RLG00000020497

Protein trichome birefringence-like 43

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
65634925 .. 65636153
1229 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020497

Sequence Viewer

Length: 537 bp
ATGGGCGACCCGACAAACACTATCTCAAATATAGATGGCAACACTCTTCATGCATGCATGTTACCAAGACTTTATAGGTTTGATGGTGAAGATTTATTGGAGAGATTGAGAAATAAGCGCATCATGTTTGTTGGAGACTCGTTAAGTTTGAACCAGTGGCAATCTCTCACATGTATGCTTCATGCAGCCTCACCACAATCCAAGTACGCTATTGAAAGAACAGGAAGCATCTCTACAATGACATTCCAGAAGAAAGACGGGAGGGTTTTGAAGCTGGACTCCATTGATCATAAGGATCAGAAAGCATGGAAAGACATTGATATATTGATTTTCAACTCATGGCATTGGTGGCTCCACACAGGAAGGAAACAACCGTGGGATTTTATTCAAGATGGAGACAATTTACATGAAGACATGGATCCCCTTGTTGCTTATGAGAAAGCCTTAAAAACTTGGGCTCGATGGGTGGACAAAAATGTTGATCCGACTAAAACCAAAGTCTTCTTTCAAGGGATTTCACCCACTCATTGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

179

Amino Acids

20.85

Weight (kDa)

7.81

Isoelectric Point (pI)

41.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PC-Esterase PF13839 26 - 86 1.2e-19 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
PC-Esterase PF13839 83 - 177 3.2e-29 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 528
AclWI GGATC 4 cut(s) 303, 413, 426, 476
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 1 cut(s) 528
AflIII ACRYGT 1 cut(s) 170
AgsI TTSAA 6 cut(s) 151, 215, 271, 334, 389, 509
AluBI AGCT 1 cut(s) 274
AluI AGCT 1 cut(s) 274
Alw26I GTCTC 2 cut(s) 129, 390
AlwI GGATC 4 cut(s) 303, 413, 426, 476
ApeKI GCWGC 1 cut(s) 185
AspLEI GCGC 1 cut(s) 120
AsuHPI GGTGA 3 cut(s) 98, 183, 510
BamHI GGATCC 1 cut(s) 418
BanII GRGCYC 1 cut(s) 460
BarI GAAGNNNNNNTAC 2 cut(s) 217, 249
BbsI GAAGAC 2 cut(s) 417, 493
BbvI GCAGC 1 cut(s) 197
BccI CCATC 4 cut(s) 29, 77, 386, 456
BclI TGATCA 1 cut(s) 286
BcoDI GTCTC 2 cut(s) 129, 390
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
BmiI GGNNCC 2 cut(s) 353, 420
BmsI GCATC 2 cut(s) 129, 237
BpiI GAAGAC 2 cut(s) 417, 493
BsaJI CCNNGG 1 cut(s) 374
Bsc4I CCNNNNNNNGG 1 cut(s) 528
Bse1I ACTGG 1 cut(s) 154
BseDI CCNNGG 1 cut(s) 374
BseLI CCNNNNNNNGG 1 cut(s) 528
BseNI ACTGG 1 cut(s) 154
BseXI GCAGC 1 cut(s) 197
BslI CCNNNNNNNGG 1 cut(s) 528
BsmAI GTCTC 2 cut(s) 129, 390
Bsp1286I GDGCHC 1 cut(s) 460
Bsp143I GATC 4 cut(s) 286, 295, 418, 481
BspLI GGNNCC 2 cut(s) 353, 420
BspPI GGATC 4 cut(s) 303, 413, 426, 476
BsrI ACTGG 1 cut(s) 154
BssECI CCNNGG 1 cut(s) 374
BssMI GATC 4 cut(s) 286, 295, 418, 481
Bst4CI ACNGT 1 cut(s) 375
Bst6I CTCTTC 1 cut(s) 51
BstC8I GCNNGC 1 cut(s) 55
BstDSI CCRYGG 1 cut(s) 374
BstHHI GCGC 1 cut(s) 120
BstKTI GATC 4 cut(s) 289, 298, 421, 484
BstMAI GTCTC 2 cut(s) 129, 390
BstMBI GATC 4 cut(s) 286, 295, 418, 481
BstMWI GCNNNNNNNGC 1 cut(s) 349
BstNSI RCATGY 3 cut(s) 57, 61, 174
BstV1I GCAGC 1 cut(s) 197
BstV2I GAAGAC 2 cut(s) 417, 493
BstX2I RGATCY 1 cut(s) 418
BstYI RGATCY 1 cut(s) 418
BtgI CCRYGG 1 cut(s) 374
BtsIMutI CAGTG 1 cut(s) 161
Cac8I GCNNGC 1 cut(s) 55
CfoI GCGC 1 cut(s) 120
Csp6I GTAC 1 cut(s) 205
CviJI RGCY 5 cut(s) 188, 274, 352, 443, 458
CviKI_1 RGCY 5 cut(s) 188, 274, 352, 443, 458
CviQI GTAC 1 cut(s) 205
DpnI GATC 4 cut(s) 288, 297, 420, 483
DpnII GATC 4 cut(s) 286, 295, 418, 481
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco24I GRGCYC 1 cut(s) 460
EcoT22I ATGCAT 2 cut(s) 55, 59
EcoT38I GRGCYC 1 cut(s) 460
FbaI TGATCA 1 cut(s) 286
Fnu4HI GCNGC 1 cut(s) 186
FriOI GRGCYC 1 cut(s) 460
Fsp4HI GCNGC 1 cut(s) 186
GlaI GCGC 1 cut(s) 119
GluI GCNGC 1 cut(s) 186
HhaI GCGC 1 cut(s) 120
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HinfI GANTC 2 cut(s) 137, 278
HphI GGTGA 3 cut(s) 98, 183, 510
Hpy166II GTNNAC 1 cut(s) 469
Hpy188I TCNGA 2 cut(s) 300, 486
Hpy188III TCNNGA 2 cut(s) 247, 389
Hpy8I GTNNAC 1 cut(s) 469
HpyAV CCTTC 1 cut(s) 357
HpyCH4III ACNGT 1 cut(s) 375
HpyCH4V TGCA 3 cut(s) 53, 57, 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 349
HspAI GCGC 1 cut(s) 118
Ksp22I TGATCA 1 cut(s) 286
Kzo9I GATC 4 cut(s) 286, 295, 418, 481
LmnI GCTCC 1 cut(s) 357
LpnPI CCDG 5 cut(s) 167, 207, 260, 260, 345
Lsp1109I GCAGC 1 cut(s) 197
LweI GCATC 2 cut(s) 129, 237
MaeIII GTNAC 1 cut(s) 60
MalI GATC 4 cut(s) 288, 297, 420, 483
MboI GATC 4 cut(s) 286, 295, 418, 481
MboII GAAGA 5 cut(s) 38, 101, 262, 422, 493
MflI RGATCY 1 cut(s) 418
MhlI GDGCHC 1 cut(s) 460
MluCI AATT 1 cut(s) 400
MlyI GAGTC 2 cut(s) 131, 272
MmeI TCCRAC 2 cut(s) 112, 509
MnlI CCTC 2 cut(s) 199, 255
Mph1103I ATGCAT 2 cut(s) 55, 59
MseI TTAA 2 cut(s) 143, 446
MslI CAYNNNNRTG 1 cut(s) 173
MwoI GCNNNNNNNGC 1 cut(s) 349
NdeII GATC 4 cut(s) 286, 295, 418, 481
NlaIV GGNNCC 2 cut(s) 353, 420
NsiI ATGCAT 2 cut(s) 55, 59
NspI RCATGY 3 cut(s) 57, 61, 174
PaeI GCATGC 1 cut(s) 57
PciI ACATGT 1 cut(s) 170
PflMI CCANNNNNTGG 1 cut(s) 528
PkrI GCNGC 1 cut(s) 187
PleI GAGTC 2 cut(s) 131, 272
PpsI GAGTC 2 cut(s) 131, 272
PscI ACATGT 1 cut(s) 170
PspN4I GGNNCC 2 cut(s) 353, 420
PsuI RGATCY 1 cut(s) 418
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
RseI CAYNNNNRTG 1 cut(s) 173
SaqAI TTAA 2 cut(s) 143, 446
SatI GCNGC 1 cut(s) 186
Sau3AI GATC 4 cut(s) 286, 295, 418, 481
SchI GAGTC 2 cut(s) 131, 272
SduI GDGCHC 1 cut(s) 460
SetI ASST 2 cut(s) 80, 276
SfaNI GCATC 2 cut(s) 129, 237
SmiMI CAYNNNNRTG 1 cut(s) 173
SphI GCATGC 1 cut(s) 57
Sse9I AATT 1 cut(s) 400
TaaI ACNGT 1 cut(s) 375
TaqI TCGA 1 cut(s) 460
TasI AATT 1 cut(s) 400
Tru1I TTAA 2 cut(s) 143, 446
Tru9I TTAA 2 cut(s) 143, 446
TscAI CASTG 1 cut(s) 161
TseI GCWGC 1 cut(s) 185
TspDTI ATGAA 3 cut(s) 38, 170, 423
TspRI CASTG 1 cut(s) 161
Van91I CCANNNNNTGG 1 cut(s) 528
XceI RCATGY 3 cut(s) 57, 61, 174
Zsp2I ATGCAT 2 cut(s) 55, 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.