Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000796.1

Orthogroup ID

OG0001605

Physical Location & Seq

Genomic Coordinates Forward (+)

114459 .. 115944

Gene Structure 1486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000796.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

atgcttcgagatcacacaaattttgagaaatactatgagccaagggcagtggtacttggtcccatccatcatgataaagcaagatgtcagctggcagagaagttcaagcttgcactggcagcaaagtttatccaagacagtggccgtccagctaaagatttgcacaagattgttgaggacaacatcaacacactgaaggactgctatgatgaggaagcaacaatgtcctacaccaacgaggccctcacacactttttattcttagatgggtgttcaaccttgcagttcatatactcatttatgaataacgagttaacaaatttcaagatcaagagggatcaggtgacttttgcagaacaggacttgttcctgctagaaaaccaactcccttatcaagtcctcaagctgttgatgagcttaagtgacaaagagatggaattgaagaccgcaatcaatggatttgttggaaggaacatcatggcaacaggaaaaaaatggaaatggcacaaacacaagaaaacgagtcaaccagcagatattgtcgtaaacatggaagagcccactcatcttctcgagcttctcaggacaaaaatgctaggtcccaaagaatctatcgttcccaagaagaaaaaacctaaagatcgccgacaatcattccgcaacatacaggagcttaaagcaacaaggatccatttaaagcctaattggcttcgtcttcatccaagagaccaccgacgctctcctcctgtccaggttgactttgtcgttcatccaagggcgaccgtccaaccacatcttcatagtccagttgctcacctgccaagaccagcgatctcttcacacaaccatcaattgctcacctgccaagaccagcgatctcttcaataccgatcgccttcgtcttcagcccagactctccaagcctctccaatcccagtcgcagtcatcactttgcccagaccagacccagccagttattttgggcacccacccaaagatcgattatccagatctgtcccagatcgtgatcctcttctccgtcacgttcttttcgtcagccctcacaccagccgtgcccagacgacccacctccggtcgtctgctccaatctccggcctagaacagcagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

376

Amino Acids

43.32

Weight (kDa)

9.71

Isoelectric Point (pI)

53.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001605)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02910 FvH4_6g25140
malus_domestica	MD00G1049100.v1.1 MD02G1233700.v1.1 MD07G1070100.v1.1 MD12G1022100.v1.1
prunus_persica	Prupe.7G045600_v2.0.a1 Prupe.7G045700_v2.0.a1 Prupe.7G045800_v2.0.a1 Prupe.7G046000_v2.0.a1 Prupe.8G075900_v2.0.a1 Prupe.8G076000_v2.0.a1
pyrus_communis	pycom12g02050 pycom12g07700 pycom12g07720 pycom14g07350 pycom14g07360
rosa_chinensis	RchiOBHm_Chr2g0125011
rosa_laevigata	RLG00000009906 RLG00000018842
rosa_multiflora	Rmu_sc0000796.1_g000003 Rmu_sc0000796.1_g000022 Rmu_sc0000796.1_g000026 Rmu_sc0001251.1_g000010 Rmu_sc0001251.1_g000012 Rmu_sc0010311.1_g000001 Rmu_sc0010311.1_g000003 Rmu_sc0010311.1_g000008 Rmu_sc0010311.1_g000010
rosa_roxburghii	Rroxscaffold_2G00118310 Rroxscaffold_2G00118330 Rroxscaffold_2G00118420 Rroxscaffold_2G00118460 Rroxscaffold_2G00118760
rosa_rugosa	Rorug02G0254900
rosa_samantha	Rh2AG313200 Rh2AG313500 Rh2BG321400 Rh2BG321800 Rh2CG303200 Rh2CG303500 Rh2CG303900 Rh2CG304000 Rh2DG339200 Rh2DG339500 Rh2DG340000 Rh2DG340100
rosa_wichuraiana	Rw2G025320 Rw2G025330 Rw2G025360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	825, 869
Acc36I	ACCTGC	2 cut(s)	825, 869
AccB1I	GGYRCC	1 cut(s)	984
AciI	CCGC	2 cut(s)	447, 658
AclWI	GGATC	4 cut(s)	345, 682, 695, 1022
AcoI	YGGCCR	1 cut(s)	142
AcsI	RAATTY	2 cut(s)	19, 319
AcuI	CTGAAG	2 cut(s)	215, 888
AfaI	GTAC	1 cut(s)	54
AfiI	CCNNNNNNNGG	2 cut(s)	1092, 1112
AflII	CTTAAG	1 cut(s)	418
AgsI	TTSAA	5 cut(s)	106, 276, 325, 442, 884
AjnI	CCWGG	1 cut(s)	750
AjuI	GAANNNNNNNTTGG	2 cut(s)	780, 812
AluBI	AGCT	7 cut(s)	91, 109, 152, 406, 417, 577, 673
AluI	AGCT	7 cut(s)	91, 109, 152, 406, 417, 577, 673
Alw26I	GTCTC	1 cut(s)	720
AlwI	GGATC	4 cut(s)	345, 682, 695, 1022
Ama87I	CYCGRG	1 cut(s)	572
AoxI	GGCC	3 cut(s)	142, 240, 1114
ApeKI	GCWGC	1 cut(s)	119
ApoI	RAATTY	2 cut(s)	19, 319
AspS9I	GGNCC	3 cut(s)	59, 241, 599
AsuHPI	GGTGA	3 cut(s)	355, 806, 850
AvaI	CYCGRG	1 cut(s)	572
AvaII	GGWCC	2 cut(s)	59, 599
BaeGI	GKGCMC	2 cut(s)	987, 1078
BamHI	GGATCC	1 cut(s)	687
BanI	GGYRCC	1 cut(s)	984
BanII	GRGCYC	1 cut(s)	561
BbsI	GAAGAC	3 cut(s)	449, 707, 894
BbvI	GCAGC	1 cut(s)	131
BccI	CCATC	5 cut(s)	71, 75, 260, 427, 855
BceAI	ACGGC	2 cut(s)	129, 1056
BciT130I	CCWGG	1 cut(s)	752
BcoDI	GTCTC	1 cut(s)	720
BfaI	CTAG	3 cut(s)	374, 596, 1118
BfrI	CTTAAG	1 cut(s)	418
BfuAI	ACCTGC	2 cut(s)	825, 869
BglI	GCCNNNNNGGC	1 cut(s)	706
BglII	AGATCT	1 cut(s)	1010
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
Bme1390I	CCNGG	1 cut(s)	752
Bme18I	GGWCC	2 cut(s)	59, 599
BmeT110I	CYCGRG	1 cut(s)	572
BmgT120I	GGNCC	3 cut(s)	59, 241, 599
BmiI	GGNNCC	4 cut(s)	61, 601, 689, 986
BmrFI	CCNGG	1 cut(s)	752
BmrI	ACTGGG	1 cut(s)	929
BmuI	ACTGGG	1 cut(s)	929
BpiI	GAAGAC	3 cut(s)	449, 707, 894
BpuEI	CTTGAG	1 cut(s)	386
Bsa29I	ATCGAT	1 cut(s)	1000
BsaBI	GATNNNNATC	1 cut(s)	1026
BsaI	GGTCTC	1 cut(s)	720
BsaJI	CCNNGG	2 cut(s)	41, 773
BsaWI	WCCGGW	1 cut(s)	1092
Bsc4I	CCNNNNNNNGG	2 cut(s)	1092, 1112
Bse1I	ACTGG	4 cut(s)	120, 806, 935, 972
Bse8I	GATNNNNATC	1 cut(s)	1026
BseBI	CCWGG	1 cut(s)	752
BseCI	ATCGAT	1 cut(s)	1000
BseDI	CCNNGG	2 cut(s)	41, 773
BseGI	GGATG	3 cut(s)	63, 718, 769
BseJI	GATNNNNATC	1 cut(s)	1026
BseLI	CCNNNNNNNGG	2 cut(s)	1092, 1112
BseMII	CTCAG	1 cut(s)	595
BseNI	ACTGG	4 cut(s)	120, 806, 935, 972
BseRI	GAGGAG	1 cut(s)	732
BseSI	GKGCMC	2 cut(s)	987, 1078
BseXI	GCAGC	1 cut(s)	131
BseYI	CCCAGC	1 cut(s)	967
Bsh1285I	CGRYCG	3 cut(s)	783, 893, 1097
BshFI	GGCC	3 cut(s)	144, 242, 1116
BshNI	GGYRCC	1 cut(s)	984
BshVI	ATCGAT	1 cut(s)	1000
BsiEI	CGRYCG	3 cut(s)	783, 893, 1097
BsiHKCI	CYCGRG	1 cut(s)	572
BsiSI	CCGG	2 cut(s)	1093, 1113
BslFI	GGGAC	3 cut(s)	45, 585, 1001
BslI	CCNNNNNNNGG	2 cut(s)	1092, 1112
BsmAI	GTCTC	1 cut(s)	720
BsmFI	GGGAC	3 cut(s)	45, 585, 1001
BsnI	GGCC	3 cut(s)	144, 242, 1116
Bso31I	GGTCTC	1 cut(s)	720
BsoBI	CYCGRG	1 cut(s)	572
Bsp1286I	GDGCHC	3 cut(s)	561, 987, 1078
BspACI	CCGC	2 cut(s)	447, 658
BspANI	GGCC	3 cut(s)	144, 242, 1116
BspCNI	CTCAG	1 cut(s)	594
BspDI	ATCGAT	1 cut(s)	1000
BspHI	TCATGA	1 cut(s)	70
BspLI	GGNNCC	4 cut(s)	61, 601, 689, 986
BspMI	ACCTGC	2 cut(s)	825, 869
BspPI	GGATC	4 cut(s)	345, 682, 695, 1022
BspQI	GCTCTTC	1 cut(s)	549
BspT107I	GGYRCC	1 cut(s)	984
BspTI	CTTAAG	1 cut(s)	418
BspTNI	GGTCTC	1 cut(s)	720
BsrI	ACTGG	4 cut(s)	120, 806, 935, 972
BssECI	CCNNGG	2 cut(s)	41, 773
BssT1I	CCWWGG	2 cut(s)	41, 773
Bst2UI	CCWGG	1 cut(s)	752
Bst4CI	ACNGT	2 cut(s)	140, 784
Bst6I	CTCTTC	4 cut(s)	549, 841, 885, 1038
BstAFI	CTTAAG	1 cut(s)	418
BstC8I	GCNNGC	2 cut(s)	93, 111
BstDEI	CTNAG	2 cut(s)	262, 581
BstF5I	GGATG	3 cut(s)	63, 718, 769
BstMAI	GTCTC	1 cut(s)	720
BstMCI	CGRYCG	3 cut(s)	783, 893, 1097
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 706
BstNI	CCWGG	1 cut(s)	752
BstSCI	CCNGG	1 cut(s)	750
BstSLI	GKGCMC	2 cut(s)	987, 1078
BstV1I	GCAGC	1 cut(s)	131
BstV2I	GAAGAC	3 cut(s)	449, 707, 894
BstX2I	RGATCY	2 cut(s)	687, 1010
BstXI	CCANNNNNNTGG	1 cut(s)	140
BstYI	RGATCY	2 cut(s)	687, 1010
Bsu15I	ATCGAT	1 cut(s)	1000
BsuRI	GGCC	3 cut(s)	144, 242, 1116
BsuTUI	ATCGAT	1 cut(s)	1000
BtsCI	GGATG	3 cut(s)	63, 718, 769
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	4 cut(s)	54, 113, 145, 191
BveI	ACCTGC	2 cut(s)	825, 869
Cac8I	GCNNGC	2 cut(s)	93, 111
CciI	TCATGA	1 cut(s)	70
Cfr13I	GGNCC	3 cut(s)	59, 241, 599
ClaI	ATCGAT	1 cut(s)	1000
CseI	GACGC	1 cut(s)	744
Csp6I	GTAC	1 cut(s)	53
CspCI	CAANNNNNGTGG	2 cut(s)	30, 65
CviAII	CATG	3 cut(s)	71, 478, 550
CviQI	GTAC	1 cut(s)	53
DdeI	CTNAG	2 cut(s)	262, 581
DraI	TTTAAA	1 cut(s)	696
EaeI	YGGCCR	1 cut(s)	142
Eam1104I	CTCTTC	4 cut(s)	549, 841, 885, 1038
EarI	CTCTTC	4 cut(s)	549, 841, 885, 1038
Eco130I	CCWWGG	2 cut(s)	41, 773
Eco24I	GRGCYC	1 cut(s)	561
Eco31I	GGTCTC	1 cut(s)	720
Eco47I	GGWCC	2 cut(s)	59, 599
Eco57I	CTGAAG	2 cut(s)	215, 888
Eco88I	CYCGRG	1 cut(s)	572
EcoO109I	RGGNCCY	2 cut(s)	241, 599
EcoRII	CCWGG	1 cut(s)	750
EcoT14I	CCWWGG	2 cut(s)	41, 773
EcoT38I	GRGCYC	1 cut(s)	561
ErhI	CCWWGG	2 cut(s)	41, 773
FaeI	CATG	3 cut(s)	74, 481, 553
FaqI	GGGAC	3 cut(s)	45, 585, 1001
FatI	CATG	3 cut(s)	70, 477, 549
Fnu4HI	GCNGC	1 cut(s)	120
FokI	GGATG	3 cut(s)	50, 705, 756
FriOI	GRGCYC	1 cut(s)	561
Fsp4HI	GCNGC	1 cut(s)	120
FspBI	CTAG	3 cut(s)	374, 596, 1118
GluI	GCNGC	1 cut(s)	120
GsaI	CCCAGC	1 cut(s)	971
HaeIII	GGCC	3 cut(s)	144, 242, 1116
HapII	CCGG	2 cut(s)	1093, 1113
HgaI	GACGC	1 cut(s)	744
Hin1II	CATG	3 cut(s)	74, 481, 553
HincII	GTYRAC	3 cut(s)	315, 527, 757
HindII	GTYRAC	3 cut(s)	315, 527, 757
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	3 cut(s)	523, 608, 913
HpaI	GTTAAC	1 cut(s)	315
HpaII	CCGG	2 cut(s)	1093, 1113
HphI	GGTGA	3 cut(s)	355, 806, 850
Hpy166II	GTNNAC	4 cut(s)	315, 527, 547, 757
Hpy188III	TCNNGA	8 cut(s)	8, 71, 325, 331, 572, 583, 1008, 1025
Hpy8I	GTNNAC	4 cut(s)	315, 527, 547, 757
Hpy99I	CGWCG	1 cut(s)	738
HpyAV	CCTTC	3 cut(s)	190, 462, 906
HpyCH4III	ACNGT	2 cut(s)	140, 784
HpyCH4IV	ACGT	1 cut(s)	1044
HpyCH4V	TGCA	4 cut(s)	113, 163, 283, 353
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 706
HpyF3I	CTNAG	2 cut(s)	262, 581
HpySE526I	ACGT	1 cut(s)	1044
Hsp92II	CATG	3 cut(s)	74, 481, 553
KspAI	GTTAAC	1 cut(s)	315
LguI	GCTCTTC	1 cut(s)	549
LmnI	GCTCC	2 cut(s)	670, 1108
Lsp1109I	GCAGC	1 cut(s)	131
MaeI	CTAG	3 cut(s)	374, 596, 1118
MaeII	ACGT	1 cut(s)	1044
MaeIII	GTNAC	3 cut(s)	343, 422, 1040
MfeI	CAATTG	1 cut(s)	851
MflI	RGATCY	2 cut(s)	687, 1010
MhlI	GDGCHC	3 cut(s)	561, 987, 1078
MluCI	AATT	5 cut(s)	19, 319, 437, 703, 851
MlyI	GAGTC	2 cut(s)	532, 907
MmeI	TCCRAC	2 cut(s)	445, 811
MseI	TTAA	4 cut(s)	314, 419, 675, 695
MspA1I	CMGCKG	1 cut(s)	91
MspCI	CTTAAG	1 cut(s)	418
MspI	CCGG	2 cut(s)	1093, 1113
MspR9I	CCNGG	1 cut(s)	752
MunI	CAATTG	1 cut(s)	851
MvaI	CCWGG	1 cut(s)	752
MwoI	GCNNNNNNNGC	2 cut(s)	119, 706
NlaIII	CATG	3 cut(s)	74, 481, 553
NlaIV	GGNNCC	4 cut(s)	61, 601, 689, 986
NmuCI	GTSAC	3 cut(s)	343, 422, 1040
PaeR7I	CTCGAG	1 cut(s)	572
PagI	TCATGA	1 cut(s)	70
PaqCI	CACCTGC	2 cut(s)	825, 869
PciSI	GCTCTTC	1 cut(s)	549
PcsI	WCGNNNNNNNCGW	1 cut(s)	1050
PfeI	GAWTC	1 cut(s)	608
PflFI	GACNNNGTC	1 cut(s)	761
PkrI	GCNGC	1 cut(s)	121
Ple19I	CGATCG	1 cut(s)	893
PleI	GAGTC	2 cut(s)	531, 907
PpsI	GAGTC	2 cut(s)	531, 907
PpuMI	RGGWCCY	1 cut(s)	599
Psp5II	RGGWCCY	1 cut(s)	599
Psp6I	CCWGG	1 cut(s)	750
PspFI	CCCAGC	1 cut(s)	967
PspGI	CCWGG	1 cut(s)	750
PspN4I	GGNNCC	4 cut(s)	61, 601, 689, 986
PspPI	GGNCC	3 cut(s)	59, 241, 599
PspPPI	RGGWCCY	1 cut(s)	599
PsuI	RGATCY	2 cut(s)	687, 1010
PsyI	GACNNNGTC	1 cut(s)	761
PvuI	CGATCG	1 cut(s)	893
PvuII	CAGCTG	1 cut(s)	91
RsaI	GTAC	1 cut(s)	54
RsaNI	GTAC	1 cut(s)	53
SapI	GCTCTTC	1 cut(s)	549
SaqAI	TTAA	4 cut(s)	314, 419, 675, 695
SatI	GCNGC	1 cut(s)	120
Sau96I	GGNCC	3 cut(s)	59, 241, 599
SchI	GAGTC	2 cut(s)	532, 907
ScrFI	CCNGG	1 cut(s)	752
SduI	GDGCHC	3 cut(s)	561, 987, 1078
Sfr274I	CTCGAG	1 cut(s)	572
SinI	GGWCC	2 cut(s)	59, 599
SlaI	CTCGAG	1 cut(s)	572
SmlI	CTYRAG	3 cut(s)	401, 418, 572
SmoI	CTYRAG	3 cut(s)	401, 418, 572
Sse9I	AATT	5 cut(s)	19, 319, 437, 703, 851
SsiI	CCGC	2 cut(s)	447, 658
SspMI	CTAG	3 cut(s)	374, 596, 1118
StyD4I	CCNGG	1 cut(s)	750
StyI	CCWWGG	2 cut(s)	41, 773
TaaI	ACNGT	2 cut(s)	140, 784
TaiI	ACGT	1 cut(s)	1047
TaqI	TCGA	3 cut(s)	7, 573, 1000
TasI	AATT	5 cut(s)	19, 319, 437, 703, 851
TfiI	GAWTC	1 cut(s)	608
Tru1I	TTAA	4 cut(s)	314, 419, 675, 695
Tru9I	TTAA	4 cut(s)	314, 419, 675, 695
TscAI	CASTG	4 cut(s)	54, 120, 145, 198
TseFI	GTSAC	3 cut(s)	343, 422, 1040
TseI	GCWGC	1 cut(s)	119
Tsp45I	GTSAC	3 cut(s)	343, 422, 1040
TspDTI	ATGAA	5 cut(s)	277, 317, 707, 758, 788
TspGWI	ACGGA	1 cut(s)	1028
TspRI	CASTG	4 cut(s)	54, 120, 145, 198
Tth111I	GACNNNGTC	1 cut(s)	761
Vha464I	CTTAAG	1 cut(s)	418
VpaK11BI	GGWCC	2 cut(s)	59, 599
XapI	RAATTY	2 cut(s)	19, 319
XhoI	CTCGAG	1 cut(s)	572
XspI	CTAG	3 cut(s)	374, 596, 1118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.