Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000737

Physical Location & Seq

Genomic Coordinates Reverse (-)

22043835 .. 22044587

Gene Structure 753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g18101.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGATAGGTTGGTTGCATATGAGAAGGCTCTCAGCACTTGGGCAACATGGGTAGACTCGCATGTAGACCCTGCAAAAACCAAGTTTCGGGGGACAGAGGTGTTCTATGAAATTTCATCAAAATGGGGTGATCCAAAAGCAGGAAGCTGCAATGGACAAACTAAACCCCTTCCAGGTCCAAGCTATCCTCATGAGAAAATAGTGGAGAAAGTATTGCGCACCATGTCAAAGCCAGTCCAATTGCTTGATGTCACAACTCTTTCACAACTAAGAAAAGATTGGCACCCCTCTTTCTATGGCCTTGGTGGGCACAGAGCCTCAGACTGCAGCCATCGGTGTTTAGCTGGAGTTCCTGATACTTGGAACATTCTTCTTTATGCAGCTCTTGGAGGACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

133

Amino Acids

14.67

Weight (kDa)

8.79

Isoelectric Point (pI)

34.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	1 - 127	5.8e-31	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000737)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18101 FvH4_4g19380 FvH4_5g32790 FvH4_5g32790 FvH4_6g27901 FvH4_6g37530
malus_domestica	MD09G1233400.v1.1 MD09G1233600.v1.1 MD17G1143400.v1.1 MD17G1229900.v1.1 MD17G1230000.v1.1
prunus_persica	Prupe.3G108000_v2.0.a1 Prupe.3G108000_v2.0.a1 Prupe.3G108200_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G168700_v2.0.a1
pyrus_communis	pycom09g15180 pycom17g23260 pycom17g23270
rosa_chinensis	RchiOBHm_Chr2g0131401 RchiOBHm_Chr2g0131411 RchiOBHm_Chr2g0131441 RchiOBHm_Chr2g0150421 RchiOBHm_Chr4g0424421
rosa_laevigata	RLG00000007476 RLG00000019182 RLG00000019183 RLG00000020497
rosa_multiflora	Rmu_sc0003445.1_g000007 Rmu_sc0003567.1_g000013 Rmu_sc0005652.1_g000008 Rmu_sc0005652.1_g000023 Rmu_sc0005652.1_g000030 Rmu_sc0016958.1_g000002 Rmu_sc0043021.1_g000001 Rmu_ssc0000480.1_g000015
rosa_roxburghii	Rroxscaffold_2G00097140 Rroxscaffold_2G00112870 Rroxscaffold_2G00112970 Rroxscaffold_2G00112980 Rroxscaffold_5G00366360
rosa_rugosa	Rorug02G0296600 Rorug02G0296700 Rorug02G0421100 Rorug02G0421200 Rorug04G0197700
rosa_samantha	Rh2AG350000 Rh2AG350400 Rh2AG480500 Rh2BG356700 Rh2BG356800 Rh2BG492600 Rh2CG335500 Rh2CG335600 Rh2CG335700 Rh2CG335900 Rh2CG466800 Rh2DG374400 Rh2DG501400 Rh4AG253500 Rh4BG258900 Rh4CG270200 Rh4DG253500
rosa_wichuraiana	Rw2G028380 Rw2G028390 Rw2G028420 Rw2G039220 Rw4G021880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	218
AccB1I	GGYRCC	1 cut(s)	282
AccI	GTMKAC	2 cut(s)	54, 66
AclWI	GGATC	1 cut(s)	125
AcsI	RAATTY	1 cut(s)	111
AfiI	CCNNNNNNNGG	3 cut(s)	87, 140, 173
AjnI	CCWGG	1 cut(s)	172
AluBI	AGCT	4 cut(s)	147, 183, 344, 383
AluI	AGCT	4 cut(s)	147, 183, 344, 383
AlwI	GGATC	1 cut(s)	125
AoxI	GGCC	1 cut(s)	298
ApeKI	GCWGC	3 cut(s)	147, 327, 380
ApoI	RAATTY	1 cut(s)	111
AspLEI	GCGC	1 cut(s)	219
AspS9I	GGNCC	2 cut(s)	176, 392
AsuHPI	GGTGA	1 cut(s)	140
AvaII	GGWCC	2 cut(s)	176, 392
BaeGI	GKGCMC	1 cut(s)	312
BanI	GGYRCC	1 cut(s)	282
BbvI	GCAGC	3 cut(s)	134, 339, 392
BccI	CCATC	1 cut(s)	339
BciT130I	CCWGG	1 cut(s)	174
BfmI	CTRYAG	1 cut(s)	325
BisI	GCNGC	3 cut(s)	148, 328, 381
BlsI	GCNGC	3 cut(s)	149, 329, 382
Bme1390I	CCNGG	1 cut(s)	174
Bme18I	GGWCC	2 cut(s)	176, 392
BmgT120I	GGNCC	2 cut(s)	176, 392
BmiI	GGNNCC	1 cut(s)	284
BmrFI	CCNGG	1 cut(s)	174
BpmI	CTGGAG	1 cut(s)	366
BsaJI	CCNNGG	1 cut(s)	301
Bsc4I	CCNNNNNNNGG	3 cut(s)	87, 140, 173
Bse1I	ACTGG	1 cut(s)	233
Bse3DI	GCAATG	1 cut(s)	157
BseBI	CCWGG	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	301
BseLI	CCNNNNNNNGG	3 cut(s)	87, 140, 173
BseMI	GCAATG	1 cut(s)	157
BseMII	CTCAG	2 cut(s)	46, 333
BseNI	ACTGG	1 cut(s)	233
BseSI	GKGCMC	1 cut(s)	312
BseXI	GCAGC	3 cut(s)	134, 339, 392
BshFI	GGCC	1 cut(s)	300
BshNI	GGYRCC	1 cut(s)	282
BslFI	GGGAC	1 cut(s)	106
BslI	CCNNNNNNNGG	3 cut(s)	87, 140, 173
BsmFI	GGGAC	1 cut(s)	106
BsnI	GGCC	1 cut(s)	300
Bsp1286I	GDGCHC	1 cut(s)	312
Bsp143I	GATC	1 cut(s)	130
BspANI	GGCC	1 cut(s)	300
BspCNI	CTCAG	2 cut(s)	45, 332
BspHI	TCATGA	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	284
BspMAI	CTGCAG	1 cut(s)	329
BspPI	GGATC	1 cut(s)	125
BspT107I	GGYRCC	1 cut(s)	282
BsrDI	GCAATG	1 cut(s)	157
BsrI	ACTGG	1 cut(s)	233
BssECI	CCNNGG	1 cut(s)	301
BssMI	GATC	1 cut(s)	130
BssT1I	CCWWGG	1 cut(s)	301
Bst2UI	CCWGG	1 cut(s)	174
BstDEI	CTNAG	3 cut(s)	32, 269, 319
BstHHI	GCGC	1 cut(s)	219
BstKTI	GATC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	130
BstNI	CCWGG	1 cut(s)	174
BstNSI	RCATGY	1 cut(s)	65
BstSCI	CCNGG	1 cut(s)	172
BstSFI	CTRYAG	1 cut(s)	325
BstSLI	GKGCMC	1 cut(s)	312
BstV1I	GCAGC	3 cut(s)	134, 339, 392
BsuRI	GGCC	1 cut(s)	300
CciI	TCATGA	1 cut(s)	190
CfoI	GCGC	1 cut(s)	219
Cfr13I	GGNCC	2 cut(s)	176, 392
CviAII	CATG	4 cut(s)	48, 62, 191, 223
CviJI	RGCY	9 cut(s)	29, 147, 183, 232, 300, 317, 330, 344, 383
CviKI_1	RGCY	9 cut(s)	29, 147, 183, 232, 300, 317, 330, 344, 383
DdeI	CTNAG	3 cut(s)	32, 269, 319
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
Eco130I	CCWWGG	1 cut(s)	301
Eco47I	GGWCC	2 cut(s)	176, 392
EcoO109I	RGGNCCY	1 cut(s)	392
EcoRII	CCWGG	1 cut(s)	172
EcoT14I	CCWWGG	1 cut(s)	301
ErhI	CCWWGG	1 cut(s)	301
FaeI	CATG	4 cut(s)	51, 65, 194, 226
FaiI	YATR	9 cut(s)	19, 21, 49, 63, 108, 192, 224, 297, 378
FaqI	GGGAC	1 cut(s)	106
FatI	CATG	4 cut(s)	47, 61, 190, 222
FauNDI	CATATG	1 cut(s)	19
FblI	GTMKAC	2 cut(s)	54, 66
Fnu4HI	GCNGC	3 cut(s)	148, 328, 381
Fsp4HI	GCNGC	3 cut(s)	148, 328, 381
FspI	TGCGCA	1 cut(s)	218
GlaI	GCGC	1 cut(s)	218
GluI	GCNGC	3 cut(s)	148, 328, 381
GsuI	CTGGAG	1 cut(s)	366
HaeIII	GGCC	1 cut(s)	300
HhaI	GCGC	1 cut(s)	219
Hin1II	CATG	4 cut(s)	51, 65, 194, 226
Hin6I	GCGC	1 cut(s)	217
HinP1I	GCGC	1 cut(s)	217
HinfI	GANTC	1 cut(s)	56
HphI	GGTGA	1 cut(s)	140
Hpy166II	GTNNAC	2 cut(s)	55, 67
Hpy188I	TCNGA	1 cut(s)	322
Hpy188III	TCNNGA	2 cut(s)	191, 353
Hpy8I	GTNNAC	2 cut(s)	55, 67
HpyAV	CCTTC	2 cut(s)	19, 179
HpyCH4V	TGCA	5 cut(s)	17, 74, 150, 327, 380
HpyF3I	CTNAG	3 cut(s)	32, 269, 319
Hsp92II	CATG	4 cut(s)	51, 65, 194, 226
HspAI	GCGC	1 cut(s)	217
Kzo9I	GATC	1 cut(s)	130
LpnPI	CCDG	7 cut(s)	84, 126, 159, 186, 246, 330, 366
Lsp1109I	GCAGC	3 cut(s)	134, 339, 392
MaeIII	GTNAC	1 cut(s)	250
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	1 cut(s)	362
MfeI	CAATTG	1 cut(s)	239
MhlI	GDGCHC	1 cut(s)	312
MluCI	AATT	2 cut(s)	111, 239
MlyI	GAGTC	1 cut(s)	50
MnlI	CCTC	5 cut(s)	91, 198, 298, 328, 383
MseI	TTAA	1 cut(s)	397
MslI	CAYNNNNRTG	1 cut(s)	121
MspR9I	CCNGG	1 cut(s)	174
MunI	CAATTG	1 cut(s)	239
MvaI	CCWGG	1 cut(s)	174
NdeI	CATATG	1 cut(s)	19
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	4 cut(s)	51, 65, 194, 226
NlaIV	GGNNCC	1 cut(s)	284
NmuCI	GTSAC	1 cut(s)	250
NsbI	TGCGCA	1 cut(s)	218
NspI	RCATGY	1 cut(s)	65
PagI	TCATGA	1 cut(s)	190
PkrI	GCNGC	3 cut(s)	149, 329, 382
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
PpuMI	RGGWCCY	1 cut(s)	392
Psp5II	RGGWCCY	1 cut(s)	392
Psp6I	CCWGG	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	172
PspN4I	GGNNCC	1 cut(s)	284
PspPI	GGNCC	2 cut(s)	176, 392
PspPPI	RGGWCCY	1 cut(s)	392
PstI	CTGCAG	1 cut(s)	329
RseI	CAYNNNNRTG	1 cut(s)	121
SaqAI	TTAA	1 cut(s)	397
SatI	GCNGC	3 cut(s)	148, 328, 381
Sau3AI	GATC	1 cut(s)	130
Sau96I	GGNCC	2 cut(s)	176, 392
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	1 cut(s)	174
SduI	GDGCHC	1 cut(s)	312
SetI	ASST	8 cut(s)	11, 102, 149, 178, 185, 346, 385, 397
SfcI	CTRYAG	1 cut(s)	325
SinI	GGWCC	2 cut(s)	176, 392
SmiMI	CAYNNNNRTG	1 cut(s)	121
Sse9I	AATT	2 cut(s)	111, 239
StyD4I	CCNGG	1 cut(s)	172
StyI	CCWWGG	1 cut(s)	301
TasI	AATT	2 cut(s)	111, 239
Tru1I	TTAA	1 cut(s)	397
Tru9I	TTAA	1 cut(s)	397
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	3 cut(s)	147, 327, 380
Tsp45I	GTSAC	1 cut(s)	250
TspDTI	ATGAA	2 cut(s)	105, 123
VpaK11BI	GGWCC	2 cut(s)	176, 392
XapI	RAATTY	1 cut(s)	111
XceI	RCATGY	1 cut(s)	65
XmiI	GTMKAC	2 cut(s)	54, 66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.