Rmu_sc0010311.1_g000001

UPF0481 protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010311.1
Physical Location & Seq
Reverse (-)
3164 .. 4573
1410 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010311.1_g000001.1.cds

Sequence Viewer

Length: 1410 bp
atggcacgaaacgaagacatggcttccatgaatgaagctccaagtcggagcatcacaatccttgaacagttctctaaggaggagttgttcaaaaacataaaggaagcagaagaaaggctagctcagcctcagtctcaaagctcaaaaccaaagatccaaagggttcccgacatgctccgagatcacccaaatttcgagaaatactatgagccaagggcagtagcacttggtcctttccatcataataaagcaaggtgtcagctggcagagaagttcaagtttgcactggcagcaaaatttatcaaagaaagtggcagtcgagctgaagatttgcacaagatcattgaggacaacatcaacgaactaaaggactgctacgatgaggaagcaacaagatcctacaccgacgaggccctcacacaattgttattcttagatgggtgttcaaccttacagttcatatactcgtttacgaataataagttagaagatttcaagatcaagagggatcaggtggctttcgcagaacaggatttgttcttgctagaaaaccaactcccttaccaagtcctcaagctgttgatgagcaaaagtgacaaagcggaagagttgaagatcgcaattgatgattttgttctaaagaacatcgacaaaatatcaaaaaggcacaaagacaaaagaacacgtcgagcaggaggtacagtcataaacgtggaagagcccactcatcttctcgagcttctccggacagaaatgctaggtccccaaaaatttgacgccgaggagaaaaaacataaacatcgccgacaatcgttccgcaacatacaggagcttaaagcagctgggatccacttaaagcctagtaagaaaagcaccttgagggacatatattttacttctctaggctttgtaggattcctatatcttccaccaatatcagtagacgactccatggggcctaagttcttgaatatgatagcctatgagatgtgtccagatttccaaaatgactttggggtcacctcttacatatgcttcctggattcactgatagatcatgcagatgacgttaaacagctaaggtcggcaggcgtactacacaacttacttgggagtgatggagaggtggctcaacttttcaatgagataggtactgacttggtgcctaatagtgaaacatacctcagtgtcaaatccaaattagaaaatcactacaaaaccaagtggaaaacctggatggctcaattctgtcacgaacatttcagtagtccctggactatcctggctttccttggtgttctagcagctctggggttaagcggcattcagacttggtacacaatcaattctccgccctctgcctgcgatgctgtatgcgagtacttgaagaaacagctaaaaatagattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

469

Amino Acids

53.88

Weight (kDa)

6.3

Isoelectric Point (pI)

48.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1016
AccB1I GGYRCC 1 cut(s) 1162
AccI GTMKAC 1 cut(s) 942
AccIII TCCGGA 1 cut(s) 744
AciI CCGC 4 cut(s) 602, 817, 1320, 1352
AclWI GGATC 5 cut(s) 148, 390, 516, 841, 854
AcsI RAATTY 3 cut(s) 190, 296, 770
AcuI CTGAAG 1 cut(s) 345
AcyI GRCGYC 1 cut(s) 777
AfaI GTAC 5 cut(s) 700, 1095, 1153, 1337, 1382
AflIII ACRYGT 1 cut(s) 683
AgsI TTSAA 9 cut(s) 65, 91, 277, 447, 496, 613, 970, 1141, 1387
AjiI CACGTC 1 cut(s) 686
AjnI CCWGG 4 cut(s) 1038, 1232, 1271, 1281
AloI GAACNNNNNNTCC 2 cut(s) 71, 103
Alw26I GTCTC 1 cut(s) 138
AlwI GGATC 5 cut(s) 148, 390, 516, 841, 854
Ama87I CYCGRG 1 cut(s) 734
Aor13HI TCCGGA 1 cut(s) 744
AoxI GGCC 2 cut(s) 411, 956
ApeKI GCWGC 3 cut(s) 290, 839, 1304
ApoI RAATTY 3 cut(s) 190, 296, 770
AspS9I GGNCC 4 cut(s) 230, 412, 761, 956
AsuHPI GGTGA 2 cut(s) 176, 1012
AsuNHI GCTAGC 1 cut(s) 118
AvaI CYCGRG 1 cut(s) 734
AvaII GGWCC 2 cut(s) 230, 761
BamHI GGATCC 1 cut(s) 846
BanI GGYRCC 1 cut(s) 1162
BanII GRGCYC 1 cut(s) 723
BbsI GAAGAC 1 cut(s) 21
BbvI GCAGC 3 cut(s) 302, 851, 1316
BccI CCATC 4 cut(s) 246, 431, 1112, 1231
BciT130I CCWGG 4 cut(s) 1040, 1234, 1273, 1283
BcoDI GTCTC 1 cut(s) 138
BfaI CTAG 6 cut(s) 119, 545, 758, 861, 902, 1301
BisI GCNGC 4 cut(s) 291, 840, 1305, 1321
BlpI GCTNAGC 1 cut(s) 123
BlsI GCNGC 4 cut(s) 292, 841, 1306, 1322
BmcAI AGTACT 1 cut(s) 1382
Bme1390I CCNGG 4 cut(s) 1040, 1234, 1273, 1283
Bme18I GGWCC 2 cut(s) 230, 761
BmeT110I CYCGRG 1 cut(s) 734
BmgBI CACGTC 1 cut(s) 686
BmgT120I GGNCC 4 cut(s) 230, 412, 761, 956
BmiI GGNNCC 5 cut(s) 165, 763, 848, 957, 1164
BmrFI CCNGG 4 cut(s) 1040, 1234, 1273, 1283
BmsI GCATC 2 cut(s) 60, 1357
BmtI GCTAGC 1 cut(s) 122
BpiI GAAGAC 1 cut(s) 21
Bpu10I CCTNAGC 1 cut(s) 1079
Bpu1102I GCTNAGC 1 cut(s) 123
BpuEI CTTGAG 2 cut(s) 557, 898
BsaHI GRCGYC 1 cut(s) 777
BsaJI CCNNGG 5 cut(s) 212, 780, 951, 1271, 1291
BsaWI WCCGGW 1 cut(s) 744
BsaXI ACNNNNNCTCC 4 cut(s) 71, 101, 687, 717
Bse1I ACTGG 1 cut(s) 291
BseAI TCCGGA 1 cut(s) 744
BseBI CCWGG 4 cut(s) 1040, 1234, 1273, 1283
BseDI CCNNGG 5 cut(s) 212, 780, 951, 1271, 1291
BseGI GGATG 1 cut(s) 1242
BseMII CTCAG 3 cut(s) 137, 143, 1198
BseNI ACTGG 1 cut(s) 291
BseRI GAGGAG 2 cut(s) 95, 797
BseXI GCAGC 3 cut(s) 302, 851, 1316
BseYI CCCAGC 1 cut(s) 842
BshFI GGCC 2 cut(s) 413, 958
BshNI GGYRCC 1 cut(s) 1162
BsiHKCI CYCGRG 1 cut(s) 734
BsiSI CCGG 1 cut(s) 745
BslFI GGGAC 3 cut(s) 747, 896, 1254
BsmAI GTCTC 1 cut(s) 138
BsmFI GGGAC 3 cut(s) 747, 896, 1254
BsmI GAATGC 1 cut(s) 1323
BsnI GGCC 2 cut(s) 413, 958
BsoBI CYCGRG 1 cut(s) 734
Bsp1286I GDGCHC 1 cut(s) 723
Bsp13I TCCGGA 1 cut(s) 744
Bsp143I GATC 9 cut(s) 153, 181, 339, 395, 498, 508, 615, 846, 1054
Bsp1720I GCTNAGC 1 cut(s) 123
Bsp19I CCATGG 1 cut(s) 951
BspACI CCGC 4 cut(s) 602, 817, 1320, 1352
BspANI GGCC 2 cut(s) 413, 958
BspCNI CTCAG 3 cut(s) 136, 142, 1197
BspEI TCCGGA 1 cut(s) 744
BspLI GGNNCC 5 cut(s) 165, 763, 848, 957, 1164
BspOI GCTAGC 1 cut(s) 122
BspPI GGATC 5 cut(s) 148, 390, 516, 841, 854
BspQI GCTCTTC 1 cut(s) 711
BspT107I GGYRCC 1 cut(s) 1162
BsrI ACTGG 1 cut(s) 291
BssECI CCNNGG 5 cut(s) 212, 780, 951, 1271, 1291
BssMI GATC 9 cut(s) 153, 181, 339, 395, 498, 508, 615, 846, 1054
BssNI GRCGYC 1 cut(s) 777
BssT1I CCWWGG 3 cut(s) 212, 951, 1291
Bst2UI CCWGG 4 cut(s) 1040, 1234, 1273, 1283
Bst4CI ACNGT 3 cut(s) 69, 456, 703
Bst6I CTCTTC 2 cut(s) 600, 711
BstACI GRCGYC 1 cut(s) 777
BstC8I GCNNGC 4 cut(s) 120, 264, 1090, 1363
BstDEI CTNAG 7 cut(s) 75, 123, 129, 433, 960, 1079, 1184
BstDSI CCRYGG 1 cut(s) 951
BstEII GGTNACC 1 cut(s) 1018
BstF5I GGATG 1 cut(s) 1242
BstKTI GATC 9 cut(s) 156, 184, 342, 398, 501, 511, 618, 849, 1057
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 9 cut(s) 153, 181, 339, 395, 498, 508, 615, 846, 1054
BstMWI GCNNNNNNNGC 3 cut(s) 124, 290, 1367
BstNI CCWGG 4 cut(s) 1040, 1234, 1273, 1283
BstNSI RCATGY 1 cut(s) 175
BstPI GGTNACC 1 cut(s) 1018
BstSCI CCNGG 4 cut(s) 1038, 1232, 1271, 1281
BstV1I GCAGC 3 cut(s) 302, 851, 1316
BstV2I GAAGAC 1 cut(s) 21
BstX2I RGATCY 3 cut(s) 153, 395, 846
BstYI RGATCY 3 cut(s) 153, 395, 846
BsuRI GGCC 2 cut(s) 413, 958
BtgI CCRYGG 1 cut(s) 951
BtgZI GCGATG 2 cut(s) 785, 1380
BtrI CACGTC 1 cut(s) 686
BtsCI GGATG 1 cut(s) 1242
BtsIMutI CAGTG 3 cut(s) 284, 1046, 1192
Cac8I GCNNGC 4 cut(s) 120, 264, 1090, 1363
Cfr13I GGNCC 4 cut(s) 230, 412, 761, 956
CseI GACGC 1 cut(s) 785
Csp6I GTAC 5 cut(s) 699, 1094, 1152, 1336, 1381
CspCI CAANNNNNGTGG 2 cut(s) 292, 327
CviAII CATG 5 cut(s) 19, 28, 172, 952, 1058
CviQI GTAC 5 cut(s) 699, 1094, 1152, 1336, 1381
DdeI CTNAG 7 cut(s) 75, 123, 129, 433, 960, 1079, 1184
DpnI GATC 9 cut(s) 155, 183, 341, 397, 500, 510, 617, 848, 1056
DpnII GATC 9 cut(s) 153, 181, 339, 395, 498, 508, 615, 846, 1054
DrdI GACNNNNNNGTC 1 cut(s) 1016
DseDI GACNNNNNNGTC 1 cut(s) 1016
Eam1104I CTCTTC 2 cut(s) 600, 711
EarI CTCTTC 2 cut(s) 600, 711
EciI GGCGGA 1 cut(s) 1341
Eco130I CCWWGG 3 cut(s) 212, 951, 1291
Eco24I GRGCYC 1 cut(s) 723
Eco47I GGWCC 2 cut(s) 230, 761
Eco57I CTGAAG 1 cut(s) 345
Eco88I CYCGRG 1 cut(s) 734
Eco91I GGTNACC 1 cut(s) 1018
EcoO109I RGGNCCY 3 cut(s) 412, 761, 956
EcoO65I GGTNACC 1 cut(s) 1018
EcoRII CCWGG 4 cut(s) 1038, 1232, 1271, 1281
EcoT14I CCWWGG 3 cut(s) 212, 951, 1291
EcoT38I GRGCYC 1 cut(s) 723
ErhI CCWWGG 3 cut(s) 212, 951, 1291
FaeI CATG 5 cut(s) 22, 31, 175, 955, 1061
FaqI GGGAC 3 cut(s) 747, 896, 1254
FatI CATG 5 cut(s) 18, 27, 171, 951, 1057
FauNDI CATATG 1 cut(s) 1031
FblI GTMKAC 1 cut(s) 942
Fnu4HI GCNGC 4 cut(s) 291, 840, 1305, 1321
FokI GGATG 1 cut(s) 1249
FriOI GRGCYC 1 cut(s) 723
Fsp4HI GCNGC 4 cut(s) 291, 840, 1305, 1321
FspBI CTAG 6 cut(s) 119, 545, 758, 861, 902, 1301
GluI GCNGC 4 cut(s) 291, 840, 1305, 1321
GsaI CCCAGC 1 cut(s) 846
HaeIII GGCC 2 cut(s) 413, 958
HapII CCGG 1 cut(s) 745
HgaI GACGC 1 cut(s) 785
Hin1I GRCGYC 1 cut(s) 777
Hin1II CATG 5 cut(s) 22, 31, 175, 955, 1061
HinfI GANTC 3 cut(s) 915, 947, 1043
HpaII CCGG 1 cut(s) 745
HphI GGTGA 2 cut(s) 176, 1012
Hpy166II GTNNAC 3 cut(s) 471, 943, 1338
Hpy188I TCNGA 3 cut(s) 48, 179, 1329
Hpy188III TCNNGA 9 cut(s) 167, 196, 496, 502, 734, 745, 967, 995, 1253
Hpy8I GTNNAC 3 cut(s) 471, 943, 1338
Hpy99I CGWCG 2 cut(s) 410, 690
HpyCH4III ACNGT 3 cut(s) 69, 456, 703
HpyCH4IV ACGT 3 cut(s) 685, 711, 1068
HpyCH4V TGCA 3 cut(s) 284, 334, 1061
HpyF10VI GCNNNNNNNGC 3 cut(s) 124, 290, 1367
HpyF3I CTNAG 7 cut(s) 75, 123, 129, 433, 960, 1079, 1184
HpySE526I ACGT 3 cut(s) 685, 711, 1068
Hsp92I GRCGYC 1 cut(s) 777
Hsp92II CATG 5 cut(s) 22, 31, 175, 955, 1061
Kpn2I TCCGGA 1 cut(s) 744
Kzo9I GATC 9 cut(s) 153, 181, 339, 395, 498, 508, 615, 846, 1054
LguI GCTCTTC 1 cut(s) 711
LmnI GCTCC 4 cut(s) 43, 48, 180, 829
Lsp1109I GCAGC 3 cut(s) 302, 851, 1316
LweI GCATC 2 cut(s) 60, 1357
MaeI CTAG 6 cut(s) 119, 545, 758, 861, 902, 1301
MaeII ACGT 3 cut(s) 685, 711, 1068
MaeIII GTNAC 3 cut(s) 593, 1018, 1250
MalI GATC 9 cut(s) 155, 183, 341, 397, 500, 510, 617, 848, 1056
MboI GATC 9 cut(s) 153, 181, 339, 395, 498, 508, 615, 846, 1054
MfeI CAATTG 2 cut(s) 422, 621
MflI RGATCY 3 cut(s) 153, 395, 846
MhlI GDGCHC 1 cut(s) 723
MluCI AATT 8 cut(s) 190, 296, 422, 621, 770, 1199, 1244, 1345
MlyI GAGTC 1 cut(s) 941
MmeI TCCRAC 1 cut(s) 26
MroI TCCGGA 1 cut(s) 744
MseI TTAA 4 cut(s) 834, 854, 1071, 1316
MslI CAYNNNNRTG 2 cut(s) 710, 1062
MspA1I CMGCKG 2 cut(s) 262, 842
MspI CCGG 1 cut(s) 745
MspR9I CCNGG 4 cut(s) 1040, 1234, 1273, 1283
MunI CAATTG 2 cut(s) 422, 621
Mva1269I GAATGC 1 cut(s) 1323
MvaI CCWGG 4 cut(s) 1040, 1234, 1273, 1283
MwoI GCNNNNNNNGC 3 cut(s) 124, 290, 1367
NcoI CCATGG 1 cut(s) 951
NdeI CATATG 1 cut(s) 1031
NdeII GATC 9 cut(s) 153, 181, 339, 395, 498, 508, 615, 846, 1054
NheI GCTAGC 1 cut(s) 118
NlaIII CATG 5 cut(s) 22, 31, 175, 955, 1061
NlaIV GGNNCC 5 cut(s) 165, 763, 848, 957, 1164
NmeAIII GCCGAG 1 cut(s) 805
NmuCI GTSAC 3 cut(s) 593, 1018, 1250
NspI RCATGY 1 cut(s) 175
PaeR7I CTCGAG 1 cut(s) 734
PciSI GCTCTTC 1 cut(s) 711
PctI GAATGC 1 cut(s) 1323
PfeI GAWTC 2 cut(s) 915, 1043
PfoI TCCNGGA 1 cut(s) 1038
PkrI GCNGC 4 cut(s) 292, 841, 1306, 1322
PleI GAGTC 1 cut(s) 941
PpsI GAGTC 1 cut(s) 941
PpuMI RGGWCCY 1 cut(s) 761
Psp5II RGGWCCY 1 cut(s) 761
Psp6I CCWGG 4 cut(s) 1038, 1232, 1271, 1281
PspEI GGTNACC 1 cut(s) 1018
PspFI CCCAGC 1 cut(s) 842
PspGI CCWGG 4 cut(s) 1038, 1232, 1271, 1281
PspN4I GGNNCC 5 cut(s) 165, 763, 848, 957, 1164
PspPI GGNCC 4 cut(s) 230, 412, 761, 956
PspPPI RGGWCCY 1 cut(s) 761
PsuI RGATCY 3 cut(s) 153, 395, 846
PvuII CAGCTG 2 cut(s) 262, 842
RsaI GTAC 5 cut(s) 700, 1095, 1153, 1337, 1382
RsaNI GTAC 5 cut(s) 699, 1094, 1152, 1336, 1381
RseI CAYNNNNRTG 2 cut(s) 710, 1062
SapI GCTCTTC 1 cut(s) 711
SaqAI TTAA 4 cut(s) 834, 854, 1071, 1316
SatI GCNGC 4 cut(s) 291, 840, 1305, 1321
Sau3AI GATC 9 cut(s) 153, 181, 339, 395, 498, 508, 615, 846, 1054
Sau96I GGNCC 4 cut(s) 230, 412, 761, 956
ScaI AGTACT 1 cut(s) 1382
SchI GAGTC 1 cut(s) 941
ScrFI CCNGG 4 cut(s) 1040, 1234, 1273, 1283
SduI GDGCHC 1 cut(s) 723
SfaNI GCATC 2 cut(s) 60, 1357
Sfr274I CTCGAG 1 cut(s) 734
SinI GGWCC 2 cut(s) 230, 761
SlaI CTCGAG 1 cut(s) 734
SmiMI CAYNNNNRTG 2 cut(s) 710, 1062
SmlI CTYRAG 3 cut(s) 572, 734, 877
SmoI CTYRAG 3 cut(s) 572, 734, 877
Sse9I AATT 8 cut(s) 190, 296, 422, 621, 770, 1199, 1244, 1345
SsiI CCGC 4 cut(s) 602, 817, 1320, 1352
SspMI CTAG 6 cut(s) 119, 545, 758, 861, 902, 1301
StyD4I CCNGG 4 cut(s) 1038, 1232, 1271, 1281
StyI CCWWGG 3 cut(s) 212, 951, 1291
TaaI ACNGT 3 cut(s) 69, 456, 703
TaiI ACGT 3 cut(s) 688, 714, 1071
TaqI TCGA 5 cut(s) 195, 319, 648, 688, 735
TasI AATT 8 cut(s) 190, 296, 422, 621, 770, 1199, 1244, 1345
TatI WGTACW 1 cut(s) 1380
TauI GCSGC 1 cut(s) 1323
TfiI GAWTC 2 cut(s) 915, 1043
Tru1I TTAA 4 cut(s) 834, 854, 1071, 1316
Tru9I TTAA 4 cut(s) 834, 854, 1071, 1316
TscAI CASTG 3 cut(s) 291, 1053, 1192
TseFI GTSAC 3 cut(s) 593, 1018, 1250
TseI GCWGC 3 cut(s) 290, 839, 1304
Tsp45I GTSAC 3 cut(s) 593, 1018, 1250
TspDTI ATGAA 3 cut(s) 44, 48, 448
TspRI CASTG 3 cut(s) 291, 1053, 1192
VpaK11BI GGWCC 2 cut(s) 230, 761
XapI RAATTY 3 cut(s) 190, 296, 770
XceI RCATGY 1 cut(s) 175
XcmI CCANNNNNNNNNTGG 1 cut(s) 1010
XhoI CTCGAG 1 cut(s) 734
XmiI GTMKAC 1 cut(s) 942
XspI CTAG 6 cut(s) 119, 545, 758, 861, 902, 1301
ZrmI AGTACT 1 cut(s) 1382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.