Rh2BG321800

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001605
Physical Location & Seq
Reverse (-)
38700274 .. 38702102
1829 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG321800.1

Sequence Viewer

Length: 1431 bp
ATGGCACGAAATGAAGACACTTCCATGAATGAAGCTCCATTCTGGAGCATCACAATTGATGACAAGTTATCCAGCGAGGAGTTGTTCAAACACATAAAAGGAGCAAAGGAAAGGCTAGCTCAGTTTCAAAGACCAAAACCAAAGATCCAAAGGGTTCCCTACACGCTTAGAGATCACAAAAAATTTGAGAAATACTATGAGCCAAGGGCAGTAGCAATTGGTCCTTTCCATCATGATAAACCAAGGTGTCAACTGGCAGAGAATTTCAAGCTTGCAATGGCAGAAAAATTTATCGAAGACAGCGGCCGTCAGGTTGAATATTTGCACAAGATCATTGAGGACAACATCAACACACTAAAGGACTGCTATGATGAGGAAGCAACAAGGTACTACACCGACGAGGCCCTCACAAACTTGTTATTCTTAGATGGGTGTTCAACCTTACAGTTCATATACTCATTTGTGAATAACCAGTTAGCAAATTTCATGATCAAGAGGGATCAGGTGGCTTTTGCAGAACAGGACTTGTTCCTGCTAGAAAACCAACTCCCTTACCAAGTCCTCAAGCTGTTGATGAGCGCAAGTGCCAAAGAGATGGACTTGAAGTCTGCAATCGATGGATTTGTTGGAAGGAACATCATGGCAGAAGAAAAAAAAGGGAAACGGGACGAACCCAAAAAATGTAGTCAACAAGGATATGGTGTCATAGACAAGGAAGAGCCCACTCATCTTCTCGAGCTTCTCCGGACAAAAATGCTAGGCCCCAAATCTAACAACAGCACGGAGACTCATCTTCTCGAGCTTCTCTGGACAAAAATGCTACGCTGCAAATGTGACAACAGCACGGAGAAAAAAGGCCAACAATCATTCCGCAACATACAGGAGCTTAAAGCAGCAGGGATCCATTTAAGGCGTAGTAAGACAGGGACTTTGAGGGACATATCTTTTACTCATCCTCTAGGGCTTCTAGGCTTTCAAGGATTCCTAAATCTTCCACCACTATCTGTAGATGACTCCATGGGGCCCAAGTTCTTGAATTTGATAGCCTATGAGATGTGTCCTGATTTCCAAAATGACTCTGGGGTCACCTCTTACATATGCTTCCTGGATTCACTAATTGATCATGCAGATGATGTTAAACAGCTAAGGAAGGCACACATACTACACAATTTACTTGGGAGTGATGAAGAGGTGGCTAAACTTTTCAATAAGATAGGTACTGATTTGGTGCCTAACAGTGAAACATACCACGGTGTCAAAGACAAATTAGAAAAGCACTACAAAAACATGTGGAAAACCTGGATGGCTCAATTCTGTCACGATCATTTCAGTAGCCCCTGGACTATCCTGGCTTTCCTTGGTGTTCTAGCAGCTCTAGGGTTAAGCGGCATCCAGACCTGGTACACAGTCAATTCTCCCTCCTCTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

476

Amino Acids

54.67

Weight (kDa)

6.61

Isoelectric Point (pI)

41.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 49 - 459 4.7e-94 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1082
AccB1I GGYRCC 1 cut(s) 1228
AccIII TCCGGA 1 cut(s) 744
AciI CCGC 3 cut(s) 303, 871, 1386
AclWI GGATC 4 cut(s) 139, 507, 895, 908
AcoI YGGCCR 1 cut(s) 304
AcsI RAATTY 5 cut(s) 182, 262, 287, 481, 1036
AfaI GTAC 3 cut(s) 389, 1219, 1403
AflIII ACRYGT 1 cut(s) 1287
AgsI TTSAA 9 cut(s) 88, 128, 268, 317, 438, 604, 977, 1036, 1207
AhdI GACNNNNNGTC 1 cut(s) 604
AjnI CCWGG 5 cut(s) 1104, 1298, 1337, 1347, 1397
AluBI AGCT 9 cut(s) 35, 119, 271, 568, 739, 802, 886, 1144, 1373
AluI AGCT 9 cut(s) 35, 119, 271, 568, 739, 802, 886, 1144, 1373
Alw26I GTCTC 1 cut(s) 779
AlwI GGATC 4 cut(s) 139, 507, 895, 908
Ama87I CYCGRG 2 cut(s) 734, 797
Aor13HI TCCGGA 1 cut(s) 744
AoxI GGCC 5 cut(s) 304, 402, 760, 856, 1022
ApaI GGGCCC 1 cut(s) 1026
ApeKI GCWGC 3 cut(s) 825, 893, 1370
ApoI RAATTY 5 cut(s) 182, 262, 287, 481, 1036
ArsI GACNNNNNNTTYG 2 cut(s) 913, 945
AspLEI GCGC 1 cut(s) 581
AspS9I GGNCC 5 cut(s) 221, 403, 761, 1022, 1023
AsuHPI GGTGA 1 cut(s) 1078
AsuNHI GCTAGC 1 cut(s) 115
AvaI CYCGRG 2 cut(s) 734, 797
AvaII GGWCC 1 cut(s) 221
BaeGI GKGCMC 1 cut(s) 1026
BamHI GGATCC 1 cut(s) 900
BanI GGYRCC 1 cut(s) 1228
BanII GRGCYC 2 cut(s) 723, 1026
BbsI GAAGAC 2 cut(s) 21, 303
BbvI GCAGC 3 cut(s) 812, 905, 1382
BccI CCATC 5 cut(s) 237, 422, 589, 611, 1297
BceAI ACGGC 1 cut(s) 291
BciT130I CCWGG 5 cut(s) 1106, 1300, 1339, 1349, 1399
BclI TGATCA 2 cut(s) 489, 1120
BcoDI GTCTC 1 cut(s) 779
BfaI CTAG 7 cut(s) 116, 536, 758, 959, 968, 1367, 1376
BfmI CTRYAG 1 cut(s) 1005
BisI GCNGC 5 cut(s) 304, 826, 894, 1371, 1387
BlsI GCNGC 5 cut(s) 305, 827, 895, 1372, 1388
Bme1390I CCNGG 5 cut(s) 1106, 1300, 1339, 1349, 1399
Bme18I GGWCC 1 cut(s) 221
BmeRI GACNNNNNGTC 1 cut(s) 604
BmeT110I CYCGRG 2 cut(s) 734, 797
BmgT120I GGNCC 5 cut(s) 221, 403, 761, 1022, 1023
BmiI GGNNCC 6 cut(s) 156, 763, 902, 1023, 1024, 1230
BmrFI CCNGG 5 cut(s) 1106, 1300, 1339, 1349, 1399
BmsI GCATC 2 cut(s) 57, 1398
BmtI GCTAGC 1 cut(s) 119
BpiI GAAGAC 2 cut(s) 21, 303
BpmI CTGGAG 1 cut(s) 64
Bpu10I CCTNAGC 1 cut(s) 1145
BpuEI CTTGAG 1 cut(s) 548
Bsa29I ATCGAT 1 cut(s) 615
BsaJI CCNNGG 6 cut(s) 203, 242, 1017, 1249, 1337, 1357
BsaWI WCCGGW 1 cut(s) 744
Bse1I ACTGG 2 cut(s) 258, 472
Bse3DI GCAATG 1 cut(s) 282
BseAI TCCGGA 1 cut(s) 744
BseBI CCWGG 5 cut(s) 1106, 1300, 1339, 1349, 1399
BseCI ATCGAT 1 cut(s) 615
BseDI CCNNGG 6 cut(s) 203, 242, 1017, 1249, 1337, 1357
BseGI GGATG 3 cut(s) 952, 1308, 1389
BseMI GCAATG 1 cut(s) 282
BseMII CTCAG 1 cut(s) 134
BseNI ACTGG 2 cut(s) 258, 472
BseRI GAGGAG 2 cut(s) 92, 1411
BseSI GKGCMC 1 cut(s) 1026
BseX3I CGGCCG 1 cut(s) 304
BseXI GCAGC 3 cut(s) 812, 905, 1382
Bsh1285I CGRYCG 1 cut(s) 307
BshFI GGCC 5 cut(s) 306, 404, 762, 858, 1024
BshNI GGYRCC 1 cut(s) 1228
BshVI ATCGAT 1 cut(s) 615
BsiEI CGRYCG 1 cut(s) 307
BsiHKCI CYCGRG 2 cut(s) 734, 797
BsiSI CCGG 1 cut(s) 745
BslFI GGGAC 3 cut(s) 680, 940, 950
BsmAI GTCTC 1 cut(s) 779
BsmFI GGGAC 3 cut(s) 680, 940, 950
BsnI GGCC 5 cut(s) 306, 404, 762, 858, 1024
BsoBI CYCGRG 2 cut(s) 734, 797
Bsp120I GGGCCC 1 cut(s) 1022
Bsp1286I GDGCHC 2 cut(s) 723, 1026
Bsp13I TCCGGA 1 cut(s) 744
Bsp143I GATC 8 cut(s) 144, 172, 330, 489, 499, 900, 1120, 1321
Bsp19I CCATGG 1 cut(s) 1017
BspACI CCGC 3 cut(s) 303, 871, 1386
BspANI GGCC 5 cut(s) 306, 404, 762, 858, 1024
BspCNI CTCAG 1 cut(s) 133
BspDI ATCGAT 1 cut(s) 615
BspEI TCCGGA 1 cut(s) 744
BspHI TCATGA 2 cut(s) 232, 486
BspLI GGNNCC 6 cut(s) 156, 763, 902, 1023, 1024, 1230
BspOI GCTAGC 1 cut(s) 119
BspPI GGATC 4 cut(s) 139, 507, 895, 908
BspQI GCTCTTC 1 cut(s) 711
BspT107I GGYRCC 1 cut(s) 1228
BsrDI GCAATG 1 cut(s) 282
BsrI ACTGG 2 cut(s) 258, 472
BssECI CCNNGG 6 cut(s) 203, 242, 1017, 1249, 1337, 1357
BssMI GATC 8 cut(s) 144, 172, 330, 489, 499, 900, 1120, 1321
BssT1I CCWWGG 4 cut(s) 203, 242, 1017, 1357
Bst2UI CCWGG 5 cut(s) 1106, 1300, 1339, 1349, 1399
Bst4CI ACNGT 4 cut(s) 447, 1238, 1253, 1408
Bst6I CTCTTC 2 cut(s) 711, 1182
BstC8I GCNNGC 2 cut(s) 117, 273
BstDEI CTNAG 4 cut(s) 120, 167, 424, 1145
BstDSI CCRYGG 2 cut(s) 1017, 1249
BstEII GGTNACC 1 cut(s) 1084
BstF5I GGATG 3 cut(s) 952, 1308, 1389
BstHHI GCGC 1 cut(s) 581
BstKTI GATC 8 cut(s) 147, 175, 333, 492, 502, 903, 1123, 1324
BstMAI GTCTC 1 cut(s) 779
BstMBI GATC 8 cut(s) 144, 172, 330, 489, 499, 900, 1120, 1321
BstMCI CGRYCG 1 cut(s) 307
BstNI CCWGG 5 cut(s) 1106, 1300, 1339, 1349, 1399
BstNSI RCATGY 1 cut(s) 1291
BstPI GGTNACC 1 cut(s) 1084
BstSCI CCNGG 5 cut(s) 1104, 1298, 1337, 1347, 1397
BstSFI CTRYAG 1 cut(s) 1005
BstSLI GKGCMC 1 cut(s) 1026
BstV1I GCAGC 3 cut(s) 812, 905, 1382
BstV2I GAAGAC 2 cut(s) 21, 303
BstX2I RGATCY 2 cut(s) 144, 900
BstXI CCANNNNNNTGG 1 cut(s) 595
BstYI RGATCY 2 cut(s) 144, 900
BstZI CGGCCG 1 cut(s) 304
Bsu15I ATCGAT 1 cut(s) 615
BsuRI GGCC 5 cut(s) 306, 404, 762, 858, 1024
BsuTUI ATCGAT 1 cut(s) 615
BtgI CCRYGG 2 cut(s) 1017, 1249
BtsCI GGATG 3 cut(s) 952, 1308, 1389
BtsIMutI CAGTG 1 cut(s) 1243
Cac8I GCNNGC 2 cut(s) 117, 273
CciI TCATGA 2 cut(s) 232, 486
CfoI GCGC 1 cut(s) 581
Cfr13I GGNCC 5 cut(s) 221, 403, 761, 1022, 1023
ClaI ATCGAT 1 cut(s) 615
CsiI ACCWGGT 1 cut(s) 1397
Csp6I GTAC 3 cut(s) 388, 1218, 1402
CviAII CATG 7 cut(s) 25, 233, 487, 640, 1018, 1124, 1288
CviQI GTAC 3 cut(s) 388, 1218, 1402
DdeI CTNAG 4 cut(s) 120, 167, 424, 1145
DpnI GATC 8 cut(s) 146, 174, 332, 491, 501, 902, 1122, 1323
DpnII GATC 8 cut(s) 144, 172, 330, 489, 499, 900, 1120, 1321
DrdI GACNNNNNNGTC 1 cut(s) 1082
DriI GACNNNNNGTC 1 cut(s) 604
DseDI GACNNNNNNGTC 1 cut(s) 1082
EaeI YGGCCR 1 cut(s) 304
EagI CGGCCG 1 cut(s) 304
Eam1104I CTCTTC 2 cut(s) 711, 1182
Eam1105I GACNNNNNGTC 1 cut(s) 604
EarI CTCTTC 2 cut(s) 711, 1182
EclXI CGGCCG 1 cut(s) 304
Eco130I CCWWGG 4 cut(s) 203, 242, 1017, 1357
Eco24I GRGCYC 2 cut(s) 723, 1026
Eco47I GGWCC 1 cut(s) 221
Eco52I CGGCCG 1 cut(s) 304
Eco88I CYCGRG 2 cut(s) 734, 797
Eco91I GGTNACC 1 cut(s) 1084
EcoO109I RGGNCCY 3 cut(s) 403, 761, 1022
EcoO65I GGTNACC 1 cut(s) 1084
EcoRII CCWGG 5 cut(s) 1104, 1298, 1337, 1347, 1397
EcoT14I CCWWGG 4 cut(s) 203, 242, 1017, 1357
EcoT38I GRGCYC 2 cut(s) 723, 1026
ErhI CCWWGG 4 cut(s) 203, 242, 1017, 1357
FaeI CATG 7 cut(s) 28, 236, 490, 643, 1021, 1127, 1291
FaqI GGGAC 3 cut(s) 680, 940, 950
FatI CATG 7 cut(s) 24, 232, 486, 639, 1017, 1123, 1287
FauNDI CATATG 1 cut(s) 1097
FbaI TGATCA 2 cut(s) 489, 1120
Fnu4HI GCNGC 5 cut(s) 304, 826, 894, 1371, 1387
FokI GGATG 3 cut(s) 939, 1315, 1376
FriOI GRGCYC 2 cut(s) 723, 1026
Fsp4HI GCNGC 5 cut(s) 304, 826, 894, 1371, 1387
FspBI CTAG 7 cut(s) 116, 536, 758, 959, 968, 1367, 1376
GlaI GCGC 1 cut(s) 580
GluI GCNGC 5 cut(s) 304, 826, 894, 1371, 1387
GsuI CTGGAG 1 cut(s) 64
HaeIII GGCC 5 cut(s) 306, 404, 762, 858, 1024
HapII CCGG 1 cut(s) 745
HhaI GCGC 1 cut(s) 581
Hin1II CATG 7 cut(s) 28, 236, 490, 643, 1021, 1127, 1291
Hin6I GCGC 1 cut(s) 579
HinP1I GCGC 1 cut(s) 579
HincII GTYRAC 2 cut(s) 251, 689
HindII GTYRAC 2 cut(s) 251, 689
HindIII AAGCTT 1 cut(s) 269
HinfI GANTC 5 cut(s) 787, 981, 1013, 1076, 1109
HpaII CCGG 1 cut(s) 745
HphI GGTGA 1 cut(s) 1078
Hpy166II GTNNAC 3 cut(s) 251, 689, 1404
Hpy8I GTNNAC 3 cut(s) 251, 689, 1404
Hpy99I CGWCG 1 cut(s) 401
HpyAV CCTTC 2 cut(s) 624, 1144
HpyCH4III ACNGT 4 cut(s) 447, 1238, 1253, 1408
HpyCH4V TGCA 6 cut(s) 275, 325, 515, 611, 828, 1127
HpyF3I CTNAG 4 cut(s) 120, 167, 424, 1145
Hsp92II CATG 7 cut(s) 28, 236, 490, 643, 1021, 1127, 1291
HspAI GCGC 1 cut(s) 579
Kpn2I TCCGGA 1 cut(s) 744
Ksp22I TGATCA 2 cut(s) 489, 1120
Kzo9I GATC 8 cut(s) 144, 172, 330, 489, 499, 900, 1120, 1321
LguI GCTCTTC 1 cut(s) 711
LmnI GCTCC 4 cut(s) 40, 45, 101, 883
Lsp1109I GCAGC 3 cut(s) 812, 905, 1382
LweI GCATC 2 cut(s) 57, 1398
MabI ACCWGGT 1 cut(s) 1397
MaeI CTAG 7 cut(s) 116, 536, 758, 959, 968, 1367, 1376
MaeIII GTNAC 3 cut(s) 833, 1084, 1316
MalI GATC 8 cut(s) 146, 174, 332, 491, 501, 902, 1122, 1323
MboI GATC 8 cut(s) 144, 172, 330, 489, 499, 900, 1120, 1321
MboII GAAGA 9 cut(s) 26, 308, 659, 722, 728, 785, 983, 1199, 1416
MfeI CAATTG 2 cut(s) 54, 216
MflI RGATCY 2 cut(s) 144, 900
MhlI GDGCHC 2 cut(s) 723, 1026
MlyI GAGTC 3 cut(s) 781, 1007, 1070
MmeI TCCRAC 1 cut(s) 607
MroI TCCGGA 1 cut(s) 744
MseI TTAA 4 cut(s) 888, 908, 1137, 1382
MslI CAYNNNNRTG 2 cut(s) 23, 1128
MspA1I CMGCKG 1 cut(s) 303
MspI CCGG 1 cut(s) 745
MspR9I CCNGG 5 cut(s) 1106, 1300, 1339, 1349, 1399
MunI CAATTG 2 cut(s) 54, 216
MvaI CCWGG 5 cut(s) 1106, 1300, 1339, 1349, 1399
NcoI CCATGG 1 cut(s) 1017
NdeI CATATG 1 cut(s) 1097
NdeII GATC 8 cut(s) 144, 172, 330, 489, 499, 900, 1120, 1321
NheI GCTAGC 1 cut(s) 115
NlaIII CATG 7 cut(s) 28, 236, 490, 643, 1021, 1127, 1291
NlaIV GGNNCC 6 cut(s) 156, 763, 902, 1023, 1024, 1230
NmuCI GTSAC 3 cut(s) 833, 1084, 1316
NspI RCATGY 1 cut(s) 1291
PaeR7I CTCGAG 2 cut(s) 734, 797
PagI TCATGA 2 cut(s) 232, 486
PciI ACATGT 1 cut(s) 1287
PciSI GCTCTTC 1 cut(s) 711
PfeI GAWTC 2 cut(s) 981, 1109
PfoI TCCNGGA 1 cut(s) 1104
PkrI GCNGC 5 cut(s) 305, 827, 895, 1372, 1388
PleI GAGTC 3 cut(s) 781, 1007, 1070
PpsI GAGTC 3 cut(s) 781, 1007, 1070
PscI ACATGT 1 cut(s) 1287
Psp6I CCWGG 5 cut(s) 1104, 1298, 1337, 1347, 1397
PspEI GGTNACC 1 cut(s) 1084
PspGI CCWGG 5 cut(s) 1104, 1298, 1337, 1347, 1397
PspN4I GGNNCC 6 cut(s) 156, 763, 902, 1023, 1024, 1230
PspOMI GGGCCC 1 cut(s) 1022
PspPI GGNCC 5 cut(s) 221, 403, 761, 1022, 1023
PsuI RGATCY 2 cut(s) 144, 900
RsaI GTAC 3 cut(s) 389, 1219, 1403
RsaNI GTAC 3 cut(s) 388, 1218, 1402
RseI CAYNNNNRTG 2 cut(s) 23, 1128
SapI GCTCTTC 1 cut(s) 711
SaqAI TTAA 4 cut(s) 888, 908, 1137, 1382
SatI GCNGC 5 cut(s) 304, 826, 894, 1371, 1387
Sau3AI GATC 8 cut(s) 144, 172, 330, 489, 499, 900, 1120, 1321
Sau96I GGNCC 5 cut(s) 221, 403, 761, 1022, 1023
SchI GAGTC 3 cut(s) 781, 1007, 1070
ScrFI CCNGG 5 cut(s) 1106, 1300, 1339, 1349, 1399
SduI GDGCHC 2 cut(s) 723, 1026
SexAI ACCWGGT 1 cut(s) 1397
SfaNI GCATC 2 cut(s) 57, 1398
SfcI CTRYAG 1 cut(s) 1005
Sfr274I CTCGAG 2 cut(s) 734, 797
SinI GGWCC 1 cut(s) 221
SlaI CTCGAG 2 cut(s) 734, 797
SmiMI CAYNNNNRTG 2 cut(s) 23, 1128
SmlI CTYRAG 3 cut(s) 563, 734, 797
SmoI CTYRAG 3 cut(s) 563, 734, 797
SsiI CCGC 3 cut(s) 303, 871, 1386
SspI AATATT 1 cut(s) 320
SspMI CTAG 7 cut(s) 116, 536, 758, 959, 968, 1367, 1376
StyD4I CCNGG 5 cut(s) 1104, 1298, 1337, 1347, 1397
StyI CCWWGG 4 cut(s) 203, 242, 1017, 1357
TaaI ACNGT 4 cut(s) 447, 1238, 1253, 1408
TaqI TCGA 4 cut(s) 294, 615, 735, 798
TauI GCSGC 2 cut(s) 306, 1389
TfiI GAWTC 2 cut(s) 981, 1109
Tru1I TTAA 4 cut(s) 888, 908, 1137, 1382
Tru9I TTAA 4 cut(s) 888, 908, 1137, 1382
TscAI CASTG 1 cut(s) 1243
TseFI GTSAC 3 cut(s) 833, 1084, 1316
TseI GCWGC 3 cut(s) 825, 893, 1370
Tsp45I GTSAC 3 cut(s) 833, 1084, 1316
TspDTI ATGAA 6 cut(s) 27, 41, 45, 439, 475, 1200
TspGWI ACGGA 2 cut(s) 797, 860
TspRI CASTG 1 cut(s) 1243
VpaK11BI GGWCC 1 cut(s) 221
XapI RAATTY 5 cut(s) 182, 262, 287, 481, 1036
XceI RCATGY 1 cut(s) 1291
XcmI CCANNNNNNNNNTGG 1 cut(s) 1076
XhoI CTCGAG 2 cut(s) 734, 797
XspI CTAG 7 cut(s) 116, 536, 758, 959, 968, 1367, 1376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.