Rh2AG313200

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001605
Physical Location & Seq
Reverse (-)
40203215 .. 40204980
1766 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG313200.1

Sequence Viewer

Length: 1419 bp
ATGGCACGAAACGAAGACATGGCTTCCATGAATGAAGCTCCAAGTCGGAGCATCACAAGTCTTGAACAGTCATCTAAGGAGAAGTTGTTCAAAAACATAGAGGAAGCAGAAGCGAGGCTATGTCAGTTTCAAAGCACGAAACCAAAGATTCAAAGGGTTCCCGACATGCTTCGAGATCACCCAAATCTCGAGAAATACTATGAGCCAAGGGCAGTGGCACTTGGTCCCTTCCATCATGATAAAGCAAGATGTCAGCTGGCAGAGAAGTTCAAGCTTGCACTGGCAGCAAAGTTTATCCAAGACAGCGGCCGTCAAGTTGAAGATTTGCACAAGATCATTGAGGACAACATCAACACACTAAAGGACTGCTATGATGAGGAAGCAACAAGGTACTACACCAACGAGGCCCTCACACACTTGTTATTCTTAGATGGGTGTTCAACCTTACAGTTCATATACTCATTTATGAATAACGAGTTAGCAAATTTCAAGATCAAGAGGGATCAGGTGGCTTTTGCAGAACAGGACTTGTTCCTGCTAGAAAACCAACTCCCTTACCAAGTCCTCAAGCTGTTGATGAGCTTAAGTGACAAAGAGAAGGAATTGAAGACCGCAATCGATGGATTTGTTGGAAGGAACATCATGGCAGCAGGAAAAAAATGGAAATGGCACAAACACAAGAAAACGAGTCAACCAGCAGATATTGTCGTAAACATGGAAGAGCCCACTCATCTTCTCGAGCTTCTCAGGACAAAAATGCTAGGTCCCAAAGAATCTATCGACCCCAAGAAGAAAAAACCTAAAGATCGCCGACAATCATTCCGCAACATACAGGAGCTTAAAGCAACAGGGATCCATTTAAAGCCTAGTAAGACAAGCACCTTGAGGGACATATCTTTTACTCATCTTCTAGGCTTTGCAGGATTCCTATATCTTCCACCAATATCAGTAGACGACTCCACGAGGCCGAAGTTCTTGAATTTGATAGCCTATGAAATGTGTCCTGATTTCCAAAATGACTTTGGGGTCACCTCTTACATATGCTTCTTGGATTCACTGATTGATCATGCAGATGATGTTAAACAGCTAAGGTCGGCACGCGTACTACACAACTTACTTGGGAGTGATGAAGAGGTGGCTCAACTTTTCAATGAGATAGGCACTGACTTGGTGCCTAACAGTGAAACATACCGCAGTGTCATATCCAAATTAGAAAAGCACTACAAAACTAAGTGGAAAAACTGGATGGCTCAATTCTGTCATGATCATTTCAGTAGCCCCTGGACTATCCTGGCTTTCCTTGGTGTTTTAGCAGCTCTGGGGTTAAGCAGCATCCAGACTTGGTACACAATCAATTCTCCCCCCTCTGCCTGCGATGCTGTATGCGAGTACTTGAAGAAACGGCTAAAAATAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

472

Amino Acids

54.38

Weight (kDa)

7.96

Isoelectric Point (pI)

46.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 50 - 440 2.9e-94 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1025
AccB1I GGYRCC 1 cut(s) 1171
AccI GTMKAC 1 cut(s) 951
AccII CGCG 1 cut(s) 1101
AciI CCGC 4 cut(s) 306, 612, 823, 1192
AclWI GGATC 3 cut(s) 510, 847, 860
AcoI YGGCCR 1 cut(s) 307
AcsI RAATTY 2 cut(s) 484, 979
AfaI GTAC 4 cut(s) 392, 1104, 1346, 1391
AflII CTTAAG 1 cut(s) 583
AflIII ACRYGT 1 cut(s) 1099
AjnI CCWGG 2 cut(s) 1280, 1290
AloI GAACNNNNNNTCC 2 cut(s) 71, 103
AluBI AGCT 9 cut(s) 38, 256, 274, 571, 582, 742, 838, 1087, 1316
AluI AGCT 9 cut(s) 38, 256, 274, 571, 582, 742, 838, 1087, 1316
AlwI GGATC 3 cut(s) 510, 847, 860
Ama87I CYCGRG 2 cut(s) 188, 737
AoxI GGCC 3 cut(s) 307, 405, 965
ApeKI GCWGC 4 cut(s) 284, 647, 1313, 1329
ApoI RAATTY 2 cut(s) 484, 979
Asp700I GAANNNNTTC 1 cut(s) 86
AspS9I GGNCC 3 cut(s) 224, 406, 764
AsuHPI GGTGA 2 cut(s) 170, 1021
AvaI CYCGRG 2 cut(s) 188, 737
AvaII GGWCC 2 cut(s) 224, 764
BamHI GGATCC 1 cut(s) 852
BanI GGYRCC 1 cut(s) 1171
BanII GRGCYC 1 cut(s) 726
BauI CACGAG 1 cut(s) 961
BbsI GAAGAC 2 cut(s) 21, 614
BbvI GCAGC 4 cut(s) 296, 659, 1325, 1341
BccI CCATC 4 cut(s) 240, 425, 614, 1240
BceAI ACGGC 1 cut(s) 294
BciT130I CCWGG 2 cut(s) 1282, 1292
BclI TGATCA 2 cut(s) 1063, 1264
BfaI CTAG 4 cut(s) 539, 761, 867, 911
BfrI CTTAAG 1 cut(s) 583
BisI GCNGC 5 cut(s) 285, 307, 648, 1314, 1330
BlsI GCNGC 5 cut(s) 286, 308, 649, 1315, 1331
BmcAI AGTACT 1 cut(s) 1391
Bme1390I CCNGG 2 cut(s) 1282, 1292
Bme18I GGWCC 2 cut(s) 224, 764
BmeT110I CYCGRG 2 cut(s) 188, 737
BmgT120I GGNCC 3 cut(s) 224, 406, 764
BmiI GGNNCC 5 cut(s) 159, 226, 766, 854, 1173
BmrFI CCNGG 2 cut(s) 1282, 1292
BmsI GCATC 3 cut(s) 60, 1341, 1366
BpiI GAAGAC 2 cut(s) 21, 614
Bpu10I CCTNAGC 1 cut(s) 1088
BpuEI CTTGAG 2 cut(s) 551, 904
Bsa29I ATCGAT 1 cut(s) 618
BsaJI CCNNGG 3 cut(s) 206, 1280, 1300
BsaXI ACNNNNNCTCC 2 cut(s) 71, 101
Bse1I ACTGG 2 cut(s) 285, 1247
BseBI CCWGG 2 cut(s) 1282, 1292
BseCI ATCGAT 1 cut(s) 618
BseDI CCNNGG 3 cut(s) 206, 1280, 1300
BseGI GGATG 2 cut(s) 1251, 1332
BseMII CTCAG 1 cut(s) 760
BseNI ACTGG 2 cut(s) 285, 1247
BseX3I CGGCCG 1 cut(s) 307
BseXI GCAGC 4 cut(s) 296, 659, 1325, 1341
Bsh1236I CGCG 1 cut(s) 1101
Bsh1285I CGRYCG 1 cut(s) 310
BshFI GGCC 3 cut(s) 309, 407, 967
BshNI GGYRCC 1 cut(s) 1171
BshVI ATCGAT 1 cut(s) 618
BsiEI CGRYCG 1 cut(s) 310
BsiHKCI CYCGRG 2 cut(s) 188, 737
BslFI GGGAC 3 cut(s) 210, 750, 902
BsmFI GGGAC 3 cut(s) 210, 750, 902
BsnI GGCC 3 cut(s) 309, 407, 967
BsoBI CYCGRG 2 cut(s) 188, 737
Bsp1286I GDGCHC 1 cut(s) 726
Bsp143I GATC 8 cut(s) 175, 333, 492, 502, 805, 852, 1063, 1264
BspACI CCGC 4 cut(s) 306, 612, 823, 1192
BspANI GGCC 3 cut(s) 309, 407, 967
BspCNI CTCAG 1 cut(s) 759
BspDI ATCGAT 1 cut(s) 618
BspFNI CGCG 1 cut(s) 1101
BspHI TCATGA 2 cut(s) 235, 1261
BspLI GGNNCC 5 cut(s) 159, 226, 766, 854, 1173
BspPI GGATC 3 cut(s) 510, 847, 860
BspQI GCTCTTC 1 cut(s) 714
BspT107I GGYRCC 1 cut(s) 1171
BspTI CTTAAG 1 cut(s) 583
BsrI ACTGG 2 cut(s) 285, 1247
BssECI CCNNGG 3 cut(s) 206, 1280, 1300
BssMI GATC 8 cut(s) 175, 333, 492, 502, 805, 852, 1063, 1264
BssSI CACGAG 1 cut(s) 961
BssT1I CCWWGG 2 cut(s) 206, 1300
Bst2BI CACGAG 1 cut(s) 961
Bst2UI CCWGG 2 cut(s) 1282, 1292
Bst4CI ACNGT 3 cut(s) 69, 450, 1181
Bst6I CTCTTC 2 cut(s) 714, 1125
BstAFI CTTAAG 1 cut(s) 583
BstC8I GCNNGC 4 cut(s) 258, 276, 1099, 1372
BstDEI CTNAG 5 cut(s) 75, 427, 746, 1088, 1230
BstEII GGTNACC 1 cut(s) 1027
BstF5I GGATG 2 cut(s) 1251, 1332
BstFNI CGCG 1 cut(s) 1101
BstKTI GATC 8 cut(s) 178, 336, 495, 505, 808, 855, 1066, 1267
BstMBI GATC 8 cut(s) 175, 333, 492, 502, 805, 852, 1063, 1264
BstMCI CGRYCG 1 cut(s) 310
BstMWI GCNNNNNNNGC 2 cut(s) 284, 1376
BstNI CCWGG 2 cut(s) 1282, 1292
BstNSI RCATGY 1 cut(s) 169
BstPI GGTNACC 1 cut(s) 1027
BstSCI CCNGG 2 cut(s) 1280, 1290
BstUI CGCG 1 cut(s) 1101
BstV1I GCAGC 4 cut(s) 296, 659, 1325, 1341
BstV2I GAAGAC 2 cut(s) 21, 614
BstX2I RGATCY 1 cut(s) 852
BstYI RGATCY 1 cut(s) 852
BstZI CGGCCG 1 cut(s) 307
Bsu15I ATCGAT 1 cut(s) 618
BsuRI GGCC 3 cut(s) 309, 407, 967
BsuTUI ATCGAT 1 cut(s) 618
BtgZI GCGATG 1 cut(s) 1389
BtsCI GGATG 2 cut(s) 1251, 1332
BtsI GCAGTG 2 cut(s) 219, 1201
BtsIMutI CAGTG 6 cut(s) 219, 278, 1055, 1161, 1186, 1201
Cac8I GCNNGC 4 cut(s) 258, 276, 1099, 1372
CciI TCATGA 2 cut(s) 235, 1261
Cfr13I GGNCC 3 cut(s) 224, 406, 764
ClaI ATCGAT 1 cut(s) 618
Csp6I GTAC 4 cut(s) 391, 1103, 1345, 1390
CspCI CAANNNNNGTGG 2 cut(s) 195, 230
CviAII CATG 8 cut(s) 19, 28, 166, 236, 643, 715, 1067, 1262
CviQI GTAC 4 cut(s) 391, 1103, 1345, 1390
DdeI CTNAG 5 cut(s) 75, 427, 746, 1088, 1230
DpnI GATC 8 cut(s) 177, 335, 494, 504, 807, 854, 1065, 1266
DpnII GATC 8 cut(s) 175, 333, 492, 502, 805, 852, 1063, 1264
DraI TTTAAA 1 cut(s) 861
DrdI GACNNNNNNGTC 1 cut(s) 1025
DseDI GACNNNNNNGTC 1 cut(s) 1025
EaeI YGGCCR 1 cut(s) 307
EagI CGGCCG 1 cut(s) 307
Eam1104I CTCTTC 2 cut(s) 714, 1125
EarI CTCTTC 2 cut(s) 714, 1125
EclXI CGGCCG 1 cut(s) 307
Eco130I CCWWGG 2 cut(s) 206, 1300
Eco24I GRGCYC 1 cut(s) 726
Eco47I GGWCC 2 cut(s) 224, 764
Eco52I CGGCCG 1 cut(s) 307
Eco88I CYCGRG 2 cut(s) 188, 737
Eco91I GGTNACC 1 cut(s) 1027
EcoO109I RGGNCCY 2 cut(s) 406, 764
EcoO65I GGTNACC 1 cut(s) 1027
EcoRII CCWGG 2 cut(s) 1280, 1290
EcoT14I CCWWGG 2 cut(s) 206, 1300
EcoT38I GRGCYC 1 cut(s) 726
ErhI CCWWGG 2 cut(s) 206, 1300
FaeI CATG 8 cut(s) 22, 31, 169, 239, 646, 718, 1070, 1265
FaqI GGGAC 3 cut(s) 210, 750, 902
FatI CATG 8 cut(s) 18, 27, 165, 235, 642, 714, 1066, 1261
FauNDI CATATG 1 cut(s) 1040
FbaI TGATCA 2 cut(s) 1063, 1264
FblI GTMKAC 1 cut(s) 951
Fnu4HI GCNGC 5 cut(s) 285, 307, 648, 1314, 1330
FokI GGATG 2 cut(s) 1258, 1319
FriOI GRGCYC 1 cut(s) 726
Fsp4HI GCNGC 5 cut(s) 285, 307, 648, 1314, 1330
FspBI CTAG 4 cut(s) 539, 761, 867, 911
GluI GCNGC 5 cut(s) 285, 307, 648, 1314, 1330
HaeIII GGCC 3 cut(s) 309, 407, 967
Hin1II CATG 8 cut(s) 22, 31, 169, 239, 646, 718, 1070, 1265
HincII GTYRAC 1 cut(s) 692
HindII GTYRAC 1 cut(s) 692
HindIII AAGCTT 1 cut(s) 272
HinfI GANTC 6 cut(s) 148, 688, 773, 924, 956, 1052
HphI GGTGA 2 cut(s) 170, 1021
Hpy166II GTNNAC 4 cut(s) 692, 712, 952, 1347
Hpy188I TCNGA 1 cut(s) 48
Hpy8I GTNNAC 4 cut(s) 692, 712, 952, 1347
HpyAV CCTTC 3 cut(s) 238, 592, 627
HpyCH4III ACNGT 3 cut(s) 69, 450, 1181
HpyCH4V TGCA 5 cut(s) 278, 328, 518, 920, 1070
HpyF10VI GCNNNNNNNGC 2 cut(s) 284, 1376
HpyF3I CTNAG 5 cut(s) 75, 427, 746, 1088, 1230
Hsp92II CATG 8 cut(s) 22, 31, 169, 239, 646, 718, 1070, 1265
Ksp22I TGATCA 2 cut(s) 1063, 1264
Kzo9I GATC 8 cut(s) 175, 333, 492, 502, 805, 852, 1063, 1264
LguI GCTCTTC 1 cut(s) 714
LmnI GCTCC 3 cut(s) 43, 48, 835
Lsp1109I GCAGC 4 cut(s) 296, 659, 1325, 1341
LweI GCATC 3 cut(s) 60, 1341, 1366
MaeI CTAG 4 cut(s) 539, 761, 867, 911
MaeIII GTNAC 2 cut(s) 587, 1027
MalI GATC 8 cut(s) 177, 335, 494, 504, 807, 854, 1065, 1266
MboI GATC 8 cut(s) 175, 333, 492, 502, 805, 852, 1063, 1264
MflI RGATCY 1 cut(s) 852
MhlI GDGCHC 1 cut(s) 726
MluCI AATT 6 cut(s) 484, 602, 979, 1208, 1253, 1354
MluI ACGCGT 1 cut(s) 1099
MlyI GAGTC 2 cut(s) 697, 950
MmeI TCCRAC 2 cut(s) 26, 610
MroXI GAANNNNTTC 1 cut(s) 86
MseI TTAA 5 cut(s) 584, 840, 860, 1080, 1325
MslI CAYNNNNRTG 1 cut(s) 1071
MspA1I CMGCKG 2 cut(s) 256, 306
MspCI CTTAAG 1 cut(s) 583
MspR9I CCNGG 2 cut(s) 1282, 1292
MvaI CCWGG 2 cut(s) 1282, 1292
MvnI CGCG 1 cut(s) 1101
MwoI GCNNNNNNNGC 2 cut(s) 284, 1376
NdeI CATATG 1 cut(s) 1040
NdeII GATC 8 cut(s) 175, 333, 492, 502, 805, 852, 1063, 1264
NlaIII CATG 8 cut(s) 22, 31, 169, 239, 646, 718, 1070, 1265
NlaIV GGNNCC 5 cut(s) 159, 226, 766, 854, 1173
NmuCI GTSAC 2 cut(s) 587, 1027
NspI RCATGY 1 cut(s) 169
PaeR7I CTCGAG 2 cut(s) 188, 737
PagI TCATGA 2 cut(s) 235, 1261
PciSI GCTCTTC 1 cut(s) 714
PdmI GAANNNNTTC 1 cut(s) 86
PfeI GAWTC 4 cut(s) 148, 773, 924, 1052
PkrI GCNGC 5 cut(s) 286, 308, 649, 1315, 1331
PleI GAGTC 2 cut(s) 696, 950
PpsI GAGTC 2 cut(s) 696, 950
PpuMI RGGWCCY 1 cut(s) 764
Psp5II RGGWCCY 1 cut(s) 764
Psp6I CCWGG 2 cut(s) 1280, 1290
PspEI GGTNACC 1 cut(s) 1027
PspGI CCWGG 2 cut(s) 1280, 1290
PspN4I GGNNCC 5 cut(s) 159, 226, 766, 854, 1173
PspPI GGNCC 3 cut(s) 224, 406, 764
PspPPI RGGWCCY 1 cut(s) 764
PsuI RGATCY 1 cut(s) 852
PvuII CAGCTG 1 cut(s) 256
RsaI GTAC 4 cut(s) 392, 1104, 1346, 1391
RsaNI GTAC 4 cut(s) 391, 1103, 1345, 1390
RseI CAYNNNNRTG 1 cut(s) 1071
SapI GCTCTTC 1 cut(s) 714
SaqAI TTAA 5 cut(s) 584, 840, 860, 1080, 1325
SatI GCNGC 5 cut(s) 285, 307, 648, 1314, 1330
Sau3AI GATC 8 cut(s) 175, 333, 492, 502, 805, 852, 1063, 1264
Sau96I GGNCC 3 cut(s) 224, 406, 764
ScaI AGTACT 1 cut(s) 1391
SchI GAGTC 2 cut(s) 697, 950
ScrFI CCNGG 2 cut(s) 1282, 1292
SduI GDGCHC 1 cut(s) 726
SfaNI GCATC 3 cut(s) 60, 1341, 1366
Sfr274I CTCGAG 2 cut(s) 188, 737
SinI GGWCC 2 cut(s) 224, 764
SlaI CTCGAG 2 cut(s) 188, 737
SmiMI CAYNNNNRTG 1 cut(s) 1071
SmlI CTYRAG 5 cut(s) 188, 566, 583, 737, 883
SmoI CTYRAG 5 cut(s) 188, 566, 583, 737, 883
Sse9I AATT 6 cut(s) 484, 602, 979, 1208, 1253, 1354
SsiI CCGC 4 cut(s) 306, 612, 823, 1192
SspMI CTAG 4 cut(s) 539, 761, 867, 911
StyD4I CCNGG 2 cut(s) 1280, 1290
StyI CCWWGG 2 cut(s) 206, 1300
TaaI ACNGT 3 cut(s) 69, 450, 1181
TaqI TCGA 5 cut(s) 172, 189, 618, 738, 780
TasI AATT 6 cut(s) 484, 602, 979, 1208, 1253, 1354
TatI WGTACW 1 cut(s) 1389
TauI GCSGC 1 cut(s) 309
TfiI GAWTC 4 cut(s) 148, 773, 924, 1052
Tru1I TTAA 5 cut(s) 584, 840, 860, 1080, 1325
Tru9I TTAA 5 cut(s) 584, 840, 860, 1080, 1325
TscAI CASTG 6 cut(s) 219, 285, 1062, 1168, 1186, 1201
TseFI GTSAC 2 cut(s) 587, 1027
TseI GCWGC 4 cut(s) 284, 647, 1313, 1329
Tsp45I GTSAC 2 cut(s) 587, 1027
TspDTI ATGAA 6 cut(s) 44, 48, 442, 482, 1008, 1143
TspRI CASTG 6 cut(s) 219, 285, 1062, 1168, 1186, 1201
Vha464I CTTAAG 1 cut(s) 583
VpaK11BI GGWCC 2 cut(s) 224, 764
XapI RAATTY 2 cut(s) 484, 979
XceI RCATGY 1 cut(s) 169
XcmI CCANNNNNNNNNTGG 1 cut(s) 1019
XhoI CTCGAG 2 cut(s) 188, 737
XmiI GTMKAC 1 cut(s) 951
XmnI GAANNNNTTC 1 cut(s) 86
XspI CTAG 4 cut(s) 539, 761, 867, 911
ZrmI AGTACT 1 cut(s) 1391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.