RLG00000018842

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001605
Physical Location & Seq
Reverse (-)
37619893 .. 37621302
1410 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018842

Sequence Viewer

Length: 1410 bp
ATGGCACGAAACGAAGACATGGCTTCCATGAATGAAGCTCCAAGTCGGAGCATCACAATCCTTGAACAGTTCTCTAAGGAGGAGTTGTTCAAAAACATAGAGGAAGCAGGAGAAAGGCTAGCTCAACCTCAGTCTCAAAGCTCAAAACCAAAGATCCAAAGGGTTCCCGACATGCTCCGAGATCACCCAAATTTCGAGAAATACTATGAGCCAAGGGCAGTAGCACTTGGTCCTTTCCATCATGATAAAGCAAGGTGTCAGCTGGCAGAGAAGTTCAAGCTTGCACTGGCAGCAAAATTTATCGAAGAAAGTGGCAGTCAAGCTGAAGATTTGCACAAGATCATTGAGGACAACATCAGCACACTAAAGGACTGCTACGATGAGGAAGCAACAGGGTCCTACACCGACGAGGCCCTCACACACTTGTTATTCTTAGATGGATGTTCAACCTTACAGTTCATATACTCCTTTATGAATGAAAAGTTAGCAACTTTCAATATCAAGAGAGATCAGGTGGCTTTTGCAGAACAAGATTTGTTCTTGCTAGAAAACCAACTCCCTTACCAAGTCCTCAAGCAGTTGATGAGCAAAAGCGACAAAGAGGAGCACTTGAGGGCCGCAATCTATGATTTTGTTAAAGGGGCAGCAAACAAAAAATCAAAAAGGCACAAACACAAAGGAACGCCTAAATCAGGAGAGAGTGTCATAAACATGGAAGAGCCCACTCATCTTCTCGAGCTTCTCCGGACAGAAATGCTAGGTCCCCAAATTGACGCTAAGAAGATAAATCCTAAACATGGCCAACAATCGTTCCGCAACATACAGGAGCTTAAAGCAGCAGGGATCCATGTAAAGCCTAGTAGGACAAGCACCTTGAGGGACATATCTTTTACTAATCCTCTAGGCTTTCTAGGATTCCTATATCTTCCACCAATATCAGTAGACGACTCCATGAGGCCTAAATTCTTGAATTTGATAGCCTATGAAATGTGTCCTGATTTCCAAAATGACTTTGGGGTTACCTCTTACATATGCTTCCTGGATTCACTGATTGATCATGCAGATGATGTTAAACAGCTAAGGAAGGCACGCATACTACACAATTTACTTGGGAGTGATGAAGAGGTGGCTCAACTTTTCAATGAGATAGGTACTGATTTGGTGCCTAACAGTGAAACATACCTCGGTGTCAAAGACAAATTAGAAGGGCACTACAAAAAGAGGTGGAAAACCTGGATGGCTCAATTCTGTCACGATCATTTCAGTAGCCCCTGGACTATCCTGGCTTTCCTTGGTGTTCTAGCAGCTCTAGGGTTAAGCGGCATCCAGACTTGGTACACAATCAATTCTCCCCCCTCTACCTGCGATGCTGTATGCGAGTACTTAAAGAAACAGCTAAAAAGAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

470

Amino Acids

53.56

Weight (kDa)

6.09

Isoelectric Point (pI)

50.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 52 - 437 1.8e-92 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1370
AccB1I GGYRCC 1 cut(s) 1162
AccI GTMKAC 1 cut(s) 942
AccIII TCCGGA 1 cut(s) 744
AciI CCGC 3 cut(s) 618, 814, 1320
AclWI GGATC 3 cut(s) 148, 838, 851
AcoI YGGCCR 1 cut(s) 799
AcsI RAATTY 4 cut(s) 190, 296, 962, 970
AcuI CTGAAG 1 cut(s) 345
AfaI GTAC 3 cut(s) 1153, 1337, 1382
AfiI CCNNNNNNNGG 2 cut(s) 692, 797
AgsI TTSAA 7 cut(s) 65, 91, 277, 447, 496, 970, 1141
AjnI CCWGG 4 cut(s) 1038, 1232, 1271, 1281
AloI GAACNNNNNNTCC 2 cut(s) 71, 103
Alw21I GWGCWC 1 cut(s) 609
Alw26I GTCTC 1 cut(s) 138
AlwI GGATC 3 cut(s) 148, 838, 851
Ama87I CYCGRG 1 cut(s) 734
Aor13HI TCCGGA 1 cut(s) 744
AoxI GGCC 4 cut(s) 411, 615, 799, 956
ApeKI GCWGC 4 cut(s) 290, 644, 836, 1304
ApoI RAATTY 4 cut(s) 190, 296, 962, 970
AspS9I GGNCC 5 cut(s) 230, 396, 412, 615, 761
AsuHPI GGTGA 1 cut(s) 176
AsuNHI GCTAGC 1 cut(s) 118
AvaI CYCGRG 1 cut(s) 734
AvaII GGWCC 3 cut(s) 230, 396, 761
BaeGI GKGCMC 1 cut(s) 1212
BalI TGGCCA 1 cut(s) 801
BamHI GGATCC 1 cut(s) 843
BanI GGYRCC 1 cut(s) 1162
BanII GRGCYC 1 cut(s) 723
BbsI GAAGAC 1 cut(s) 21
Bbv12I GWGCWC 1 cut(s) 609
BbvI GCAGC 4 cut(s) 302, 656, 848, 1316
BccI CCATC 3 cut(s) 246, 431, 1231
BciT130I CCWGG 4 cut(s) 1040, 1234, 1273, 1283
BclI TGATCA 1 cut(s) 1054
BcoDI GTCTC 1 cut(s) 138
BfaI CTAG 8 cut(s) 119, 545, 758, 858, 902, 911, 1301, 1310
BfuAI ACCTGC 1 cut(s) 1370
BisI GCNGC 6 cut(s) 291, 618, 645, 837, 1305, 1321
BlsI GCNGC 6 cut(s) 292, 619, 646, 838, 1306, 1322
BmcAI AGTACT 1 cut(s) 1382
Bme1390I CCNGG 4 cut(s) 1040, 1234, 1273, 1283
Bme18I GGWCC 3 cut(s) 230, 396, 761
BmeT110I CYCGRG 1 cut(s) 734
BmgT120I GGNCC 5 cut(s) 230, 396, 412, 615, 761
BmiI GGNNCC 5 cut(s) 165, 397, 763, 845, 1164
BmrFI CCNGG 4 cut(s) 1040, 1234, 1273, 1283
BmsI GCATC 3 cut(s) 60, 1332, 1357
BmtI GCTAGC 1 cut(s) 122
BpiI GAAGAC 1 cut(s) 21
Bpu10I CCTNAGC 1 cut(s) 1079
BpuEI CTTGAG 3 cut(s) 557, 631, 895
BsaJI CCNNGG 4 cut(s) 212, 1183, 1271, 1291
BsaWI WCCGGW 1 cut(s) 744
BsaXI ACNNNNNCTCC 4 cut(s) 71, 101, 687, 717
Bsc4I CCNNNNNNNGG 2 cut(s) 692, 797
Bse1I ACTGG 1 cut(s) 291
BseAI TCCGGA 1 cut(s) 744
BseBI CCWGG 4 cut(s) 1040, 1234, 1273, 1283
BseDI CCNNGG 4 cut(s) 212, 1183, 1271, 1291
BseGI GGATG 3 cut(s) 446, 1242, 1323
BseLI CCNNNNNNNGG 2 cut(s) 692, 797
BseMII CTCAG 1 cut(s) 143
BseNI ACTGG 1 cut(s) 291
BseRI GAGGAG 2 cut(s) 95, 617
BseSI GKGCMC 1 cut(s) 1212
BseXI GCAGC 4 cut(s) 302, 656, 848, 1316
BshFI GGCC 4 cut(s) 413, 617, 801, 958
BshNI GGYRCC 1 cut(s) 1162
BsiHKAI GWGCWC 1 cut(s) 609
BsiHKCI CYCGRG 1 cut(s) 734
BsiSI CCGG 1 cut(s) 745
BslFI GGGAC 2 cut(s) 747, 893
BslI CCNNNNNNNGG 2 cut(s) 692, 797
BsmAI GTCTC 1 cut(s) 138
BsmFI GGGAC 2 cut(s) 747, 893
BsnI GGCC 4 cut(s) 413, 617, 801, 958
BsoBI CYCGRG 1 cut(s) 734
Bsp1286I GDGCHC 3 cut(s) 609, 723, 1212
Bsp13I TCCGGA 1 cut(s) 744
Bsp143I GATC 7 cut(s) 153, 181, 339, 508, 843, 1054, 1255
BspACI CCGC 3 cut(s) 618, 814, 1320
BspANI GGCC 4 cut(s) 413, 617, 801, 958
BspCNI CTCAG 1 cut(s) 142
BspEI TCCGGA 1 cut(s) 744
BspHI TCATGA 1 cut(s) 241
BspLI GGNNCC 5 cut(s) 165, 397, 763, 845, 1164
BspMI ACCTGC 1 cut(s) 1370
BspOI GCTAGC 1 cut(s) 122
BspPI GGATC 3 cut(s) 148, 838, 851
BspQI GCTCTTC 1 cut(s) 711
BspT107I GGYRCC 1 cut(s) 1162
BsrI ACTGG 1 cut(s) 291
BssECI CCNNGG 4 cut(s) 212, 1183, 1271, 1291
BssMI GATC 7 cut(s) 153, 181, 339, 508, 843, 1054, 1255
BssT1I CCWWGG 2 cut(s) 212, 1291
Bst2UI CCWGG 4 cut(s) 1040, 1234, 1273, 1283
Bst4CI ACNGT 3 cut(s) 69, 456, 1172
Bst6I CTCTTC 2 cut(s) 711, 1116
BstC8I GCNNGC 4 cut(s) 120, 264, 282, 1090
BstDEI CTNAG 5 cut(s) 75, 129, 433, 777, 1079
BstEII GGTNACC 1 cut(s) 1018
BstENI CCTNNNNNAGG 1 cut(s) 690
BstF5I GGATG 3 cut(s) 446, 1242, 1323
BstKTI GATC 7 cut(s) 156, 184, 342, 511, 846, 1057, 1258
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 7 cut(s) 153, 181, 339, 508, 843, 1054, 1255
BstMWI GCNNNNNNNGC 1 cut(s) 290
BstNI CCWGG 4 cut(s) 1040, 1234, 1273, 1283
BstNSI RCATGY 1 cut(s) 175
BstPI GGTNACC 1 cut(s) 1018
BstSCI CCNGG 4 cut(s) 1038, 1232, 1271, 1281
BstSLI GKGCMC 1 cut(s) 1212
BstV1I GCAGC 4 cut(s) 302, 656, 848, 1316
BstV2I GAAGAC 1 cut(s) 21
BstX2I RGATCY 2 cut(s) 153, 843
BstYI RGATCY 2 cut(s) 153, 843
BsuRI GGCC 4 cut(s) 413, 617, 801, 958
BtgZI GCGATG 1 cut(s) 1380
BtsCI GGATG 3 cut(s) 446, 1242, 1323
BtsIMutI CAGTG 3 cut(s) 284, 1046, 1177
BveI ACCTGC 1 cut(s) 1370
Cac8I GCNNGC 4 cut(s) 120, 264, 282, 1090
CciI TCATGA 1 cut(s) 241
Cfr13I GGNCC 5 cut(s) 230, 396, 412, 615, 761
CseI GACGC 1 cut(s) 782
Csp6I GTAC 3 cut(s) 1152, 1336, 1381
CviAII CATG 9 cut(s) 19, 28, 172, 242, 712, 797, 848, 952, 1058
CviQI GTAC 3 cut(s) 1152, 1336, 1381
DdeI CTNAG 5 cut(s) 75, 129, 433, 777, 1079
DpnI GATC 7 cut(s) 155, 183, 341, 510, 845, 1056, 1257
DpnII GATC 7 cut(s) 153, 181, 339, 508, 843, 1054, 1255
EaeI YGGCCR 1 cut(s) 799
Eam1104I CTCTTC 2 cut(s) 711, 1116
EarI CTCTTC 2 cut(s) 711, 1116
Eco130I CCWWGG 2 cut(s) 212, 1291
Eco147I AGGCCT 1 cut(s) 958
Eco24I GRGCYC 1 cut(s) 723
Eco47I GGWCC 3 cut(s) 230, 396, 761
Eco57I CTGAAG 1 cut(s) 345
Eco88I CYCGRG 1 cut(s) 734
Eco91I GGTNACC 1 cut(s) 1018
EcoNI CCTNNNNNAGG 1 cut(s) 690
EcoO109I RGGNCCY 3 cut(s) 396, 412, 761
EcoO65I GGTNACC 1 cut(s) 1018
EcoRII CCWGG 4 cut(s) 1038, 1232, 1271, 1281
EcoT14I CCWWGG 2 cut(s) 212, 1291
EcoT38I GRGCYC 1 cut(s) 723
ErhI CCWWGG 2 cut(s) 212, 1291
FaeI CATG 9 cut(s) 22, 31, 175, 245, 715, 800, 851, 955, 1061
FaqI GGGAC 2 cut(s) 747, 893
FatI CATG 9 cut(s) 18, 27, 171, 241, 711, 796, 847, 951, 1057
FauNDI CATATG 1 cut(s) 1031
FbaI TGATCA 1 cut(s) 1054
FblI GTMKAC 1 cut(s) 942
Fnu4HI GCNGC 6 cut(s) 291, 618, 645, 837, 1305, 1321
FokI GGATG 3 cut(s) 453, 1249, 1310
FriOI GRGCYC 1 cut(s) 723
Fsp4HI GCNGC 6 cut(s) 291, 618, 645, 837, 1305, 1321
FspBI CTAG 8 cut(s) 119, 545, 758, 858, 902, 911, 1301, 1310
GluI GCNGC 6 cut(s) 291, 618, 645, 837, 1305, 1321
HaeIII GGCC 4 cut(s) 413, 617, 801, 958
HapII CCGG 1 cut(s) 745
HgaI GACGC 1 cut(s) 782
Hin1II CATG 9 cut(s) 22, 31, 175, 245, 715, 800, 851, 955, 1061
HindIII AAGCTT 1 cut(s) 278
HinfI GANTC 3 cut(s) 915, 947, 1043
HpaII CCGG 1 cut(s) 745
HphI GGTGA 1 cut(s) 176
Hpy166II GTNNAC 2 cut(s) 943, 1338
Hpy188I TCNGA 2 cut(s) 48, 179
Hpy8I GTNNAC 2 cut(s) 943, 1338
Hpy99I CGWCG 1 cut(s) 410
HpyAV CCTTC 2 cut(s) 1078, 1199
HpyCH4III ACNGT 3 cut(s) 69, 456, 1172
HpyCH4V TGCA 4 cut(s) 284, 334, 524, 1061
HpyF10VI GCNNNNNNNGC 1 cut(s) 290
HpyF3I CTNAG 5 cut(s) 75, 129, 433, 777, 1079
Hsp92II CATG 9 cut(s) 22, 31, 175, 245, 715, 800, 851, 955, 1061
Kpn2I TCCGGA 1 cut(s) 744
Ksp22I TGATCA 1 cut(s) 1054
Kzo9I GATC 7 cut(s) 153, 181, 339, 508, 843, 1054, 1255
LguI GCTCTTC 1 cut(s) 711
LmnI GCTCC 5 cut(s) 43, 48, 180, 604, 826
Lsp1109I GCAGC 4 cut(s) 302, 656, 848, 1316
LweI GCATC 3 cut(s) 60, 1332, 1357
MaeI CTAG 8 cut(s) 119, 545, 758, 858, 902, 911, 1301, 1310
MaeIII GTNAC 2 cut(s) 1018, 1250
MalI GATC 7 cut(s) 155, 183, 341, 510, 845, 1056, 1257
MboI GATC 7 cut(s) 153, 181, 339, 508, 843, 1054, 1255
MboII GAAGA 8 cut(s) 26, 317, 338, 722, 728, 793, 917, 1133
MflI RGATCY 2 cut(s) 153, 843
MhlI GDGCHC 3 cut(s) 609, 723, 1212
MlsI TGGCCA 1 cut(s) 801
MluCI AATT 9 cut(s) 190, 296, 768, 962, 970, 1102, 1199, 1244, 1345
MluNI TGGCCA 1 cut(s) 801
MlyI GAGTC 1 cut(s) 941
MmeI TCCRAC 1 cut(s) 26
Mox20I TGGCCA 1 cut(s) 801
MroI TCCGGA 1 cut(s) 744
MscI TGGCCA 1 cut(s) 801
MseI TTAA 5 cut(s) 636, 831, 1071, 1316, 1385
MslI CAYNNNNRTG 2 cut(s) 710, 1062
Msp20I TGGCCA 1 cut(s) 801
MspA1I CMGCKG 1 cut(s) 262
MspI CCGG 1 cut(s) 745
MspR9I CCNGG 4 cut(s) 1040, 1234, 1273, 1283
MvaI CCWGG 4 cut(s) 1040, 1234, 1273, 1283
MwoI GCNNNNNNNGC 1 cut(s) 290
NdeI CATATG 1 cut(s) 1031
NdeII GATC 7 cut(s) 153, 181, 339, 508, 843, 1054, 1255
NheI GCTAGC 1 cut(s) 118
NlaIII CATG 9 cut(s) 22, 31, 175, 245, 715, 800, 851, 955, 1061
NlaIV GGNNCC 5 cut(s) 165, 397, 763, 845, 1164
NmuCI GTSAC 1 cut(s) 1250
NspI RCATGY 1 cut(s) 175
PaeR7I CTCGAG 1 cut(s) 734
PagI TCATGA 1 cut(s) 241
PceI AGGCCT 1 cut(s) 958
PciSI GCTCTTC 1 cut(s) 711
PfeI GAWTC 2 cut(s) 915, 1043
PfoI TCCNGGA 1 cut(s) 1038
PkrI GCNGC 6 cut(s) 292, 619, 646, 838, 1306, 1322
PleI GAGTC 1 cut(s) 941
PpsI GAGTC 1 cut(s) 941
PpuMI RGGWCCY 2 cut(s) 396, 761
Psp5II RGGWCCY 2 cut(s) 396, 761
Psp6I CCWGG 4 cut(s) 1038, 1232, 1271, 1281
PspEI GGTNACC 1 cut(s) 1018
PspGI CCWGG 4 cut(s) 1038, 1232, 1271, 1281
PspN4I GGNNCC 5 cut(s) 165, 397, 763, 845, 1164
PspPI GGNCC 5 cut(s) 230, 396, 412, 615, 761
PspPPI RGGWCCY 2 cut(s) 396, 761
PsuI RGATCY 2 cut(s) 153, 843
PvuII CAGCTG 1 cut(s) 262
RsaI GTAC 3 cut(s) 1153, 1337, 1382
RsaNI GTAC 3 cut(s) 1152, 1336, 1381
RseI CAYNNNNRTG 2 cut(s) 710, 1062
SapI GCTCTTC 1 cut(s) 711
SaqAI TTAA 5 cut(s) 636, 831, 1071, 1316, 1385
SatI GCNGC 6 cut(s) 291, 618, 645, 837, 1305, 1321
Sau3AI GATC 7 cut(s) 153, 181, 339, 508, 843, 1054, 1255
Sau96I GGNCC 5 cut(s) 230, 396, 412, 615, 761
ScaI AGTACT 1 cut(s) 1382
SchI GAGTC 1 cut(s) 941
ScrFI CCNGG 4 cut(s) 1040, 1234, 1273, 1283
SduI GDGCHC 3 cut(s) 609, 723, 1212
SfaNI GCATC 3 cut(s) 60, 1332, 1357
Sfr274I CTCGAG 1 cut(s) 734
SinI GGWCC 3 cut(s) 230, 396, 761
SlaI CTCGAG 1 cut(s) 734
SmiMI CAYNNNNRTG 2 cut(s) 710, 1062
SmlI CTYRAG 4 cut(s) 572, 610, 734, 874
SmoI CTYRAG 4 cut(s) 572, 610, 734, 874
Sse9I AATT 9 cut(s) 190, 296, 768, 962, 970, 1102, 1199, 1244, 1345
SseBI AGGCCT 1 cut(s) 958
SsiI CCGC 3 cut(s) 618, 814, 1320
SspMI CTAG 8 cut(s) 119, 545, 758, 858, 902, 911, 1301, 1310
StuI AGGCCT 1 cut(s) 958
StyD4I CCNGG 4 cut(s) 1038, 1232, 1271, 1281
StyI CCWWGG 2 cut(s) 212, 1291
TaaI ACNGT 3 cut(s) 69, 456, 1172
TaqI TCGA 3 cut(s) 195, 303, 735
TasI AATT 9 cut(s) 190, 296, 768, 962, 970, 1102, 1199, 1244, 1345
TatI WGTACW 1 cut(s) 1380
TauI GCSGC 2 cut(s) 620, 1323
TfiI GAWTC 2 cut(s) 915, 1043
Tru1I TTAA 5 cut(s) 636, 831, 1071, 1316, 1385
Tru9I TTAA 5 cut(s) 636, 831, 1071, 1316, 1385
TscAI CASTG 3 cut(s) 291, 1053, 1177
TseFI GTSAC 1 cut(s) 1250
TseI GCWGC 4 cut(s) 290, 644, 836, 1304
Tsp45I GTSAC 1 cut(s) 1250
TspDTI ATGAA 7 cut(s) 44, 48, 448, 488, 492, 999, 1134
TspRI CASTG 3 cut(s) 291, 1053, 1177
VpaK11BI GGWCC 3 cut(s) 230, 396, 761
XagI CCTNNNNNAGG 1 cut(s) 690
XapI RAATTY 4 cut(s) 190, 296, 962, 970
XceI RCATGY 1 cut(s) 175
XcmI CCANNNNNNNNNTGG 1 cut(s) 1010
XhoI CTCGAG 1 cut(s) 734
XmiI GTMKAC 1 cut(s) 942
XspI CTAG 8 cut(s) 119, 545, 758, 858, 902, 911, 1301, 1310
ZrmI AGTACT 1 cut(s) 1382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.