Rmu_sc0010311.1_g000010

UPF0481 protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010311.1
Physical Location & Seq
Reverse (-)
40653 .. 42128
1476 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010311.1_g000010.1.cds

Sequence Viewer

Length: 1476 bp
atggcacgaaatgaagacttggcttccatgaatgaagctccagaacggagcatcacaattgatgacgagttatccaacaaggaggagttgttcaaagacataaaaggagcaaaaaaaaagctagctcagtttcaaagttcaaaaccaaagatccaaagggttcccgacatgcttagagatcagtcagatcaccaaaaggttcccgacatgcttagagatcagtcagatcaccgaaatttcgagaaatactatgagccaagggcagtagcaattggtcctttccatcattataaaccaaggtgtcaactggcagagaagttcaagcttgcactggcagaaaaatttattgaagacagcggccgtcaagttgaagatttgcacaagatcattgaggacaacatcaacacactgaaggactgctatgatgaggaagcaacaaggtcctacaccaacaaggccctcacaaacttgttattcttagatggatgttcaaccttacagttcatatactccttcatggagaataagttagcaagtttcaacatcaagagagatcaggtggcttttgcagaacaggatttgttcttgctagaaaaccaactcccttaccaagtcctcaagctgttaatgagcttaagtgccaaagaggggaacttgaaggccgcaatcgatggatttgttggaaggaacatcatggcagcagaaaaaaaatggaaatggcacaaacacaaaaaaacacgtcaaccaggagatagtgtcataaacatggaagagcccactcatcttctcgagcttctccggacaaaaatgctaggccccaaatcggacaacccctttcaaacaaaatctgaagatggccgacaatcattccgcaacatacaggagcttaaagcagcggggatccatttaaggcgtagtaagacagggaccttgagagacatatcttttactcatcctctagggcttctaggctttgtaggattcctatatcttccaccaatatcagtagacgactccatgaggcctaagttcttgaatttgatagccgatgaaatgtgtcctgatttccaaaatgactttgatgtcacctcttacatatgcttcctcgattcactaattgatcatgcagatgatgttaaacagctaaggtcggcacgcgtactacacaacttacttggtagtgatgaagaggtggctcaaattttcaatgagataggtactggcttggtgcctaacagtgacatatacgtcagtgtcaaagttaaattagaaaagtactacaaaaccaagtggaaaacctggatggctcaattctgtcatgatcatttctgtagcccctggactatcctggctttccttggtgttctagcagctctggggttaagcggcatccagacttggtacacaatcaaatctcccccctctgcctgcgatgctgtatgcgagtacttgaagaaacagctgaaaatagagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

491

Amino Acids

56.41

Weight (kDa)

6.72

Isoelectric Point (pI)

47.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 291
AasI GACNNNNNNGTC 2 cut(s) 1082, 1247
AccB1I GGYRCC 1 cut(s) 1228
AccI GTMKAC 1 cut(s) 1008
AccII CGCG 1 cut(s) 1158
AccIII TCCGGA 1 cut(s) 798
AciI CCGC 5 cut(s) 357, 663, 871, 896, 1386
AclWI GGATC 3 cut(s) 145, 895, 908
AcoI YGGCCR 2 cut(s) 358, 856
AcsI RAATTY 4 cut(s) 235, 341, 1036, 1200
AcuI CTGAAG 2 cut(s) 431, 870
AfaI GTAC 5 cut(s) 1161, 1219, 1277, 1403, 1448
AfiI CCNNNNNNNGG 2 cut(s) 648, 823
AflII CTTAAG 1 cut(s) 634
AflIII ACRYGT 2 cut(s) 737, 1156
AjiI CACGTC 1 cut(s) 740
AjnI CCWGG 4 cut(s) 745, 1298, 1337, 1347
AloI GAACNNNNNNTCC 2 cut(s) 74, 106
Alw26I GTCTC 1 cut(s) 930
AlwI GGATC 3 cut(s) 145, 895, 908
Ama87I CYCGRG 1 cut(s) 788
Aor13HI TCCGGA 1 cut(s) 798
AoxI GGCC 6 cut(s) 358, 456, 660, 814, 856, 1022
ApeKI GCWGC 3 cut(s) 698, 893, 1370
ApoI RAATTY 4 cut(s) 235, 341, 1036, 1200
AspS9I GGNCC 5 cut(s) 275, 441, 457, 815, 927
AsuHPI GGTGA 3 cut(s) 182, 221, 1078
AsuNHI GCTAGC 1 cut(s) 121
AvaI CYCGRG 1 cut(s) 788
AvaII GGWCC 3 cut(s) 275, 441, 927
BamHI GGATCC 1 cut(s) 900
BanI GGYRCC 1 cut(s) 1228
BanII GRGCYC 1 cut(s) 777
BbsI GAAGAC 2 cut(s) 21, 357
BbvI GCAGC 3 cut(s) 710, 905, 1382
BccI CCATC 5 cut(s) 291, 476, 665, 848, 1297
BceAI ACGGC 1 cut(s) 345
BciT130I CCWGG 4 cut(s) 747, 1300, 1339, 1349
BclI TGATCA 2 cut(s) 1120, 1321
BcoDI GTCTC 1 cut(s) 930
BfaI CTAG 6 cut(s) 122, 590, 812, 959, 968, 1367
BfmI CTRYAG 1 cut(s) 1330
BfrI CTTAAG 1 cut(s) 634
BisI GCNGC 6 cut(s) 358, 663, 699, 894, 1371, 1387
BlsI GCNGC 6 cut(s) 359, 664, 700, 895, 1372, 1388
BmcAI AGTACT 2 cut(s) 1277, 1448
Bme1390I CCNGG 4 cut(s) 747, 1300, 1339, 1349
Bme18I GGWCC 3 cut(s) 275, 441, 927
BmeT110I CYCGRG 1 cut(s) 788
BmgBI CACGTC 1 cut(s) 740
BmgT120I GGNCC 5 cut(s) 275, 441, 457, 815, 927
BmiI GGNNCC 6 cut(s) 162, 201, 817, 902, 928, 1230
BmrFI CCNGG 4 cut(s) 747, 1300, 1339, 1349
BmsI GCATC 3 cut(s) 60, 1398, 1423
BmtI GCTAGC 1 cut(s) 125
BpiI GAAGAC 2 cut(s) 21, 357
BpmI CTGGAG 1 cut(s) 24
Bpu10I CCTNAGC 1 cut(s) 1145
BpuEI CTTGAG 2 cut(s) 602, 952
Bsa29I ATCGAT 1 cut(s) 669
BsaJI CCNNGG 4 cut(s) 257, 296, 1337, 1357
BsaWI WCCGGW 1 cut(s) 798
BsaXI ACNNNNNCTCC 6 cut(s) 74, 104, 512, 542, 741, 771
Bsc4I CCNNNNNNNGG 2 cut(s) 648, 823
Bse1I ACTGG 3 cut(s) 312, 336, 1225
BseAI TCCGGA 1 cut(s) 798
BseBI CCWGG 4 cut(s) 747, 1300, 1339, 1349
BseCI ATCGAT 1 cut(s) 669
BseDI CCNNGG 4 cut(s) 257, 296, 1337, 1357
BseGI GGATG 4 cut(s) 491, 952, 1308, 1389
BseLI CCNNNNNNNGG 2 cut(s) 648, 823
BseMII CTCAG 1 cut(s) 140
BseNI ACTGG 3 cut(s) 312, 336, 1225
BseRI GAGGAG 1 cut(s) 98
BseX3I CGGCCG 1 cut(s) 358
BseXI GCAGC 3 cut(s) 710, 905, 1382
Bsh1236I CGCG 1 cut(s) 1158
Bsh1285I CGRYCG 1 cut(s) 361
BshFI GGCC 6 cut(s) 360, 458, 662, 816, 858, 1024
BshNI GGYRCC 1 cut(s) 1228
BshVI ATCGAT 1 cut(s) 669
BsiEI CGRYCG 1 cut(s) 361
BsiHKCI CYCGRG 1 cut(s) 788
BsiSI CCGG 1 cut(s) 799
BslFI GGGAC 1 cut(s) 940
BslI CCNNNNNNNGG 2 cut(s) 648, 823
BsmAI GTCTC 1 cut(s) 930
BsmFI GGGAC 1 cut(s) 940
BsnI GGCC 6 cut(s) 360, 458, 662, 816, 858, 1024
BsoBI CYCGRG 1 cut(s) 788
Bsp1286I GDGCHC 1 cut(s) 777
Bsp13I TCCGGA 1 cut(s) 798
BspACI CCGC 5 cut(s) 357, 663, 871, 896, 1386
BspANI GGCC 6 cut(s) 360, 458, 662, 816, 858, 1024
BspCNI CTCAG 1 cut(s) 139
BspDI ATCGAT 1 cut(s) 669
BspEI TCCGGA 1 cut(s) 798
BspFNI CGCG 1 cut(s) 1158
BspHI TCATGA 1 cut(s) 1318
BspLI GGNNCC 6 cut(s) 162, 201, 817, 902, 928, 1230
BspOI GCTAGC 1 cut(s) 125
BspPI GGATC 3 cut(s) 145, 895, 908
BspQI GCTCTTC 1 cut(s) 765
BspT107I GGYRCC 1 cut(s) 1228
BspTI CTTAAG 1 cut(s) 634
BsrI ACTGG 3 cut(s) 312, 336, 1225
BssECI CCNNGG 4 cut(s) 257, 296, 1337, 1357
BssT1I CCWWGG 3 cut(s) 257, 296, 1357
Bst2UI CCWGG 4 cut(s) 747, 1300, 1339, 1349
Bst4CI ACNGT 2 cut(s) 501, 1238
Bst6I CTCTTC 2 cut(s) 765, 1182
BstAFI CTTAAG 1 cut(s) 634
BstC8I GCNNGC 4 cut(s) 123, 327, 1156, 1429
BstDEI CTNAG 6 cut(s) 126, 173, 212, 478, 1026, 1145
BstF5I GGATG 4 cut(s) 491, 952, 1308, 1389
BstFNI CGCG 1 cut(s) 1158
BstMAI GTCTC 1 cut(s) 930
BstMCI CGRYCG 1 cut(s) 361
BstMWI GCNNNNNNNGC 1 cut(s) 1433
BstNI CCWGG 4 cut(s) 747, 1300, 1339, 1349
BstNSI RCATGY 2 cut(s) 172, 211
BstSCI CCNGG 4 cut(s) 745, 1298, 1337, 1347
BstSFI CTRYAG 1 cut(s) 1330
BstUI CGCG 1 cut(s) 1158
BstV1I GCAGC 3 cut(s) 710, 905, 1382
BstV2I GAAGAC 2 cut(s) 21, 357
BstX2I RGATCY 2 cut(s) 150, 900
BstYI RGATCY 2 cut(s) 150, 900
BstZI CGGCCG 1 cut(s) 358
Bsu15I ATCGAT 1 cut(s) 669
BsuRI GGCC 6 cut(s) 360, 458, 662, 816, 858, 1024
BsuTUI ATCGAT 1 cut(s) 669
BtgZI GCGATG 1 cut(s) 1446
BtrI CACGTC 1 cut(s) 740
BtsCI GGATG 4 cut(s) 491, 952, 1308, 1389
BtsIMutI CAGTG 4 cut(s) 329, 407, 1243, 1258
Cac8I GCNNGC 4 cut(s) 123, 327, 1156, 1429
CciI TCATGA 1 cut(s) 1318
Cfr13I GGNCC 5 cut(s) 275, 441, 457, 815, 927
ClaI ATCGAT 1 cut(s) 669
Csp6I GTAC 5 cut(s) 1160, 1218, 1276, 1402, 1447
CviAII CATG 9 cut(s) 28, 169, 208, 517, 694, 766, 1018, 1124, 1319
CviQI GTAC 5 cut(s) 1160, 1218, 1276, 1402, 1447
DdeI CTNAG 6 cut(s) 126, 173, 212, 478, 1026, 1145
DrdI GACNNNNNNGTC 2 cut(s) 1082, 1247
DseDI GACNNNNNNGTC 2 cut(s) 1082, 1247
EaeI YGGCCR 2 cut(s) 358, 856
EagI CGGCCG 1 cut(s) 358
Eam1104I CTCTTC 2 cut(s) 765, 1182
EarI CTCTTC 2 cut(s) 765, 1182
EclXI CGGCCG 1 cut(s) 358
Eco130I CCWWGG 3 cut(s) 257, 296, 1357
Eco147I AGGCCT 1 cut(s) 1024
Eco24I GRGCYC 1 cut(s) 777
Eco47I GGWCC 3 cut(s) 275, 441, 927
Eco52I CGGCCG 1 cut(s) 358
Eco57I CTGAAG 2 cut(s) 431, 870
Eco88I CYCGRG 1 cut(s) 788
EcoO109I RGGNCCY 4 cut(s) 441, 457, 815, 927
EcoRII CCWGG 4 cut(s) 745, 1298, 1337, 1347
EcoT14I CCWWGG 3 cut(s) 257, 296, 1357
EcoT38I GRGCYC 1 cut(s) 777
ErhI CCWWGG 3 cut(s) 257, 296, 1357
FaeI CATG 9 cut(s) 31, 172, 211, 520, 697, 769, 1021, 1127, 1322
FaqI GGGAC 1 cut(s) 940
FatI CATG 9 cut(s) 27, 168, 207, 516, 693, 765, 1017, 1123, 1318
FauI CCCGC 1 cut(s) 889
FauNDI CATATG 1 cut(s) 1097
FbaI TGATCA 2 cut(s) 1120, 1321
FblI GTMKAC 1 cut(s) 1008
Fnu4HI GCNGC 6 cut(s) 358, 663, 699, 894, 1371, 1387
FokI GGATG 4 cut(s) 498, 939, 1315, 1376
FriOI GRGCYC 1 cut(s) 777
Fsp4HI GCNGC 6 cut(s) 358, 663, 699, 894, 1371, 1387
FspBI CTAG 6 cut(s) 122, 590, 812, 959, 968, 1367
GluI GCNGC 6 cut(s) 358, 663, 699, 894, 1371, 1387
GsuI CTGGAG 1 cut(s) 24
HaeIII GGCC 6 cut(s) 360, 458, 662, 816, 858, 1024
HapII CCGG 1 cut(s) 799
Hin1II CATG 9 cut(s) 31, 172, 211, 520, 697, 769, 1021, 1127, 1322
HincII GTYRAC 2 cut(s) 305, 743
HindII GTYRAC 2 cut(s) 305, 743
HindIII AAGCTT 1 cut(s) 323
HinfI GANTC 3 cut(s) 981, 1013, 1109
HpaII CCGG 1 cut(s) 799
HphI GGTGA 3 cut(s) 182, 221, 1078
Hpy166II GTNNAC 4 cut(s) 305, 743, 1009, 1404
Hpy188I TCNGA 4 cut(s) 187, 226, 826, 850
Hpy8I GTNNAC 4 cut(s) 305, 743, 1009, 1404
HpyAV CCTTC 4 cut(s) 406, 523, 652, 678
HpyCH4III ACNGT 2 cut(s) 501, 1238
HpyCH4IV ACGT 2 cut(s) 739, 1248
HpyCH4V TGCA 4 cut(s) 329, 379, 569, 1127
HpyF10VI GCNNNNNNNGC 1 cut(s) 1433
HpyF3I CTNAG 6 cut(s) 126, 173, 212, 478, 1026, 1145
HpySE526I ACGT 2 cut(s) 739, 1248
Hsp92II CATG 9 cut(s) 31, 172, 211, 520, 697, 769, 1021, 1127, 1322
Kpn2I TCCGGA 1 cut(s) 798
Ksp22I TGATCA 2 cut(s) 1120, 1321
LguI GCTCTTC 1 cut(s) 765
LmnI GCTCC 4 cut(s) 43, 48, 107, 883
Lsp1109I GCAGC 3 cut(s) 710, 905, 1382
LweI GCATC 3 cut(s) 60, 1398, 1423
MaeI CTAG 6 cut(s) 122, 590, 812, 959, 968, 1367
MaeII ACGT 2 cut(s) 739, 1248
MaeIII GTNAC 2 cut(s) 1084, 1238
MboII GAAGA 9 cut(s) 26, 362, 383, 776, 782, 863, 983, 1199, 1465
MfeI CAATTG 2 cut(s) 57, 270
MflI RGATCY 2 cut(s) 150, 900
MhlI GDGCHC 1 cut(s) 777
MluCI AATT 9 cut(s) 57, 235, 270, 341, 1036, 1116, 1200, 1265, 1310
MluI ACGCGT 1 cut(s) 1156
MlyI GAGTC 1 cut(s) 1007
MmeI TCCRAC 2 cut(s) 99, 661
MroI TCCGGA 1 cut(s) 798
MseI TTAA 7 cut(s) 626, 635, 888, 908, 1137, 1263, 1382
MslI CAYNNNNRTG 2 cut(s) 764, 1128
MspA1I CMGCKG 3 cut(s) 357, 896, 1462
MspCI CTTAAG 1 cut(s) 634
MspI CCGG 1 cut(s) 799
MspR9I CCNGG 4 cut(s) 747, 1300, 1339, 1349
MunI CAATTG 2 cut(s) 57, 270
MvaI CCWGG 4 cut(s) 747, 1300, 1339, 1349
MvnI CGCG 1 cut(s) 1158
MwoI GCNNNNNNNGC 1 cut(s) 1433
NdeI CATATG 1 cut(s) 1097
NheI GCTAGC 1 cut(s) 121
NlaIII CATG 9 cut(s) 31, 172, 211, 520, 697, 769, 1021, 1127, 1322
NlaIV GGNNCC 6 cut(s) 162, 201, 817, 902, 928, 1230
NmuCI GTSAC 2 cut(s) 1084, 1238
NspI RCATGY 2 cut(s) 172, 211
PaeR7I CTCGAG 1 cut(s) 788
PagI TCATGA 1 cut(s) 1318
PceI AGGCCT 1 cut(s) 1024
PciSI GCTCTTC 1 cut(s) 765
PfeI GAWTC 2 cut(s) 981, 1109
PkrI GCNGC 6 cut(s) 359, 664, 700, 895, 1372, 1388
PleI GAGTC 1 cut(s) 1007
PpsI GAGTC 1 cut(s) 1007
PpuMI RGGWCCY 2 cut(s) 441, 927
PsiI TTATAA 1 cut(s) 291
Psp5II RGGWCCY 2 cut(s) 441, 927
Psp6I CCWGG 4 cut(s) 745, 1298, 1337, 1347
PspGI CCWGG 4 cut(s) 745, 1298, 1337, 1347
PspN4I GGNNCC 6 cut(s) 162, 201, 817, 902, 928, 1230
PspPI GGNCC 5 cut(s) 275, 441, 457, 815, 927
PspPPI RGGWCCY 2 cut(s) 441, 927
PsuI RGATCY 2 cut(s) 150, 900
PvuII CAGCTG 1 cut(s) 1462
RsaI GTAC 5 cut(s) 1161, 1219, 1277, 1403, 1448
RsaNI GTAC 5 cut(s) 1160, 1218, 1276, 1402, 1447
RseI CAYNNNNRTG 2 cut(s) 764, 1128
SapI GCTCTTC 1 cut(s) 765
SaqAI TTAA 7 cut(s) 626, 635, 888, 908, 1137, 1263, 1382
SatI GCNGC 6 cut(s) 358, 663, 699, 894, 1371, 1387
Sau96I GGNCC 5 cut(s) 275, 441, 457, 815, 927
ScaI AGTACT 2 cut(s) 1277, 1448
SchI GAGTC 1 cut(s) 1007
ScrFI CCNGG 4 cut(s) 747, 1300, 1339, 1349
SduI GDGCHC 1 cut(s) 777
SfaNI GCATC 3 cut(s) 60, 1398, 1423
SfcI CTRYAG 1 cut(s) 1330
Sfr274I CTCGAG 1 cut(s) 788
SinI GGWCC 3 cut(s) 275, 441, 927
SlaI CTCGAG 1 cut(s) 788
SmiMI CAYNNNNRTG 2 cut(s) 764, 1128
SmlI CTYRAG 4 cut(s) 617, 634, 788, 931
SmoI CTYRAG 4 cut(s) 617, 634, 788, 931
Sse9I AATT 9 cut(s) 57, 235, 270, 341, 1036, 1116, 1200, 1265, 1310
SseBI AGGCCT 1 cut(s) 1024
SsiI CCGC 5 cut(s) 357, 663, 871, 896, 1386
SspMI CTAG 6 cut(s) 122, 590, 812, 959, 968, 1367
StuI AGGCCT 1 cut(s) 1024
StyD4I CCNGG 4 cut(s) 745, 1298, 1337, 1347
StyI CCWWGG 3 cut(s) 257, 296, 1357
TaaI ACNGT 2 cut(s) 501, 1238
TaiI ACGT 2 cut(s) 742, 1251
TaqI TCGA 4 cut(s) 240, 669, 789, 1107
TasI AATT 9 cut(s) 57, 235, 270, 341, 1036, 1116, 1200, 1265, 1310
TatI WGTACW 2 cut(s) 1275, 1446
TauI GCSGC 3 cut(s) 360, 665, 1389
TfiI GAWTC 2 cut(s) 981, 1109
Tru1I TTAA 7 cut(s) 626, 635, 888, 908, 1137, 1263, 1382
Tru9I TTAA 7 cut(s) 626, 635, 888, 908, 1137, 1263, 1382
TscAI CASTG 4 cut(s) 336, 414, 1243, 1258
TseFI GTSAC 2 cut(s) 1084, 1238
TseI GCWGC 3 cut(s) 698, 893, 1370
Tsp45I GTSAC 2 cut(s) 1084, 1238
TspDTI ATGAA 7 cut(s) 27, 44, 48, 493, 505, 1065, 1200
TspGWI ACGGA 1 cut(s) 61
TspRI CASTG 4 cut(s) 336, 414, 1243, 1258
Vha464I CTTAAG 1 cut(s) 634
VpaK11BI GGWCC 3 cut(s) 275, 441, 927
XapI RAATTY 4 cut(s) 235, 341, 1036, 1200
XceI RCATGY 2 cut(s) 172, 211
XhoI CTCGAG 1 cut(s) 788
XmiI GTMKAC 1 cut(s) 1008
XspI CTAG 6 cut(s) 122, 590, 812, 959, 968, 1367
ZrmI AGTACT 2 cut(s) 1277, 1448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.