Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010311.1

Orthogroup ID

OG0001605

Physical Location & Seq

Genomic Coordinates Reverse (-)

32212 .. 33649

Gene Structure 1438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010311.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

atggcacgaaatgaagacttggcttccatgaatgaagctccagaacggagcatcacaatttatgacaagttatccaacaaggtggagttgttcaaagacataaaaggagcaaaagaaaagctagctcagtttcaaagttcaaaaccaaagatccaaagggttcccgacatgcttagagatcagtgtcaactggcagagaagttcaagcttgcactggcagaacaatttatcgaagacagcggccatcaagttgaagatttgcacaagatcattgaggacaacatcaacacactaaaggactgctatgatgaggaagcaacaaggtcctacaccaacaaggccatcacaaacttgttattcttagatggatgttcaaccttacagttcatatactccttcatggagaataagttagcaagtttcaacatcaagagagatcaggtggcttttgcagaacaggatttgttcttgctagaaaaccaactcccttaccaagtcctcaagctgttaatgagcttaagtgccaaagaggggaacttgaaggccgcaatcgatggatttgttggaaggaacatcatggcagcagaaaaaaaatggaaatggcacaaacacaaaaaaacgcgtcaaccaggagatagccccaaatctgacaaccccaagaagataaaatttgaagatggccgacaatcattccccaacatacaggagcttaaagcagcagggatccatttaaggcgtagtaagacagggaccttgagagacatgtcttttactcatcctctagggcttctaggctttgtaggattccaatatcttccaccaatatcagtagacgactccatgaggcctaagttcttgaatttgatagccgatgaaatgtgtcctgatttccaaaatgactttgatgtcacctcttacatatgcttcctcgattcactaattgatcatgcagatgatgttaaacagctaaggtcggcacgcgtactacacaacttacttggtagtgatgaagaggtggctcaaattttcaatgagataggtactggcttggtgcctaacagtgacatatacgtcagtgtcaaagttaaattagaaaagtactacaaaaccaagtggaaaacctggatggctcaattctgtcatgatcatttctgtagcccctggactatcctggctttccttggtgttctagcagctctggggttaagcggcatccagacttggtacacaatcaaatctcccccctctgcctgcgatgctgtatgcgagtacttgaagaaacagctgaaaatagagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

432

Amino Acids

49.37

Weight (kDa)

6.8

Isoelectric Point (pI)

45.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001605)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02910 FvH4_6g25140
malus_domestica	MD00G1049100.v1.1 MD02G1233700.v1.1 MD07G1070100.v1.1 MD12G1022100.v1.1
prunus_persica	Prupe.7G045600_v2.0.a1 Prupe.7G045700_v2.0.a1 Prupe.7G045800_v2.0.a1 Prupe.7G046000_v2.0.a1 Prupe.8G075900_v2.0.a1 Prupe.8G076000_v2.0.a1
pyrus_communis	pycom12g02050 pycom12g07700 pycom12g07720 pycom14g07350 pycom14g07360
rosa_chinensis	RchiOBHm_Chr2g0125011
rosa_laevigata	RLG00000009906 RLG00000018842
rosa_multiflora	Rmu_sc0000796.1_g000003 Rmu_sc0000796.1_g000022 Rmu_sc0000796.1_g000026 Rmu_sc0001251.1_g000010 Rmu_sc0001251.1_g000012 Rmu_sc0010311.1_g000001 Rmu_sc0010311.1_g000003 Rmu_sc0010311.1_g000008 Rmu_sc0010311.1_g000010
rosa_roxburghii	Rroxscaffold_2G00118310 Rroxscaffold_2G00118330 Rroxscaffold_2G00118420 Rroxscaffold_2G00118460 Rroxscaffold_2G00118760
rosa_rugosa	Rorug02G0254900
rosa_samantha	Rh2AG313200 Rh2AG313500 Rh2BG321400 Rh2BG321800 Rh2CG303200 Rh2CG303500 Rh2CG303900 Rh2CG304000 Rh2DG339200 Rh2DG339500 Rh2DG340000 Rh2DG340100
rosa_wichuraiana	Rw2G025320 Rw2G025330 Rw2G025360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	905, 1070
AccB1I	GGYRCC	1 cut(s)	1051
AccI	GTMKAC	1 cut(s)	831
AccII	CGCG	2 cut(s)	622, 981
AciI	CCGC	3 cut(s)	240, 546, 1209
AclWI	GGATC	3 cut(s)	145, 718, 731
AcoI	YGGCCR	2 cut(s)	241, 679
AcsI	RAATTY	3 cut(s)	668, 859, 1023
AfaI	GTAC	5 cut(s)	984, 1042, 1100, 1226, 1271
AfiI	CCNNNNNNNGG	1 cut(s)	531
AflII	CTTAAG	1 cut(s)	517
AflIII	ACRYGT	3 cut(s)	620, 762, 979
AjnI	CCWGG	4 cut(s)	628, 1121, 1160, 1170
Alw26I	GTCTC	1 cut(s)	753
AlwI	GGATC	3 cut(s)	145, 718, 731
AoxI	GGCC	5 cut(s)	241, 339, 543, 679, 845
ApeKI	GCWGC	3 cut(s)	581, 716, 1193
ApoI	RAATTY	3 cut(s)	668, 859, 1023
AspS9I	GGNCC	2 cut(s)	324, 750
AsuHPI	GGTGA	1 cut(s)	901
AsuNHI	GCTAGC	1 cut(s)	121
AvaII	GGWCC	2 cut(s)	324, 750
BamHI	GGATCC	1 cut(s)	723
BanI	GGYRCC	1 cut(s)	1051
BbsI	GAAGAC	2 cut(s)	21, 240
BbvI	GCAGC	3 cut(s)	593, 728, 1205
BccI	CCATC	6 cut(s)	252, 350, 359, 548, 671, 1120
BciT130I	CCWGG	4 cut(s)	630, 1123, 1162, 1172
BclI	TGATCA	2 cut(s)	943, 1144
BcoDI	GTCTC	1 cut(s)	753
BfaI	CTAG	5 cut(s)	122, 473, 782, 791, 1190
BfmI	CTRYAG	1 cut(s)	1153
BfrI	CTTAAG	1 cut(s)	517
BisI	GCNGC	6 cut(s)	241, 546, 582, 717, 1194, 1210
BlsI	GCNGC	6 cut(s)	242, 547, 583, 718, 1195, 1211
BmcAI	AGTACT	2 cut(s)	1100, 1271
Bme1390I	CCNGG	4 cut(s)	630, 1123, 1162, 1172
Bme18I	GGWCC	2 cut(s)	324, 750
BmgT120I	GGNCC	2 cut(s)	324, 750
BmiI	GGNNCC	4 cut(s)	162, 725, 751, 1053
BmrFI	CCNGG	4 cut(s)	630, 1123, 1162, 1172
BmsI	GCATC	3 cut(s)	60, 1221, 1246
BmtI	GCTAGC	1 cut(s)	125
BpiI	GAAGAC	2 cut(s)	21, 240
BpmI	CTGGAG	1 cut(s)	24
Bpu10I	CCTNAGC	1 cut(s)	968
BpuEI	CTTGAG	2 cut(s)	485, 775
Bsa29I	ATCGAT	1 cut(s)	552
BsaJI	CCNNGG	2 cut(s)	1160, 1180
BsaXI	ACNNNNNCTCC	2 cut(s)	395, 425
Bsc4I	CCNNNNNNNGG	1 cut(s)	531
Bse1I	ACTGG	3 cut(s)	195, 219, 1048
BseBI	CCWGG	4 cut(s)	630, 1123, 1162, 1172
BseCI	ATCGAT	1 cut(s)	552
BseDI	CCNNGG	2 cut(s)	1160, 1180
BseGI	GGATG	4 cut(s)	374, 775, 1131, 1212
BseLI	CCNNNNNNNGG	1 cut(s)	531
BseMII	CTCAG	1 cut(s)	140
BseNI	ACTGG	3 cut(s)	195, 219, 1048
BseXI	GCAGC	3 cut(s)	593, 728, 1205
Bsh1236I	CGCG	2 cut(s)	622, 981
BshFI	GGCC	5 cut(s)	243, 341, 545, 681, 847
BshNI	GGYRCC	1 cut(s)	1051
BshVI	ATCGAT	1 cut(s)	552
BslFI	GGGAC	1 cut(s)	763
BslI	CCNNNNNNNGG	1 cut(s)	531
BsmAI	GTCTC	1 cut(s)	753
BsmFI	GGGAC	1 cut(s)	763
BsnI	GGCC	5 cut(s)	243, 341, 545, 681, 847
Bsp143I	GATC	7 cut(s)	150, 178, 267, 436, 723, 943, 1144
BspACI	CCGC	3 cut(s)	240, 546, 1209
BspANI	GGCC	5 cut(s)	243, 341, 545, 681, 847
BspCNI	CTCAG	1 cut(s)	139
BspDI	ATCGAT	1 cut(s)	552
BspFNI	CGCG	2 cut(s)	622, 981
BspHI	TCATGA	1 cut(s)	1141
BspLI	GGNNCC	4 cut(s)	162, 725, 751, 1053
BspOI	GCTAGC	1 cut(s)	125
BspPI	GGATC	3 cut(s)	145, 718, 731
BspT107I	GGYRCC	1 cut(s)	1051
BspTI	CTTAAG	1 cut(s)	517
BsrI	ACTGG	3 cut(s)	195, 219, 1048
BssECI	CCNNGG	2 cut(s)	1160, 1180
BssMI	GATC	7 cut(s)	150, 178, 267, 436, 723, 943, 1144
BssT1I	CCWWGG	1 cut(s)	1180
Bst2UI	CCWGG	4 cut(s)	630, 1123, 1162, 1172
Bst4CI	ACNGT	2 cut(s)	384, 1061
Bst6I	CTCTTC	1 cut(s)	1005
BstAFI	CTTAAG	1 cut(s)	517
BstC8I	GCNNGC	4 cut(s)	123, 210, 979, 1252
BstDEI	CTNAG	5 cut(s)	126, 173, 361, 849, 968
BstF5I	GGATG	4 cut(s)	374, 775, 1131, 1212
BstFNI	CGCG	2 cut(s)	622, 981
BstKTI	GATC	7 cut(s)	153, 181, 270, 439, 726, 946, 1147
BstMAI	GTCTC	1 cut(s)	753
BstMBI	GATC	7 cut(s)	150, 178, 267, 436, 723, 943, 1144
BstMWI	GCNNNNNNNGC	1 cut(s)	1256
BstNI	CCWGG	4 cut(s)	630, 1123, 1162, 1172
BstNSI	RCATGY	2 cut(s)	172, 766
BstSCI	CCNGG	4 cut(s)	628, 1121, 1160, 1170
BstSFI	CTRYAG	1 cut(s)	1153
BstUI	CGCG	2 cut(s)	622, 981
BstV1I	GCAGC	3 cut(s)	593, 728, 1205
BstV2I	GAAGAC	2 cut(s)	21, 240
BstX2I	RGATCY	2 cut(s)	150, 723
BstXI	CCANNNNNNTGG	1 cut(s)	82
BstYI	RGATCY	2 cut(s)	150, 723
Bsu15I	ATCGAT	1 cut(s)	552
BsuRI	GGCC	5 cut(s)	243, 341, 545, 681, 847
BsuTUI	ATCGAT	1 cut(s)	552
BtgZI	GCGATG	1 cut(s)	1269
BtsCI	GGATG	4 cut(s)	374, 775, 1131, 1212
BtsIMutI	CAGTG	4 cut(s)	188, 212, 1066, 1081
Cac8I	GCNNGC	4 cut(s)	123, 210, 979, 1252
CciI	TCATGA	1 cut(s)	1141
Cfr13I	GGNCC	2 cut(s)	324, 750
ClaI	ATCGAT	1 cut(s)	552
CseI	GACGC	1 cut(s)	611
Csp6I	GTAC	5 cut(s)	983, 1041, 1099, 1225, 1270
CviAII	CATG	8 cut(s)	28, 169, 400, 577, 763, 841, 947, 1142
CviQI	GTAC	5 cut(s)	983, 1041, 1099, 1225, 1270
DdeI	CTNAG	5 cut(s)	126, 173, 361, 849, 968
DpnI	GATC	7 cut(s)	152, 180, 269, 438, 725, 945, 1146
DpnII	GATC	7 cut(s)	150, 178, 267, 436, 723, 943, 1144
DrdI	GACNNNNNNGTC	2 cut(s)	905, 1070
DseDI	GACNNNNNNGTC	2 cut(s)	905, 1070
EaeI	YGGCCR	2 cut(s)	241, 679
Eam1104I	CTCTTC	1 cut(s)	1005
EarI	CTCTTC	1 cut(s)	1005
Eco130I	CCWWGG	1 cut(s)	1180
Eco147I	AGGCCT	1 cut(s)	847
Eco47I	GGWCC	2 cut(s)	324, 750
EcoO109I	RGGNCCY	2 cut(s)	324, 750
EcoRII	CCWGG	4 cut(s)	628, 1121, 1160, 1170
EcoT14I	CCWWGG	1 cut(s)	1180
ErhI	CCWWGG	1 cut(s)	1180
FaeI	CATG	8 cut(s)	31, 172, 403, 580, 766, 844, 950, 1145
FaqI	GGGAC	1 cut(s)	763
FatI	CATG	8 cut(s)	27, 168, 399, 576, 762, 840, 946, 1141
FauNDI	CATATG	1 cut(s)	920
FbaI	TGATCA	2 cut(s)	943, 1144
FblI	GTMKAC	1 cut(s)	831
Fnu4HI	GCNGC	6 cut(s)	241, 546, 582, 717, 1194, 1210
FokI	GGATG	4 cut(s)	381, 762, 1138, 1199
Fsp4HI	GCNGC	6 cut(s)	241, 546, 582, 717, 1194, 1210
FspBI	CTAG	5 cut(s)	122, 473, 782, 791, 1190
GluI	GCNGC	6 cut(s)	241, 546, 582, 717, 1194, 1210
GsuI	CTGGAG	1 cut(s)	24
HaeIII	GGCC	5 cut(s)	243, 341, 545, 681, 847
HgaI	GACGC	1 cut(s)	611
Hin1II	CATG	8 cut(s)	31, 172, 403, 580, 766, 844, 950, 1145
HincII	GTYRAC	2 cut(s)	188, 626
HindII	GTYRAC	2 cut(s)	188, 626
HindIII	AAGCTT	1 cut(s)	206
HinfI	GANTC	3 cut(s)	804, 836, 932
HphI	GGTGA	1 cut(s)	901
Hpy166II	GTNNAC	4 cut(s)	188, 626, 832, 1227
Hpy188I	TCNGA	1 cut(s)	649
Hpy188III	TCNNGA	7 cut(s)	41, 164, 430, 856, 884, 1142, 1216
Hpy8I	GTNNAC	4 cut(s)	188, 626, 832, 1227
HpyAV	CCTTC	3 cut(s)	406, 535, 561
HpyCH4III	ACNGT	2 cut(s)	384, 1061
HpyCH4IV	ACGT	1 cut(s)	1071
HpyCH4V	TGCA	4 cut(s)	212, 262, 452, 950
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1256
HpyF3I	CTNAG	5 cut(s)	126, 173, 361, 849, 968
HpySE526I	ACGT	1 cut(s)	1071
Hsp92II	CATG	8 cut(s)	31, 172, 403, 580, 766, 844, 950, 1145
Ksp22I	TGATCA	2 cut(s)	943, 1144
Kzo9I	GATC	7 cut(s)	150, 178, 267, 436, 723, 943, 1144
LmnI	GCTCC	4 cut(s)	43, 48, 107, 706
Lsp1109I	GCAGC	3 cut(s)	593, 728, 1205
LweI	GCATC	3 cut(s)	60, 1221, 1246
MaeI	CTAG	5 cut(s)	122, 473, 782, 791, 1190
MaeII	ACGT	1 cut(s)	1071
MaeIII	GTNAC	2 cut(s)	907, 1061
MalI	GATC	7 cut(s)	152, 180, 269, 438, 725, 945, 1146
MboI	GATC	7 cut(s)	150, 178, 267, 436, 723, 943, 1144
MboII	GAAGA	8 cut(s)	26, 245, 266, 673, 686, 806, 1022, 1288
MflI	RGATCY	2 cut(s)	150, 723
MluCI	AATT	8 cut(s)	57, 224, 668, 859, 939, 1023, 1088, 1133
MluI	ACGCGT	2 cut(s)	620, 979
MlyI	GAGTC	1 cut(s)	830
MmeI	TCCRAC	2 cut(s)	99, 544
MseI	TTAA	7 cut(s)	509, 518, 711, 731, 960, 1086, 1205
MslI	CAYNNNNRTG	1 cut(s)	951
MspA1I	CMGCKG	2 cut(s)	240, 1285
MspCI	CTTAAG	1 cut(s)	517
MspR9I	CCNGG	4 cut(s)	630, 1123, 1162, 1172
MvaI	CCWGG	4 cut(s)	630, 1123, 1162, 1172
MvnI	CGCG	2 cut(s)	622, 981
MwoI	GCNNNNNNNGC	1 cut(s)	1256
NdeI	CATATG	1 cut(s)	920
NdeII	GATC	7 cut(s)	150, 178, 267, 436, 723, 943, 1144
NheI	GCTAGC	1 cut(s)	121
NlaIII	CATG	8 cut(s)	31, 172, 403, 580, 766, 844, 950, 1145
NlaIV	GGNNCC	4 cut(s)	162, 725, 751, 1053
NmuCI	GTSAC	2 cut(s)	907, 1061
NspI	RCATGY	2 cut(s)	172, 766
PagI	TCATGA	1 cut(s)	1141
PceI	AGGCCT	1 cut(s)	847
PciI	ACATGT	1 cut(s)	762
PfeI	GAWTC	2 cut(s)	804, 932
PkrI	GCNGC	6 cut(s)	242, 547, 583, 718, 1195, 1211
PleI	GAGTC	1 cut(s)	830
PpsI	GAGTC	1 cut(s)	830
PpuMI	RGGWCCY	2 cut(s)	324, 750
PscI	ACATGT	1 cut(s)	762
Psp5II	RGGWCCY	2 cut(s)	324, 750
Psp6I	CCWGG	4 cut(s)	628, 1121, 1160, 1170
PspGI	CCWGG	4 cut(s)	628, 1121, 1160, 1170
PspN4I	GGNNCC	4 cut(s)	162, 725, 751, 1053
PspPI	GGNCC	2 cut(s)	324, 750
PspPPI	RGGWCCY	2 cut(s)	324, 750
PsuI	RGATCY	2 cut(s)	150, 723
PvuII	CAGCTG	1 cut(s)	1285
RsaI	GTAC	5 cut(s)	984, 1042, 1100, 1226, 1271
RsaNI	GTAC	5 cut(s)	983, 1041, 1099, 1225, 1270
RseI	CAYNNNNRTG	1 cut(s)	951
SaqAI	TTAA	7 cut(s)	509, 518, 711, 731, 960, 1086, 1205
SatI	GCNGC	6 cut(s)	241, 546, 582, 717, 1194, 1210
Sau3AI	GATC	7 cut(s)	150, 178, 267, 436, 723, 943, 1144
Sau96I	GGNCC	2 cut(s)	324, 750
ScaI	AGTACT	2 cut(s)	1100, 1271
SchI	GAGTC	1 cut(s)	830
ScrFI	CCNGG	4 cut(s)	630, 1123, 1162, 1172
SfaNI	GCATC	3 cut(s)	60, 1221, 1246
SfcI	CTRYAG	1 cut(s)	1153
SinI	GGWCC	2 cut(s)	324, 750
SmiMI	CAYNNNNRTG	1 cut(s)	951
SmlI	CTYRAG	3 cut(s)	500, 517, 754
SmoI	CTYRAG	3 cut(s)	500, 517, 754
Sse9I	AATT	8 cut(s)	57, 224, 668, 859, 939, 1023, 1088, 1133
SseBI	AGGCCT	1 cut(s)	847
SsiI	CCGC	3 cut(s)	240, 546, 1209
SspMI	CTAG	5 cut(s)	122, 473, 782, 791, 1190
StuI	AGGCCT	1 cut(s)	847
StyD4I	CCNGG	4 cut(s)	628, 1121, 1160, 1170
StyI	CCWWGG	1 cut(s)	1180
TaaI	ACNGT	2 cut(s)	384, 1061
TaiI	ACGT	1 cut(s)	1074
TaqI	TCGA	3 cut(s)	231, 552, 930
TasI	AATT	8 cut(s)	57, 224, 668, 859, 939, 1023, 1088, 1133
TatI	WGTACW	2 cut(s)	1098, 1269
TauI	GCSGC	3 cut(s)	243, 548, 1212
TfiI	GAWTC	2 cut(s)	804, 932
Tru1I	TTAA	7 cut(s)	509, 518, 711, 731, 960, 1086, 1205
Tru9I	TTAA	7 cut(s)	509, 518, 711, 731, 960, 1086, 1205
TscAI	CASTG	4 cut(s)	188, 219, 1066, 1081
TseFI	GTSAC	2 cut(s)	907, 1061
TseI	GCWGC	3 cut(s)	581, 716, 1193
Tsp45I	GTSAC	2 cut(s)	907, 1061
TspDTI	ATGAA	7 cut(s)	27, 44, 48, 376, 388, 888, 1023
TspGWI	ACGGA	1 cut(s)	61
TspRI	CASTG	4 cut(s)	188, 219, 1066, 1081
Vha464I	CTTAAG	1 cut(s)	517
VpaK11BI	GGWCC	2 cut(s)	324, 750
XapI	RAATTY	3 cut(s)	668, 859, 1023
XceI	RCATGY	2 cut(s)	172, 766
XmiI	GTMKAC	1 cut(s)	831
XspI	CTAG	5 cut(s)	122, 473, 782, 791, 1190
ZrmI	AGTACT	2 cut(s)	1100, 1271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.