Rmu_sc0010311.1_g000003

UPF0481 protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010311.1
Physical Location & Seq
Reverse (-)
8090 .. 9487
1398 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010311.1_g000003.1.cds

Sequence Viewer

Length: 1398 bp
atggcacgaaacgaagacatgacttccatgaatgaagctccaagtcggagcatcacaagccttgaacagtcatctaaggagaagttgttcaaaaacataaaggaagcagaagaaatgctagatcagcttcagtctcaaagctcaaaaccaaagatccaaagggttcctgacatgctccgagatcaccgaaagtctgagaaatactatgagccaagggcagtagcaattggtcctttccatcataataaagcaaggtgtcagctggcagagaagttcaagcctgcactggcagcaaaatttatcaaagaaagtggccgtcaagctgaatatttgcacaaggtcattgaggacaacatcagcacactaaaggactgctacaatgaggaagcaacaaggtcctacaccgacgaggccctcgcagacttgttattcttagatggatgttcaaccctacagttcatatactcctttacgcaccagcagttagcaaatttcaagatcaagatagatcaggttgcttttgcagaacaagatttgttcttgctagaaaaccaactcccttaccaagtcctcgagttgctgatgcaggaaagtgataaaaaggaggacttgaagaccgcaatcgatgattttgttagagagacagcagacaaaaatccaaaaaggcgccaatacaaaagaacacgtccaccaggagataaatctataaacatgcaagagccgcccactcatcttttagagcttctccggacagaaatgctaggtcatcctgaccccgaaatgctaggtcatcctgaccccctcaaggaccccaaaaacacagaacctcaagattgccggcaatcattccgcaacatacaggagcttaaagcagcagggatccatttaaagcctagtaagggaagaaccttgagggacatatcttttaaatctctaggctttctaggattcctaaatcttccaccaatatcggtagatgactccatgaggcccaagttcttgaatttgatagcctatgagatgtgtcctgatttccaaaatgactttggggtcacctcttacatatgcttcctggattcactgattgatcatgcagatgatgttaaacagctaaggaaggcacgcatactacacaacttacttgggagtgatgaagaggtggctaaacttttcaataagataggtactgatttggtgcctaacagtaaaacatacctcggtgtcaaagtcgaattagaaaggcactacaaaaacatgtggaaaacctggatggctcaattctgtcacgatcatttcagtagcccctggactatcctggctttccttggtgttctagcagctctagggttaagtggcatccagacctggtacacaatcaattctccctcctcttcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

465

Amino Acids

53.48

Weight (kDa)

6.42

Isoelectric Point (pI)

44.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1049
AccB1I GGYRCC 2 cut(s) 666, 1195
AccIII TCCGGA 1 cut(s) 747
AciI CCGC 3 cut(s) 618, 722, 850
AclWI GGATC 3 cut(s) 148, 874, 887
AcoI YGGCCR 1 cut(s) 313
AcsI RAATTY 3 cut(s) 296, 490, 1003
AcuI CTGAAG 1 cut(s) 113
AcyI GRCGYC 1 cut(s) 667
AfaI GTAC 2 cut(s) 1186, 1370
AfiI CCNNNNNNNGG 2 cut(s) 805, 899
AflIII ACRYGT 2 cut(s) 683, 1254
AgsI TTSAA 8 cut(s) 65, 91, 277, 447, 496, 613, 1003, 1174
AjiI CACGTC 1 cut(s) 686
AjnI CCWGG 6 cut(s) 691, 1071, 1265, 1304, 1314, 1364
AloI GAACNNNNNNTCC 2 cut(s) 71, 103
AluBI AGCT 9 cut(s) 38, 127, 141, 262, 323, 742, 865, 1111, 1340
AluI AGCT 9 cut(s) 38, 127, 141, 262, 323, 742, 865, 1111, 1340
Alw26I GTCTC 2 cut(s) 138, 635
AlwI GGATC 3 cut(s) 148, 874, 887
Ama87I CYCGRG 1 cut(s) 572
Aor13HI TCCGGA 1 cut(s) 747
AoxI GGCC 3 cut(s) 313, 411, 989
ApeKI GCWGC 3 cut(s) 290, 872, 1337
ApoI RAATTY 3 cut(s) 296, 490, 1003
Asp700I GAANNNNTTC 1 cut(s) 86
AspLEI GCGC 1 cut(s) 669
AspS9I GGNCC 5 cut(s) 230, 396, 412, 808, 990
AsuHPI GGTGA 2 cut(s) 176, 1045
AvaI CYCGRG 1 cut(s) 572
AvaII GGWCC 3 cut(s) 230, 396, 808
BamHI GGATCC 1 cut(s) 879
BanI GGYRCC 2 cut(s) 666, 1195
BbsI GAAGAC 2 cut(s) 21, 620
BbvI GCAGC 3 cut(s) 302, 884, 1349
BccI CCATC 3 cut(s) 246, 431, 1264
BceAI ACGGC 1 cut(s) 300
BciT130I CCWGG 6 cut(s) 693, 1073, 1267, 1306, 1316, 1366
BclI TGATCA 1 cut(s) 1087
BcoDI GTCTC 2 cut(s) 138, 635
BfaI CTAG 9 cut(s) 119, 545, 761, 785, 894, 935, 944, 1334, 1343
BfmI CTRYAG 1 cut(s) 452
BfoI RGCGCY 1 cut(s) 670
BisI GCNGC 4 cut(s) 291, 722, 873, 1338
BlsI GCNGC 4 cut(s) 292, 723, 874, 1339
Bme1390I CCNGG 6 cut(s) 693, 1073, 1267, 1306, 1316, 1366
Bme18I GGWCC 3 cut(s) 230, 396, 808
BmeT110I CYCGRG 1 cut(s) 572
BmgBI CACGTC 1 cut(s) 686
BmgT120I GGNCC 5 cut(s) 230, 396, 412, 808, 990
BmiI GGNNCC 5 cut(s) 165, 668, 810, 881, 1197
BmrFI CCNGG 6 cut(s) 693, 1073, 1267, 1306, 1316, 1366
BmsI GCATC 3 cut(s) 60, 573, 1365
BpiI GAAGAC 2 cut(s) 21, 620
Bpu10I CCTNAGC 1 cut(s) 1112
BpuEI CTTGAG 3 cut(s) 788, 813, 931
Bsa29I ATCGAT 1 cut(s) 624
BsaHI GRCGYC 1 cut(s) 667
BsaJI CCNNGG 4 cut(s) 212, 1216, 1304, 1324
BsaWI WCCGGW 1 cut(s) 747
BsaXI ACNNNNNCTCC 2 cut(s) 71, 101
Bsc4I CCNNNNNNNGG 2 cut(s) 805, 899
Bse118I RCCGGY 1 cut(s) 837
Bse1I ACTGG 1 cut(s) 291
BseAI TCCGGA 1 cut(s) 747
BseBI CCWGG 6 cut(s) 693, 1073, 1267, 1306, 1316, 1366
BseCI ATCGAT 1 cut(s) 624
BseDI CCNNGG 4 cut(s) 212, 1216, 1304, 1324
BseGI GGATG 5 cut(s) 446, 766, 790, 1275, 1356
BseLI CCNNNNNNNGG 2 cut(s) 805, 899
BseMII CTCAG 1 cut(s) 186
BseNI ACTGG 1 cut(s) 291
BseRI GAGGAG 1 cut(s) 1378
BseXI GCAGC 3 cut(s) 302, 884, 1349
BsgI GTGCAG 1 cut(s) 267
BshFI GGCC 3 cut(s) 315, 413, 991
BshNI GGYRCC 2 cut(s) 666, 1195
BshVI ATCGAT 1 cut(s) 624
BsiHKCI CYCGRG 1 cut(s) 572
BsiSI CCGG 2 cut(s) 748, 838
BslFI GGGAC 1 cut(s) 929
BslI CCNNNNNNNGG 2 cut(s) 805, 899
BsmAI GTCTC 2 cut(s) 138, 635
BsmFI GGGAC 1 cut(s) 929
BsnI GGCC 3 cut(s) 315, 413, 991
BsoBI CYCGRG 1 cut(s) 572
Bsp13I TCCGGA 1 cut(s) 747
Bsp143I GATC 8 cut(s) 121, 153, 181, 498, 508, 879, 1087, 1288
BspACI CCGC 3 cut(s) 618, 722, 850
BspANI GGCC 3 cut(s) 315, 413, 991
BspCNI CTCAG 1 cut(s) 187
BspDI ATCGAT 1 cut(s) 624
BspEI TCCGGA 1 cut(s) 747
BspLI GGNNCC 5 cut(s) 165, 668, 810, 881, 1197
BspPI GGATC 3 cut(s) 148, 874, 887
BspT107I GGYRCC 2 cut(s) 666, 1195
BsrFI RCCGGY 1 cut(s) 837
BsrI ACTGG 1 cut(s) 291
BssAI RCCGGY 1 cut(s) 837
BssECI CCNNGG 4 cut(s) 212, 1216, 1304, 1324
BssMI GATC 8 cut(s) 121, 153, 181, 498, 508, 879, 1087, 1288
BssNI GRCGYC 1 cut(s) 667
BssT1I CCWWGG 2 cut(s) 212, 1324
Bst2UI CCWGG 6 cut(s) 693, 1073, 1267, 1306, 1316, 1366
Bst4CI ACNGT 3 cut(s) 69, 456, 1205
Bst6I CTCTTC 1 cut(s) 1149
BstACI GRCGYC 1 cut(s) 667
BstC8I GCNNGC 4 cut(s) 264, 282, 839, 1123
BstDEI CTNAG 4 cut(s) 75, 195, 433, 1112
BstEII GGTNACC 1 cut(s) 1051
BstF5I GGATG 5 cut(s) 446, 766, 790, 1275, 1356
BstH2I RGCGCY 1 cut(s) 670
BstHHI GCGC 1 cut(s) 669
BstKTI GATC 8 cut(s) 124, 156, 184, 501, 511, 882, 1090, 1291
BstMAI GTCTC 2 cut(s) 138, 635
BstMBI GATC 8 cut(s) 121, 153, 181, 498, 508, 879, 1087, 1288
BstMWI GCNNNNNNNGC 4 cut(s) 57, 124, 290, 721
BstNI CCWGG 6 cut(s) 693, 1073, 1267, 1306, 1316, 1366
BstNSI RCATGY 3 cut(s) 175, 715, 1258
BstPI GGTNACC 1 cut(s) 1051
BstSCI CCNGG 6 cut(s) 691, 1071, 1265, 1304, 1314, 1364
BstSFI CTRYAG 1 cut(s) 452
BstV1I GCAGC 3 cut(s) 302, 884, 1349
BstV2I GAAGAC 2 cut(s) 21, 620
BstX2I RGATCY 2 cut(s) 153, 879
BstYI RGATCY 2 cut(s) 153, 879
Bsu15I ATCGAT 1 cut(s) 624
BsuRI GGCC 3 cut(s) 315, 413, 991
BsuTUI ATCGAT 1 cut(s) 624
BtrI CACGTC 1 cut(s) 686
BtsCI GGATG 5 cut(s) 446, 766, 790, 1275, 1356
BtsIMutI CAGTG 2 cut(s) 284, 1079
Cac8I GCNNGC 4 cut(s) 264, 282, 839, 1123
CfoI GCGC 1 cut(s) 669
Cfr10I RCCGGY 1 cut(s) 837
Cfr13I GGNCC 5 cut(s) 230, 396, 412, 808, 990
ClaI ATCGAT 1 cut(s) 624
CsiI ACCWGGT 1 cut(s) 1364
Csp6I GTAC 2 cut(s) 1185, 1369
CspCI CAANNNNNGTGG 2 cut(s) 292, 327
CviAII CATG 7 cut(s) 19, 28, 172, 712, 985, 1091, 1255
CviQI GTAC 2 cut(s) 1185, 1369
DdeI CTNAG 4 cut(s) 75, 195, 433, 1112
DinI GGCGCC 1 cut(s) 668
DpnI GATC 8 cut(s) 123, 155, 183, 500, 510, 881, 1089, 1290
DpnII GATC 8 cut(s) 121, 153, 181, 498, 508, 879, 1087, 1288
DraI TTTAAA 2 cut(s) 888, 928
DrdI GACNNNNNNGTC 1 cut(s) 1049
DseDI GACNNNNNNGTC 1 cut(s) 1049
EaeI YGGCCR 1 cut(s) 313
Eam1104I CTCTTC 1 cut(s) 1149
EarI CTCTTC 1 cut(s) 1149
Eco130I CCWWGG 2 cut(s) 212, 1324
Eco47I GGWCC 3 cut(s) 230, 396, 808
Eco57I CTGAAG 1 cut(s) 113
Eco88I CYCGRG 1 cut(s) 572
Eco91I GGTNACC 1 cut(s) 1051
EcoO109I RGGNCCY 3 cut(s) 396, 412, 808
EcoO65I GGTNACC 1 cut(s) 1051
EcoRII CCWGG 6 cut(s) 691, 1071, 1265, 1304, 1314, 1364
EcoT14I CCWWGG 2 cut(s) 212, 1324
EgeI GGCGCC 1 cut(s) 668
EheI GGCGCC 1 cut(s) 668
ErhI CCWWGG 2 cut(s) 212, 1324
FaeI CATG 7 cut(s) 22, 31, 175, 715, 988, 1094, 1258
FalI AAGNNNNNCTT 2 cut(s) 593, 625
FaqI GGGAC 1 cut(s) 929
FatI CATG 7 cut(s) 18, 27, 171, 711, 984, 1090, 1254
FauNDI CATATG 1 cut(s) 1064
FbaI TGATCA 1 cut(s) 1087
Fnu4HI GCNGC 4 cut(s) 291, 722, 873, 1338
FokI GGATG 5 cut(s) 453, 753, 777, 1282, 1343
Fsp4HI GCNGC 4 cut(s) 291, 722, 873, 1338
FspBI CTAG 9 cut(s) 119, 545, 761, 785, 894, 935, 944, 1334, 1343
GlaI GCGC 1 cut(s) 668
GluI GCNGC 4 cut(s) 291, 722, 873, 1338
HaeII RGCGCY 1 cut(s) 670
HaeIII GGCC 3 cut(s) 315, 413, 991
HapII CCGG 2 cut(s) 748, 838
HhaI GCGC 1 cut(s) 669
Hin1I GRCGYC 1 cut(s) 667
Hin1II CATG 7 cut(s) 22, 31, 175, 715, 988, 1094, 1258
Hin6I GCGC 1 cut(s) 667
HinP1I GCGC 1 cut(s) 667
HinfI GANTC 3 cut(s) 948, 980, 1076
HpaII CCGG 2 cut(s) 748, 838
HphI GGTGA 2 cut(s) 176, 1045
Hpy166II GTNNAC 2 cut(s) 689, 1371
Hpy188I TCNGA 3 cut(s) 48, 179, 196
Hpy8I GTNNAC 2 cut(s) 689, 1371
Hpy99I CGWCG 1 cut(s) 410
HpyAV CCTTC 1 cut(s) 1111
HpyCH4III ACNGT 3 cut(s) 69, 456, 1205
HpyCH4IV ACGT 1 cut(s) 685
HpyCH4V TGCA 6 cut(s) 284, 334, 524, 586, 715, 1094
HpyF10VI GCNNNNNNNGC 4 cut(s) 57, 124, 290, 721
HpyF3I CTNAG 4 cut(s) 75, 195, 433, 1112
HpySE526I ACGT 1 cut(s) 685
Hsp92I GRCGYC 1 cut(s) 667
Hsp92II CATG 7 cut(s) 22, 31, 175, 715, 988, 1094, 1258
HspAI GCGC 1 cut(s) 667
KasI GGCGCC 1 cut(s) 666
Kpn2I TCCGGA 1 cut(s) 747
KroI GCCGGC 1 cut(s) 837
KroNI GCCGGC 1 cut(s) 839
Ksp22I TGATCA 1 cut(s) 1087
Kzo9I GATC 8 cut(s) 121, 153, 181, 498, 508, 879, 1087, 1288
LmnI GCTCC 4 cut(s) 43, 48, 180, 862
Lsp1109I GCAGC 3 cut(s) 302, 884, 1349
LweI GCATC 3 cut(s) 60, 573, 1365
MabI ACCWGGT 1 cut(s) 1364
MaeI CTAG 9 cut(s) 119, 545, 761, 785, 894, 935, 944, 1334, 1343
MaeII ACGT 1 cut(s) 685
MaeIII GTNAC 2 cut(s) 1051, 1283
MalI GATC 8 cut(s) 123, 155, 183, 500, 510, 881, 1089, 1290
MboI GATC 8 cut(s) 121, 153, 181, 498, 508, 879, 1087, 1288
MboII GAAGA 7 cut(s) 26, 122, 625, 915, 950, 1166, 1383
MfeI CAATTG 1 cut(s) 225
MflI RGATCY 2 cut(s) 153, 879
MluCI AATT 7 cut(s) 225, 296, 490, 1003, 1232, 1277, 1378
Mly113I GGCGCC 1 cut(s) 667
MlyI GAGTC 1 cut(s) 974
MmeI TCCRAC 1 cut(s) 26
MroI TCCGGA 1 cut(s) 747
MroNI GCCGGC 1 cut(s) 837
MroXI GAANNNNTTC 1 cut(s) 86
MseI TTAA 5 cut(s) 867, 887, 927, 1104, 1349
MslI CAYNNNNRTG 1 cut(s) 1095
MspA1I CMGCKG 1 cut(s) 262
MspI CCGG 2 cut(s) 748, 838
MspR9I CCNGG 6 cut(s) 693, 1073, 1267, 1306, 1316, 1366
MunI CAATTG 1 cut(s) 225
MvaI CCWGG 6 cut(s) 693, 1073, 1267, 1306, 1316, 1366
MwoI GCNNNNNNNGC 4 cut(s) 57, 124, 290, 721
NaeI GCCGGC 1 cut(s) 839
NarI GGCGCC 1 cut(s) 667
NdeI CATATG 1 cut(s) 1064
NdeII GATC 8 cut(s) 121, 153, 181, 498, 508, 879, 1087, 1288
NgoMIV GCCGGC 1 cut(s) 837
NlaIII CATG 7 cut(s) 22, 31, 175, 715, 988, 1094, 1258
NlaIV GGNNCC 5 cut(s) 165, 668, 810, 881, 1197
NmuCI GTSAC 2 cut(s) 1051, 1283
NspI RCATGY 3 cut(s) 175, 715, 1258
PaeR7I CTCGAG 1 cut(s) 572
PciI ACATGT 1 cut(s) 1254
PdiI GCCGGC 1 cut(s) 839
PdmI GAANNNNTTC 1 cut(s) 86
PfeI GAWTC 2 cut(s) 948, 1076
PfoI TCCNGGA 1 cut(s) 1071
PkrI GCNGC 4 cut(s) 292, 723, 874, 1339
PleI GAGTC 1 cut(s) 974
PluTI GGCGCC 1 cut(s) 670
PpsI GAGTC 1 cut(s) 974
PpuMI RGGWCCY 2 cut(s) 396, 808
PscI ACATGT 1 cut(s) 1254
Psp5II RGGWCCY 2 cut(s) 396, 808
Psp6I CCWGG 6 cut(s) 691, 1071, 1265, 1304, 1314, 1364
PspEI GGTNACC 1 cut(s) 1051
PspGI CCWGG 6 cut(s) 691, 1071, 1265, 1304, 1314, 1364
PspN4I GGNNCC 5 cut(s) 165, 668, 810, 881, 1197
PspPI GGNCC 5 cut(s) 230, 396, 412, 808, 990
PspPPI RGGWCCY 2 cut(s) 396, 808
PspXI VCTCGAGB 1 cut(s) 572
PsuI RGATCY 2 cut(s) 153, 879
PvuII CAGCTG 1 cut(s) 262
RsaI GTAC 2 cut(s) 1186, 1370
RsaNI GTAC 2 cut(s) 1185, 1369
RseI CAYNNNNRTG 1 cut(s) 1095
SaqAI TTAA 5 cut(s) 867, 887, 927, 1104, 1349
SatI GCNGC 4 cut(s) 291, 722, 873, 1338
Sau3AI GATC 8 cut(s) 121, 153, 181, 498, 508, 879, 1087, 1288
Sau96I GGNCC 5 cut(s) 230, 396, 412, 808, 990
SchI GAGTC 1 cut(s) 974
ScrFI CCNGG 6 cut(s) 693, 1073, 1267, 1306, 1316, 1366
SexAI ACCWGGT 1 cut(s) 1364
SfaNI GCATC 3 cut(s) 60, 573, 1365
SfcI CTRYAG 1 cut(s) 452
SfoI GGCGCC 1 cut(s) 668
Sfr274I CTCGAG 1 cut(s) 572
SinI GGWCC 3 cut(s) 230, 396, 808
SlaI CTCGAG 1 cut(s) 572
SmiMI CAYNNNNRTG 1 cut(s) 1095
SmlI CTYRAG 4 cut(s) 572, 803, 828, 910
SmoI CTYRAG 4 cut(s) 572, 803, 828, 910
Sse9I AATT 7 cut(s) 225, 296, 490, 1003, 1232, 1277, 1378
SsiI CCGC 3 cut(s) 618, 722, 850
SspDI GGCGCC 1 cut(s) 666
SspI AATATT 1 cut(s) 329
SspMI CTAG 9 cut(s) 119, 545, 761, 785, 894, 935, 944, 1334, 1343
StyD4I CCNGG 6 cut(s) 691, 1071, 1265, 1304, 1314, 1364
StyI CCWWGG 2 cut(s) 212, 1324
TaaI ACNGT 3 cut(s) 69, 456, 1205
TaiI ACGT 1 cut(s) 688
TaqI TCGA 3 cut(s) 573, 624, 1230
TasI AATT 7 cut(s) 225, 296, 490, 1003, 1232, 1277, 1378
TauI GCSGC 1 cut(s) 724
TfiI GAWTC 2 cut(s) 948, 1076
Tru1I TTAA 5 cut(s) 867, 887, 927, 1104, 1349
Tru9I TTAA 5 cut(s) 867, 887, 927, 1104, 1349
TscAI CASTG 2 cut(s) 291, 1086
TseFI GTSAC 2 cut(s) 1051, 1283
TseI GCWGC 3 cut(s) 290, 872, 1337
Tsp45I GTSAC 2 cut(s) 1051, 1283
TspDTI ATGAA 4 cut(s) 44, 48, 448, 1167
TspRI CASTG 2 cut(s) 291, 1086
VpaK11BI GGWCC 3 cut(s) 230, 396, 808
XapI RAATTY 3 cut(s) 296, 490, 1003
XceI RCATGY 3 cut(s) 175, 715, 1258
XcmI CCANNNNNNNNNTGG 1 cut(s) 1043
XhoI CTCGAG 1 cut(s) 572
XmnI GAANNNNTTC 1 cut(s) 86
XspI CTAG 9 cut(s) 119, 545, 761, 785, 894, 935, 944, 1334, 1343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.