Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000737

Physical Location & Seq

Genomic Coordinates Reverse (-)

38265742 .. 38269760

Gene Structure 4019 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00112870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGCTAATTTTTTCATAAGCACAGCTTTTATGGTGGTCACTCTTCTGCACTACCATGTACATGGAGATCATCAGCAGAAGCATTCTGACAGGGAAACTAAAGAAGCTGGAAATGAAGGATGTGATATGTTCCAAGGGAGGTGGGTTTCCGATGAGTCATATCCGCTCTACAATTCATCACAATGCTCCTTCGTAGAGAGAGAGTTCACTTGCATACAAAACGGGCGTCCCGACGAATTTTATCTCAAATTCCGGTGGCAGCCCACTGGTTGCAACTTAACAAGGTTCAACGGGGGAGATTTCTTGAAAAGATATAGAGGGAAGAGCTTCATGTTTGTTGGGGACTCGTTGAGTTTGAATCAATGGCAGTCACTCACTTGCATGCTTCATACAGCTGTTCCAGATGCCGACTATACACTTGTTAGGGCTGGAGACCTATCCACATTCACCTTCCCAGAATACAATGTTAAGGTGATGTTCTCTCGGAATGCATTTCTGGTCGATACAATAGCAACACCTGCTGGCCGAGTTCTTAAGCTCGACTCTATTGAAAGCGGGAAACTTTGGAAGGGAATTGACTTCTTGATCTTCAACACATGGCATTGGTGGCTGCACACTGGAAGGAAGCAACCTTGGGATCTTATTCAAGAAGGAAACAGTACCTATAAAGACATGGATCGGTTGGTTGCTTATGAGAAAGGGCTCAATACATGGGCTAAATGGGTAGACACCAATGTGGACCAAACAAAAACCAGAGTCTTCTTCCAAGGAGTTTCCCCAGATCACAATAAGTTCTTCACCAGTGCAAGTGATTGGAAGGATCCTACTGCAAAAACTTGTGAGGGACAAATGCAACCAGTGGCCGGGTCTCAGTATCCAGCAGGACCACATCCAGCAGAGCAAGTAGTAGAAAGAGTATTGCATTCCATGTCATTTCGAGTTTATTTGCTAAACGTGACGACCCTTTCACAACTAAGAAAAGATGGGCATCCATCTGTGTACGGCCATGGTGGTCACAAGGACATGGATTGCAGCCATTGGTGTCTTGCTGGAGTTCCGGATACATGGAATGAACTCCTATATGCTGCTCTTATACAAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

367

Amino Acids

42.14

Weight (kDa)

6.42

Isoelectric Point (pI)

28.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	40 - 92	1.4e-23	PMR5 N terminal Domain
PC-Esterase	PF13839	93 - 362	1.6e-92	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000737)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18101 FvH4_4g19380 FvH4_5g32790 FvH4_5g32790 FvH4_6g27901 FvH4_6g37530
malus_domestica	MD09G1233400.v1.1 MD09G1233600.v1.1 MD17G1143400.v1.1 MD17G1229900.v1.1 MD17G1230000.v1.1
prunus_persica	Prupe.3G108000_v2.0.a1 Prupe.3G108000_v2.0.a1 Prupe.3G108200_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G168700_v2.0.a1
pyrus_communis	pycom09g15180 pycom17g23260 pycom17g23270
rosa_chinensis	RchiOBHm_Chr2g0131401 RchiOBHm_Chr2g0131411 RchiOBHm_Chr2g0131441 RchiOBHm_Chr2g0150421 RchiOBHm_Chr4g0424421
rosa_laevigata	RLG00000007476 RLG00000019182 RLG00000019183 RLG00000020497
rosa_multiflora	Rmu_sc0003445.1_g000007 Rmu_sc0003567.1_g000013 Rmu_sc0005652.1_g000008 Rmu_sc0005652.1_g000023 Rmu_sc0005652.1_g000030 Rmu_sc0016958.1_g000002 Rmu_sc0043021.1_g000001 Rmu_ssc0000480.1_g000015
rosa_roxburghii	Rroxscaffold_2G00097140 Rroxscaffold_2G00112870 Rroxscaffold_2G00112970 Rroxscaffold_2G00112980 Rroxscaffold_5G00366360
rosa_rugosa	Rorug02G0296600 Rorug02G0296700 Rorug02G0421100 Rorug02G0421200 Rorug04G0197700
rosa_samantha	Rh2AG350000 Rh2AG350400 Rh2AG480500 Rh2BG356700 Rh2BG356800 Rh2BG492600 Rh2CG335500 Rh2CG335600 Rh2CG335700 Rh2CG335900 Rh2CG466800 Rh2DG374400 Rh2DG501400 Rh4AG253500 Rh4BG258900 Rh4CG270200 Rh4DG253500
rosa_wichuraiana	Rw2G028380 Rw2G028390 Rw2G028420 Rw2G039220 Rw4G021880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	526
Acc36I	ACCTGC	1 cut(s)	526
AccBSI	CCGCTC	1 cut(s)	166
AccI	GTMKAC	1 cut(s)	726
AccIII	TCCGGA	1 cut(s)	1057
AciI	CCGC	2 cut(s)	164, 555
AclWI	GGATC	4 cut(s)	645, 684, 815, 828
AcoI	YGGCCR	3 cut(s)	523, 861, 1003
AcsI	RAATTY	2 cut(s)	236, 248
AcyI	GRCGYC	1 cut(s)	226
AfaI	GTAC	3 cut(s)	60, 661, 1001
AfiI	CCNNNNNNNGG	1 cut(s)	863
AflII	CTTAAG	1 cut(s)	533
AgsI	TTSAA	6 cut(s)	289, 307, 358, 551, 592, 647
AleI	CACNNNNGTG	1 cut(s)	734
AluBI	AGCT	6 cut(s)	26, 107, 327, 395, 538, 1101
AluI	AGCT	6 cut(s)	26, 107, 327, 395, 538, 1101
Alw26I	GTCTC	2 cut(s)	426, 873
AlwI	GGATC	4 cut(s)	645, 684, 815, 828
Aor13HI	TCCGGA	1 cut(s)	1057
AoxI	GGCC	3 cut(s)	523, 861, 1003
ApeKI	GCWGC	4 cut(s)	259, 610, 1032, 1085
ApoI	RAATTY	2 cut(s)	236, 248
ArsI	GACNNNNNNTTYG	2 cut(s)	211, 243
Asp700I	GAANNNNTTC	1 cut(s)	326
AspS9I	GGNCC	2 cut(s)	739, 884
AsuC2I	CCSGG	1 cut(s)	865
AsuHPI	GGTGA	3 cut(s)	439, 484, 790
AvaII	GGWCC	2 cut(s)	739, 884
BamHI	GGATCC	1 cut(s)	820
BanII	GRGCYC	1 cut(s)	705
BbsI	GAAGAC	1 cut(s)	751
BbvI	GCAGC	4 cut(s)	271, 597, 1044, 1072
BccI	CCATC	2 cut(s)	977, 1000
BceAI	ACGGC	1 cut(s)	1018
BciVI	GTATCC	2 cut(s)	885, 1054
BcnI	CCSGG	1 cut(s)	865
BcoDI	GTCTC	2 cut(s)	426, 873
BfrI	CTTAAG	1 cut(s)	533
BfuAI	ACCTGC	1 cut(s)	526
BfuI	GTATCC	2 cut(s)	885, 1054
BisI	GCNGC	4 cut(s)	260, 611, 1033, 1086
BlsI	GCNGC	4 cut(s)	261, 612, 1034, 1087
Bme1390I	CCNGG	1 cut(s)	865
Bme18I	GGWCC	2 cut(s)	739, 884
BmgT120I	GGNCC	2 cut(s)	739, 884
BmiI	GGNNCC	1 cut(s)	822
BmrFI	CCNGG	1 cut(s)	865
BmsI	GCATC	2 cut(s)	394, 997
BpiI	GAAGAC	1 cut(s)	751
BpmI	CTGGAG	2 cut(s)	450, 1071
BpuMI	CCSGG	1 cut(s)	865
BsaBI	GATNNNNATC	1 cut(s)	987
BsaHI	GRCGYC	1 cut(s)	226
BsaI	GGTCTC	2 cut(s)	426, 873
BsaJI	CCNNGG	4 cut(s)	133, 632, 766, 1006
BsaWI	WCCGGW	2 cut(s)	252, 1057
Bsc4I	CCNNNNNNNGG	1 cut(s)	863
Bse1I	ACTGG	4 cut(s)	271, 622, 801, 857
Bse8I	GATNNNNATC	1 cut(s)	987
BseAI	TCCGGA	1 cut(s)	1057
BseDI	CCNNGG	4 cut(s)	133, 632, 766, 1006
BseGI	GGATG	3 cut(s)	125, 889, 988
BseJI	GATNNNNATC	1 cut(s)	987
BseLI	CCNNNNNNNGG	1 cut(s)	863
BseMII	CTCAG	1 cut(s)	884
BseNI	ACTGG	4 cut(s)	271, 622, 801, 857
BseXI	GCAGC	4 cut(s)	271, 597, 1044, 1072
BsgI	GTGCAG	2 cut(s)	32, 596
BshFI	GGCC	3 cut(s)	525, 863, 1005
BsiSI	CCGG	3 cut(s)	253, 864, 1058
BslFI	GGGAC	3 cut(s)	213, 356, 858
BslI	CCNNNNNNNGG	1 cut(s)	863
BsmAI	GTCTC	2 cut(s)	426, 873
BsmFI	GGGAC	3 cut(s)	213, 356, 858
BsmI	GAATGC	3 cut(s)	82, 493, 922
BsnI	GGCC	3 cut(s)	525, 863, 1005
Bso31I	GGTCTC	2 cut(s)	426, 873
Bsp1286I	GDGCHC	1 cut(s)	705
Bsp13I	TCCGGA	1 cut(s)	1057
Bsp1407I	TGTACA	1 cut(s)	58
Bsp143I	GATC	6 cut(s)	67, 585, 637, 676, 781, 820
Bsp19I	CCATGG	1 cut(s)	1006
BspACI	CCGC	2 cut(s)	164, 555
BspANI	GGCC	3 cut(s)	525, 863, 1005
BspCNI	CTCAG	1 cut(s)	883
BspEI	TCCGGA	1 cut(s)	1057
BspLI	GGNNCC	1 cut(s)	822
BspMI	ACCTGC	1 cut(s)	526
BspPI	GGATC	4 cut(s)	645, 684, 815, 828
BspQI	GCTCTTC	1 cut(s)	317
BspTI	CTTAAG	1 cut(s)	533
BspTNI	GGTCTC	2 cut(s)	426, 873
BsrBI	CCGCTC	1 cut(s)	166
BsrGI	TGTACA	1 cut(s)	58
BsrI	ACTGG	4 cut(s)	271, 622, 801, 857
BssECI	CCNNGG	4 cut(s)	133, 632, 766, 1006
BssMI	GATC	6 cut(s)	67, 585, 637, 676, 781, 820
BssNI	GRCGYC	1 cut(s)	226
BssT1I	CCWWGG	4 cut(s)	133, 632, 766, 1006
Bst4CI	ACNGT	1 cut(s)	659
Bst6I	CTCTTC	2 cut(s)	48, 317
BstACI	GRCGYC	1 cut(s)	226
BstAFI	CTTAAG	1 cut(s)	533
BstAPI	GCANNNNNTGC	1 cut(s)	518
BstAUI	TGTACA	1 cut(s)	58
BstC8I	GCNNGC	2 cut(s)	383, 523
BstDEI	CTNAG	2 cut(s)	870, 974
BstDSI	CCRYGG	1 cut(s)	1006
BstF5I	GGATG	3 cut(s)	125, 889, 988
BstKTI	GATC	6 cut(s)	70, 588, 640, 679, 784, 823
BstMAI	GTCTC	2 cut(s)	426, 873
BstMBI	GATC	6 cut(s)	67, 585, 637, 676, 781, 820
BstMWI	GCNNNNNNNGC	2 cut(s)	518, 607
BstNSI	RCATGY	1 cut(s)	385
BstSCI	CCNGG	1 cut(s)	863
BstV1I	GCAGC	4 cut(s)	271, 597, 1044, 1072
BstV2I	GAAGAC	1 cut(s)	751
BstX2I	RGATCY	2 cut(s)	637, 820
BstXI	CCANNNNNNTGG	1 cut(s)	62
BstYI	RGATCY	2 cut(s)	637, 820
BsuI	GTATCC	2 cut(s)	885, 1054
BsuRI	GGCC	3 cut(s)	525, 863, 1005
BtgI	CCRYGG	1 cut(s)	1006
BtsCI	GGATG	3 cut(s)	125, 889, 988
BtsIMutI	CAGTG	4 cut(s)	264, 615, 808, 864
BveI	ACCTGC	1 cut(s)	526
Cac8I	GCNNGC	2 cut(s)	383, 523
Cfr13I	GGNCC	2 cut(s)	739, 884
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	3 cut(s)	59, 660, 1000
CspCI	CAANNNNNGTGG	2 cut(s)	122, 157
CviQI	GTAC	3 cut(s)	59, 660, 1000
DdeI	CTNAG	2 cut(s)	870, 974
DpnI	GATC	6 cut(s)	69, 587, 639, 678, 783, 822
DpnII	GATC	6 cut(s)	67, 585, 637, 676, 781, 820
EaeI	YGGCCR	3 cut(s)	523, 861, 1003
Eam1104I	CTCTTC	2 cut(s)	48, 317
EarI	CTCTTC	2 cut(s)	48, 317
Eco130I	CCWWGG	4 cut(s)	133, 632, 766, 1006
Eco24I	GRGCYC	1 cut(s)	705
Eco31I	GGTCTC	2 cut(s)	426, 873
Eco47I	GGWCC	2 cut(s)	739, 884
EcoT14I	CCWWGG	4 cut(s)	133, 632, 766, 1006
EcoT22I	ATGCAT	1 cut(s)	493
EcoT38I	GRGCYC	1 cut(s)	705
ErhI	CCWWGG	4 cut(s)	133, 632, 766, 1006
FalI	AAGNNNNNCTT	2 cut(s)	10, 42
FaqI	GGGAC	3 cut(s)	213, 356, 858
FauI	CCCGC	1 cut(s)	548
FblI	GTMKAC	1 cut(s)	726
Fnu4HI	GCNGC	4 cut(s)	260, 611, 1033, 1086
FokI	GGATG	3 cut(s)	132, 876, 975
FriOI	GRGCYC	1 cut(s)	705
Fsp4HI	GCNGC	4 cut(s)	260, 611, 1033, 1086
GluI	GCNGC	4 cut(s)	260, 611, 1033, 1086
GsuI	CTGGAG	2 cut(s)	450, 1071
HaeIII	GGCC	3 cut(s)	525, 863, 1005
HapII	CCGG	3 cut(s)	253, 864, 1058
HgaI	GACGC	1 cut(s)	215
Hin1I	GRCGYC	1 cut(s)	226
HinfI	GANTC	5 cut(s)	155, 344, 358, 542, 756
HpaII	CCGG	3 cut(s)	253, 864, 1058
HphI	GGTGA	3 cut(s)	439, 484, 790
Hpy166II	GTNNAC	4 cut(s)	207, 727, 739, 1000
Hpy188I	TCNGA	3 cut(s)	88, 151, 486
Hpy188III	TCNNGA	6 cut(s)	230, 304, 401, 583, 647, 1058
Hpy8I	GTNNAC	4 cut(s)	207, 727, 739, 1000
Hpy99I	CGWCG	1 cut(s)	236
HpyAV	CCTTC	7 cut(s)	110, 199, 460, 562, 615, 644, 811
HpyCH4III	ACNGT	1 cut(s)	659
HpyCH4IV	ACGT	1 cut(s)	954
HpyF10VI	GCNNNNNNNGC	2 cut(s)	518, 607
HpyF3I	CTNAG	2 cut(s)	870, 974
HpySE526I	ACGT	1 cut(s)	954
Hsp92I	GRCGYC	1 cut(s)	226
Kpn2I	TCCGGA	1 cut(s)	1057
Kzo9I	GATC	6 cut(s)	67, 585, 637, 676, 781, 820
LguI	GCTCTTC	1 cut(s)	317
LmnI	GCTCC	1 cut(s)	191
Lsp1109I	GCAGC	4 cut(s)	271, 597, 1044, 1072
LweI	GCATC	2 cut(s)	394, 997
MaeII	ACGT	1 cut(s)	954
MaeIII	GTNAC	4 cut(s)	37, 369, 955, 1013
MalI	GATC	6 cut(s)	69, 587, 639, 678, 783, 822
MbiI	CCGCTC	1 cut(s)	166
MboI	GATC	6 cut(s)	67, 585, 637, 676, 781, 820
MboII	GAAGA	6 cut(s)	35, 334, 580, 751, 754, 787
MflI	RGATCY	2 cut(s)	637, 820
MhlI	GDGCHC	1 cut(s)	705
MluCI	AATT	5 cut(s)	7, 172, 236, 248, 573
MlyI	GAGTC	4 cut(s)	164, 338, 536, 765
MnlI	CCTC	3 cut(s)	132, 311, 835
Mph1103I	ATGCAT	1 cut(s)	493
MroI	TCCGGA	1 cut(s)	1057
MroXI	GAANNNNTTC	1 cut(s)	326
MseI	TTAA	3 cut(s)	278, 468, 534
MslI	CAYNNNNRTG	5 cut(s)	54, 60, 181, 380, 734
MspA1I	CMGCKG	1 cut(s)	395
MspCI	CTTAAG	1 cut(s)	533
MspI	CCGG	3 cut(s)	253, 864, 1058
MspR9I	CCNGG	1 cut(s)	865
Mva1269I	GAATGC	3 cut(s)	82, 493, 922
MwoI	GCNNNNNNNGC	2 cut(s)	518, 607
NciI	CCSGG	1 cut(s)	865
NcoI	CCATGG	1 cut(s)	1006
NdeII	GATC	6 cut(s)	67, 585, 637, 676, 781, 820
NlaIV	GGNNCC	1 cut(s)	822
NmeAIII	GCCGAG	1 cut(s)	551
NmuCI	GTSAC	4 cut(s)	37, 369, 955, 1013
NsiI	ATGCAT	1 cut(s)	493
NspI	RCATGY	1 cut(s)	385
OliI	CACNNNNGTG	1 cut(s)	734
PaeI	GCATGC	1 cut(s)	385
PaqCI	CACCTGC	1 cut(s)	526
PciSI	GCTCTTC	1 cut(s)	317
PcsI	WCGNNNNNNNCGW	1 cut(s)	228
PctI	GAATGC	3 cut(s)	82, 493, 922
PdmI	GAANNNNTTC	1 cut(s)	326
PfeI	GAWTC	1 cut(s)	358
PkrI	GCNGC	4 cut(s)	261, 612, 1034, 1087
PleI	GAGTC	4 cut(s)	163, 338, 536, 764
PpsI	GAGTC	4 cut(s)	163, 338, 536, 764
PspN4I	GGNNCC	1 cut(s)	822
PspPI	GGNCC	2 cut(s)	739, 884
PsuI	RGATCY	2 cut(s)	637, 820
PvuII	CAGCTG	1 cut(s)	395
RsaI	GTAC	3 cut(s)	60, 661, 1001
RsaNI	GTAC	3 cut(s)	59, 660, 1000
RseI	CAYNNNNRTG	5 cut(s)	54, 60, 181, 380, 734
SapI	GCTCTTC	1 cut(s)	317
SaqAI	TTAA	3 cut(s)	278, 468, 534
SatI	GCNGC	4 cut(s)	260, 611, 1033, 1086
Sau3AI	GATC	6 cut(s)	67, 585, 637, 676, 781, 820
Sau96I	GGNCC	2 cut(s)	739, 884
SchI	GAGTC	4 cut(s)	164, 338, 536, 765
ScrFI	CCNGG	1 cut(s)	865
SduI	GDGCHC	1 cut(s)	705
SfaNI	GCATC	2 cut(s)	394, 997
SinI	GGWCC	2 cut(s)	739, 884
SmiMI	CAYNNNNRTG	5 cut(s)	54, 60, 181, 380, 734
SmlI	CTYRAG	1 cut(s)	533
SmoI	CTYRAG	1 cut(s)	533
SphI	GCATGC	1 cut(s)	385
Sse9I	AATT	5 cut(s)	7, 172, 236, 248, 573
SsiI	CCGC	2 cut(s)	164, 555
StyD4I	CCNGG	1 cut(s)	863
StyI	CCWWGG	4 cut(s)	133, 632, 766, 1006
TaaI	ACNGT	1 cut(s)	659
TaiI	ACGT	1 cut(s)	957
TaqI	TCGA	3 cut(s)	501, 540, 937
TasI	AATT	5 cut(s)	7, 172, 236, 248, 573
TatI	WGTACW	1 cut(s)	58
TfiI	GAWTC	1 cut(s)	358
Tru1I	TTAA	3 cut(s)	278, 468, 534
Tru9I	TTAA	3 cut(s)	278, 468, 534
TscAI	CASTG	4 cut(s)	271, 622, 808, 864
TseFI	GTSAC	4 cut(s)	37, 369, 955, 1013
TseI	GCWGC	4 cut(s)	259, 610, 1032, 1085
Tsp45I	GTSAC	4 cut(s)	37, 369, 955, 1013
TspDTI	ATGAA	6 cut(s)	4, 129, 165, 319, 377, 1086
TspRI	CASTG	4 cut(s)	271, 622, 808, 864
Vha464I	CTTAAG	1 cut(s)	533
VpaK11BI	GGWCC	2 cut(s)	739, 884
XapI	RAATTY	2 cut(s)	236, 248
XceI	RCATGY	1 cut(s)	385
XmiI	GTMKAC	1 cut(s)	726
XmnI	GAANNNNTTC	1 cut(s)	326
Zsp2I	ATGCAT	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.