Rmu_sc0001251.1_g000010

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001251.1
OG0001605
Physical Location & Seq
Reverse (-)
24940 .. 26334
1395 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001251.1_g000010.1.cds

Sequence Viewer

Length: 1395 bp
atggcacgaaacgaagacatggcttccatgaatgtagctcctagtcggagcatcaaaatccttaaggagttctctaaggaggagttgttccaaaacatcaaggaagcagaagaaaggctagctcagcctcagtttcaaagctcaaaaccaaagatccaaagggttcccgacatgctccgagttcacccaaatttcgagaaatactatgagccaagggcagtagcaattggtccttaccatcataataaagcaagttgtcggctggcagagaagttcaagctcgcactggcagcaaaatttatcaacgaaagtggtggtcgagctgaagatttgcacaagatcattgaggacaacatcaacacactaaaggactgctatgatgaggaaccaacatggtcctacaccgacgaggccctcacacacttgttattcttagatgggtgttcaaccttacagttcatatactcgtttataaataatgagttagcagaattcaagatcaagtgggatcaggtggcttttgcagaacaggatttgttcttgctagaaaaccaactcccttaccaagtcctgaagttgttgatgagcaaaagtgacaaagcggaagagttgaagttcgcaatcgatgaatttgttggaaggaacatcatggaagcaaaaaaagggaaatggcacaaacacaaaagaacacgtcgagcaggaggtacgactataaacatggaagaagagcccactcatcttctcgagcttctccagataaaaatgctaggcagccccgaatatttccaccacaagaagatgaatcctgaagatggccgacgattattccgcaacataaaggagcttaaagaagcaggtatccatttaagatgtagtaagacaggcaccttgagggacatatcttttactcatcctctaggctttgtaggattcctatatcttccaccaatatcagtagacgactccatgaggatcaagttcttgaatttgatagcctatgaaatgtgtcctgatttctcccaaaatgacttggtggtcacctcttacatatacttcctgcgttcactgattgataatgcagaagatgttaaacagctaaggtcggcaggtgtactacgcaacttacttgggaatgatgaagaggtggctcaattttttaatgagataggtactgatttggtggctaaccccgaaacatacctcagtgtccgtgccggattaaataatcactggggaaccaagtggaaaaccaagttgaaagtctggatggctcaattctatcaggatcatttcagtagcccctggactatcatggcttcattgggtgttctagcagctctggggttaagcggcatccagacttggtacacaatacatcctccgaccactgcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

464

Amino Acids

53.54

Weight (kDa)

6.59

Isoelectric Point (pI)

45.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 473
AarI CACCTGC 1 cut(s) 1097
AasI GACNNNNNNGTC 1 cut(s) 1034
Acc36I ACCTGC 2 cut(s) 845, 1097
AccB1I GGYRCC 1 cut(s) 884
AccI GTMKAC 1 cut(s) 957
AciI CCGC 3 cut(s) 602, 829, 1350
AclWI GGATC 4 cut(s) 148, 516, 980, 1293
AcoI YGGCCR 1 cut(s) 814
AcsI RAATTY 5 cut(s) 190, 296, 491, 629, 985
AcuI CTGAAG 3 cut(s) 345, 593, 828
AfaI GTAC 4 cut(s) 706, 1113, 1171, 1367
AfiI CCNNNNNNNGG 1 cut(s) 812
AflII CTTAAG 1 cut(s) 62
AflIII ACRYGT 1 cut(s) 689
AgsI TTSAA 7 cut(s) 137, 277, 447, 496, 613, 985, 1258
AjiI CACGTC 1 cut(s) 692
AjnI CCWGG 1 cut(s) 1301
AloI GAACNNNNNNTCC 2 cut(s) 71, 103
AluBI AGCT 9 cut(s) 38, 122, 141, 280, 323, 748, 844, 1096, 1337
AluI AGCT 9 cut(s) 38, 122, 141, 280, 323, 748, 844, 1096, 1337
AlwI GGATC 4 cut(s) 148, 516, 980, 1293
Ama87I CYCGRG 1 cut(s) 743
AoxI GGCC 2 cut(s) 411, 814
ApeKI GCWGC 3 cut(s) 290, 771, 1334
ApoI RAATTY 5 cut(s) 190, 296, 491, 629, 985
AspS9I GGNCC 3 cut(s) 230, 396, 412
AsuHPI GGTGA 2 cut(s) 176, 1030
AsuNHI GCTAGC 1 cut(s) 118
AvaI CYCGRG 1 cut(s) 743
AvaII GGWCC 2 cut(s) 230, 396
BanI GGYRCC 1 cut(s) 884
BanII GRGCYC 1 cut(s) 732
BbsI GAAGAC 1 cut(s) 21
BbvI GCAGC 3 cut(s) 302, 783, 1346
BccI CCATC 4 cut(s) 246, 431, 806, 1261
BciT130I CCWGG 1 cut(s) 1303
BciVI GTATCC 1 cut(s) 869
BfaI CTAG 6 cut(s) 42, 119, 545, 767, 917, 1331
BfrI CTTAAG 1 cut(s) 62
BfuAI ACCTGC 2 cut(s) 845, 1097
BfuI GTATCC 1 cut(s) 869
BisI GCNGC 4 cut(s) 291, 772, 1335, 1351
BlpI GCTNAGC 1 cut(s) 123
BlsI GCNGC 4 cut(s) 292, 773, 1336, 1352
Bme1390I CCNGG 1 cut(s) 1303
Bme18I GGWCC 2 cut(s) 230, 396
BmeT110I CYCGRG 1 cut(s) 743
BmgBI CACGTC 1 cut(s) 692
BmgT120I GGNCC 3 cut(s) 230, 396, 412
BmiI GGNNCC 4 cut(s) 165, 387, 886, 1237
BmrFI CCNGG 1 cut(s) 1303
BmrI ACTGGG 1 cut(s) 1240
BmsI GCATC 2 cut(s) 60, 1362
BmtI GCTAGC 1 cut(s) 122
BmuI ACTGGG 1 cut(s) 1240
BpiI GAAGAC 1 cut(s) 21
BpmI CTGGAG 1 cut(s) 737
Bpu10I CCTNAGC 1 cut(s) 1097
Bpu1102I GCTNAGC 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 910
Bsa29I ATCGAT 1 cut(s) 624
BsaJI CCNNGG 2 cut(s) 212, 1301
BsaXI ACNNNNNCTCC 2 cut(s) 71, 101
Bsc4I CCNNNNNNNGG 1 cut(s) 812
Bse1I ACTGG 2 cut(s) 291, 1235
BseBI CCWGG 1 cut(s) 1303
BseCI ATCGAT 1 cut(s) 624
BseDI CCNNGG 2 cut(s) 212, 1301
BseGI GGATG 4 cut(s) 910, 1272, 1353, 1375
BseLI CCNNNNNNNGG 1 cut(s) 812
BseMII CTCAG 3 cut(s) 137, 143, 1216
BseNI ACTGG 2 cut(s) 291, 1235
BseRI GAGGAG 1 cut(s) 95
BseXI GCAGC 3 cut(s) 302, 783, 1346
BshFI GGCC 2 cut(s) 413, 816
BshNI GGYRCC 1 cut(s) 884
BshVI ATCGAT 1 cut(s) 624
BsiHKCI CYCGRG 1 cut(s) 743
BsiSI CCGG 1 cut(s) 1215
BslFI GGGAC 1 cut(s) 908
BslI CCNNNNNNNGG 1 cut(s) 812
BsmFI GGGAC 1 cut(s) 908
BsnI GGCC 2 cut(s) 413, 816
BsoBI CYCGRG 1 cut(s) 743
Bsp1286I GDGCHC 1 cut(s) 732
Bsp143I GATC 6 cut(s) 153, 339, 498, 508, 972, 1285
Bsp1720I GCTNAGC 1 cut(s) 123
BspACI CCGC 3 cut(s) 602, 829, 1350
BspANI GGCC 2 cut(s) 413, 816
BspCNI CTCAG 3 cut(s) 136, 142, 1215
BspDI ATCGAT 1 cut(s) 624
BspLI GGNNCC 4 cut(s) 165, 387, 886, 1237
BspMI ACCTGC 2 cut(s) 845, 1097
BspOI GCTAGC 1 cut(s) 122
BspPI GGATC 4 cut(s) 148, 516, 980, 1293
BspQI GCTCTTC 1 cut(s) 720
BspT107I GGYRCC 1 cut(s) 884
BspTI CTTAAG 1 cut(s) 62
BsrI ACTGG 2 cut(s) 291, 1235
BssECI CCNNGG 2 cut(s) 212, 1301
BssMI GATC 6 cut(s) 153, 339, 498, 508, 972, 1285
BssT1I CCWWGG 1 cut(s) 212
Bst2UI CCWGG 1 cut(s) 1303
Bst4CI ACNGT 1 cut(s) 456
Bst6I CTCTTC 3 cut(s) 600, 720, 1134
BstAFI CTTAAG 1 cut(s) 62
BstC8I GCNNGC 3 cut(s) 120, 264, 282
BstDEI CTNAG 6 cut(s) 75, 123, 129, 433, 1097, 1202
BstEII GGTNACC 1 cut(s) 1036
BstF5I GGATG 4 cut(s) 910, 1272, 1353, 1375
BstKTI GATC 6 cut(s) 156, 342, 501, 511, 975, 1288
BstMBI GATC 6 cut(s) 153, 339, 498, 508, 972, 1285
BstMWI GCNNNNNNNGC 2 cut(s) 124, 290
BstNI CCWGG 1 cut(s) 1303
BstNSI RCATGY 1 cut(s) 175
BstPI GGTNACC 1 cut(s) 1036
BstSCI CCNGG 1 cut(s) 1301
BstV1I GCAGC 3 cut(s) 302, 783, 1346
BstV2I GAAGAC 1 cut(s) 21
BstX2I RGATCY 1 cut(s) 153
BstYI RGATCY 1 cut(s) 153
Bsu15I ATCGAT 1 cut(s) 624
BsuI GTATCC 1 cut(s) 869
BsuRI GGCC 2 cut(s) 413, 816
BsuTUI ATCGAT 1 cut(s) 624
BtrI CACGTC 1 cut(s) 692
BtsCI GGATG 4 cut(s) 910, 1272, 1353, 1375
BtsI GCAGTG 1 cut(s) 1386
BtsIMutI CAGTG 5 cut(s) 284, 1064, 1210, 1228, 1386
BveI ACCTGC 2 cut(s) 845, 1097
Cac8I GCNNGC 3 cut(s) 120, 264, 282
Cfr13I GGNCC 3 cut(s) 230, 396, 412
ClaI ATCGAT 1 cut(s) 624
Csp6I GTAC 4 cut(s) 705, 1112, 1170, 1366
CspCI CAANNNNNGTGG 2 cut(s) 292, 327
CviAII CATG 8 cut(s) 19, 28, 172, 393, 649, 718, 967, 1312
CviQI GTAC 4 cut(s) 705, 1112, 1170, 1366
DdeI CTNAG 6 cut(s) 75, 123, 129, 433, 1097, 1202
DpnI GATC 6 cut(s) 155, 341, 500, 510, 974, 1287
DpnII GATC 6 cut(s) 153, 339, 498, 508, 972, 1285
DrdI GACNNNNNNGTC 1 cut(s) 1034
DseDI GACNNNNNNGTC 1 cut(s) 1034
EaeI YGGCCR 1 cut(s) 814
Eam1104I CTCTTC 3 cut(s) 600, 720, 1134
EarI CTCTTC 3 cut(s) 600, 720, 1134
Eco130I CCWWGG 1 cut(s) 212
Eco24I GRGCYC 1 cut(s) 732
Eco47I GGWCC 2 cut(s) 230, 396
Eco57I CTGAAG 3 cut(s) 345, 593, 828
Eco88I CYCGRG 1 cut(s) 743
Eco91I GGTNACC 1 cut(s) 1036
EcoO109I RGGNCCY 1 cut(s) 412
EcoO65I GGTNACC 1 cut(s) 1036
EcoRI GAATTC 1 cut(s) 491
EcoRII CCWGG 1 cut(s) 1301
EcoT14I CCWWGG 1 cut(s) 212
EcoT38I GRGCYC 1 cut(s) 732
ErhI CCWWGG 1 cut(s) 212
FaeI CATG 8 cut(s) 22, 31, 175, 396, 652, 721, 970, 1315
FaqI GGGAC 1 cut(s) 908
FatI CATG 8 cut(s) 18, 27, 171, 392, 648, 717, 966, 1311
FblI GTMKAC 1 cut(s) 957
Fnu4HI GCNGC 4 cut(s) 291, 772, 1335, 1351
FokI GGATG 4 cut(s) 897, 1279, 1340, 1362
FriOI GRGCYC 1 cut(s) 732
Fsp4HI GCNGC 4 cut(s) 291, 772, 1335, 1351
FspBI CTAG 6 cut(s) 42, 119, 545, 767, 917, 1331
GluI GCNGC 4 cut(s) 291, 772, 1335, 1351
GsuI CTGGAG 1 cut(s) 737
HaeIII GGCC 2 cut(s) 413, 816
HapII CCGG 1 cut(s) 1215
Hin1II CATG 8 cut(s) 22, 31, 175, 396, 652, 721, 970, 1315
HinfI GANTC 3 cut(s) 802, 930, 962
HpaII CCGG 1 cut(s) 1215
HphI GGTGA 2 cut(s) 176, 1030
Hpy166II GTNNAC 5 cut(s) 184, 958, 1064, 1112, 1368
Hpy188I TCNGA 3 cut(s) 48, 179, 1383
Hpy8I GTNNAC 5 cut(s) 184, 958, 1064, 1112, 1368
Hpy99I CGWCG 3 cut(s) 410, 696, 822
HpyAV CCTTC 1 cut(s) 633
HpyCH4III ACNGT 1 cut(s) 456
HpyCH4IV ACGT 1 cut(s) 691
HpyCH4V TGCA 3 cut(s) 334, 524, 1079
HpyF10VI GCNNNNNNNGC 2 cut(s) 124, 290
HpyF3I CTNAG 6 cut(s) 75, 123, 129, 433, 1097, 1202
HpySE526I ACGT 1 cut(s) 691
Hsp92II CATG 8 cut(s) 22, 31, 175, 396, 652, 721, 970, 1315
Kzo9I GATC 6 cut(s) 153, 339, 498, 508, 972, 1285
LguI GCTCTTC 1 cut(s) 720
LmnI GCTCC 4 cut(s) 43, 48, 180, 841
Lsp1109I GCAGC 3 cut(s) 302, 783, 1346
LweI GCATC 2 cut(s) 60, 1362
MaeI CTAG 6 cut(s) 42, 119, 545, 767, 917, 1331
MaeII ACGT 1 cut(s) 691
MaeIII GTNAC 2 cut(s) 593, 1036
MalI GATC 6 cut(s) 155, 341, 500, 510, 974, 1287
MboI GATC 6 cut(s) 153, 339, 498, 508, 972, 1285
MfeI CAATTG 1 cut(s) 225
MflI RGATCY 1 cut(s) 153
MhlI GDGCHC 1 cut(s) 732
MluCI AATT 8 cut(s) 190, 225, 296, 491, 629, 985, 1151, 1274
MlyI GAGTC 1 cut(s) 956
MmeI TCCRAC 2 cut(s) 26, 616
MseI TTAA 7 cut(s) 63, 846, 866, 1089, 1158, 1220, 1346
MspCI CTTAAG 1 cut(s) 62
MspI CCGG 1 cut(s) 1215
MspR9I CCNGG 1 cut(s) 1303
MunI CAATTG 1 cut(s) 225
MvaI CCWGG 1 cut(s) 1303
MwoI GCNNNNNNNGC 2 cut(s) 124, 290
NdeII GATC 6 cut(s) 153, 339, 498, 508, 972, 1285
NheI GCTAGC 1 cut(s) 118
NlaIII CATG 8 cut(s) 22, 31, 175, 396, 652, 721, 970, 1315
NlaIV GGNNCC 4 cut(s) 165, 387, 886, 1237
NmuCI GTSAC 2 cut(s) 593, 1036
NspI RCATGY 1 cut(s) 175
PaeR7I CTCGAG 1 cut(s) 743
PaqCI CACCTGC 1 cut(s) 1097
PciSI GCTCTTC 1 cut(s) 720
PfeI GAWTC 2 cut(s) 802, 930
PkrI GCNGC 4 cut(s) 292, 773, 1336, 1352
PleI GAGTC 1 cut(s) 956
PpsI GAGTC 1 cut(s) 956
PsiI TTATAA 1 cut(s) 473
Psp6I CCWGG 1 cut(s) 1301
PspEI GGTNACC 1 cut(s) 1036
PspGI CCWGG 1 cut(s) 1301
PspN4I GGNNCC 4 cut(s) 165, 387, 886, 1237
PspPI GGNCC 3 cut(s) 230, 396, 412
PsuI RGATCY 1 cut(s) 153
RsaI GTAC 4 cut(s) 706, 1113, 1171, 1367
RsaNI GTAC 4 cut(s) 705, 1112, 1170, 1366
SapI GCTCTTC 1 cut(s) 720
SaqAI TTAA 7 cut(s) 63, 846, 866, 1089, 1158, 1220, 1346
SatI GCNGC 4 cut(s) 291, 772, 1335, 1351
Sau3AI GATC 6 cut(s) 153, 339, 498, 508, 972, 1285
Sau96I GGNCC 3 cut(s) 230, 396, 412
SchI GAGTC 1 cut(s) 956
ScrFI CCNGG 1 cut(s) 1303
SduI GDGCHC 1 cut(s) 732
SfaNI GCATC 2 cut(s) 60, 1362
Sfr274I CTCGAG 1 cut(s) 743
SinI GGWCC 2 cut(s) 230, 396
SlaI CTCGAG 1 cut(s) 743
SmlI CTYRAG 3 cut(s) 62, 743, 889
SmoI CTYRAG 3 cut(s) 62, 743, 889
Sse9I AATT 8 cut(s) 190, 225, 296, 491, 629, 985, 1151, 1274
SsiI CCGC 3 cut(s) 602, 829, 1350
SspI AATATT 1 cut(s) 782
SspMI CTAG 6 cut(s) 42, 119, 545, 767, 917, 1331
StyD4I CCNGG 1 cut(s) 1301
StyI CCWWGG 1 cut(s) 212
TaaI ACNGT 1 cut(s) 456
TaiI ACGT 1 cut(s) 694
TaqI TCGA 5 cut(s) 195, 319, 624, 694, 744
TasI AATT 8 cut(s) 190, 225, 296, 491, 629, 985, 1151, 1274
TatI WGTACW 1 cut(s) 1111
TauI GCSGC 1 cut(s) 1353
TfiI GAWTC 2 cut(s) 802, 930
Tru1I TTAA 7 cut(s) 63, 846, 866, 1089, 1158, 1220, 1346
Tru9I TTAA 7 cut(s) 63, 846, 866, 1089, 1158, 1220, 1346
TscAI CASTG 5 cut(s) 291, 1071, 1210, 1235, 1393
TseFI GTSAC 2 cut(s) 593, 1036
TseI GCWGC 3 cut(s) 290, 771, 1334
Tsp45I GTSAC 2 cut(s) 593, 1036
TspDTI ATGAA 7 cut(s) 44, 448, 642, 815, 1014, 1152, 1308
TspGWI ACGGA 1 cut(s) 1199
TspRI CASTG 5 cut(s) 291, 1071, 1210, 1235, 1393
Vha464I CTTAAG 1 cut(s) 62
VpaK11BI GGWCC 2 cut(s) 230, 396
XapI RAATTY 5 cut(s) 190, 296, 491, 629, 985
XceI RCATGY 1 cut(s) 175
XhoI CTCGAG 1 cut(s) 743
XmiI GTMKAC 1 cut(s) 957
XspI CTAG 6 cut(s) 42, 119, 545, 767, 917, 1331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.