279, 1162
Van91I CCANNNNNTGG 1 cut(s) 668
Vha464I CTTAAG 1 cut(s) 577
VpaK11BI GGWCC 3 cut(s) 218, 384, 846
XapI RAATTY 6 cut(s) 178, 259, 284, 617, 955, 1119
XceI RCATGY 1 cut(s) 163
XcmI CCANNNNNNNNNTGG 1 cut(s) 995
XmiI GTMKAC 1 cut(s) 927
XspI CTAG 6 cut(s) 113, 533, 728, 878, 887, 1286
ZrmI AGTACT 1 cut(s) 1367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.