MD17G1230000.v1.1

Protein trichome birefringence-like 43

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
27804030 .. 27807724
3695 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1230000.v1.1.491

Sequence Viewer

Length: 1143 bp
ATGATATATGCATATATATGTCTTGTGAGTTGGACGACCAGCCTTCTAATATCCCTCTGTGTTTTCATGGCTTCTTTTGCAATTGGAGCTGCAGTATCACTGCTTGTATTTTCTCTTCTGCATCACCAAGTGCATGGAGGACTTGTAGGGAGCGTTATCAAAGGCTGCGATCTTTCTCACGGAAACTGGGTTTTTGATGATTCATATCCTCTTTATGCCGCGCCGACCTGCCCTTTCATTGAGACGGTATTTGATTGCGTAGGGAATGGCCGCCCGGACAAAAACTACCTCAAGTATAGATGGCAACCCTTTGCCTGCGGCTTACCAAGATTCGATGGAAGTACTTTCTTGTCGACGCATAGAGGGAGAAACATATTGTTTGTCGGGGACTCGTTGAGTTTGAACCAATGGCAGTCACTTACTTGTATGCTTTATACGGTTGTTCCAGGAACCAAATACACATTGGTCACGAAAGGAGGGCTCTCTACATTCACGTTCCTGGAATACAATCTGAAGGTGTCCTTCTCCCGCAATGCCTTCATTGTCGACATTGTAGGCACACCTGATGGCCTTGTCCTCAAACTCGACTCAATCTCACCCGAAAACGAGCAGCTGTGGCTGCAAAACGACGTATTGATCTTCGACTCGTGGCACTGGTGGCTTCACGTTGGAAGAAAGCAACCATGGGATTTGATTCAAGTGGGGAATCAAACTTACAAGGACATGGATCGCTTGGTTGCATATGAGAAGGCGTTGACCACTTGGGCTGGATGGGTTGACTCCAAAGTAGACCCCAACAAAACCAAGGTCTTCTTCCAAGGCGTTTCTCCAGATCATAGCAATGCAACAGAGTGGGGCGATCCTCAAGCAATTAACTGCAATGCACAAACAGAACCACTGCCAGGTCCAGACATTCCAGGAAAACCACATCCAGCAGAGCAAGTACTAGAGAAAGCGTTAAGTACCGCGTCAAAGCCGGTCCATTTGCTGAATATTACAGCTCTTTCGCAACTGCGAAAGGATGCGCACCCGTCGGTCTATGGCCTCGGCGGGCACAAGGGCATGGACTGCAGCCACTGGTGTTTAGCTGGAGTTCCTGATACTTGGAATGTGCTTCTTCATGCAGCTCTTACTCCAAATTAG

Protein Analysis

381

Amino Acids

42.2

Weight (kDa)

6.25

Isoelectric Point (pI)

30.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 55 - 106 8.5e-22 PMR5 N terminal Domain
PC-Esterase PF13839 108 - 375 3.5e-87 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1026
Acc36I ACCTGC 1 cut(s) 236
AccI GTMKAC 3 cut(s) 353, 546, 789
AccII CGCG 2 cut(s) 221, 968
AciI CCGC 6 cut(s) 219, 271, 318, 529, 966, 1050
AclWI GGATC 2 cut(s) 735, 854
AcoI YGGCCR 1 cut(s) 268
AcuI CTGAAG 1 cut(s) 533
AdeI CACNNNGTG 1 cut(s) 130
AfaI GTAC 3 cut(s) 343, 945, 964
AfiI CCNNNNNNNGG 1 cut(s) 902
AgsI TTSAA 2 cut(s) 403, 698
AjnI CCWGG 4 cut(s) 445, 498, 901, 916
AjuI GAANNNNNNNTTGG 2 cut(s) 797, 829
AluBI AGCT 5 cut(s) 89, 613, 1001, 1088, 1127
AluI AGCT 5 cut(s) 89, 613, 1001, 1088, 1127
Alw26I GTCTC 1 cut(s) 236
AlwI GGATC 2 cut(s) 735, 854
AlwNI CAGNNNCTG 1 cut(s) 1077
AoxI GGCC 3 cut(s) 268, 568, 1042
ApeKI GCWGC 6 cut(s) 89, 165, 610, 619, 1071, 1124
ArsI GACNNNNNNTTYG 2 cut(s) 792, 824
AspLEI GCGC 2 cut(s) 223, 1027
AspS9I GGNCC 2 cut(s) 905, 979
AsuC2I CCSGG 1 cut(s) 275
AsuHPI GGTGA 2 cut(s) 116, 588
AvaII GGWCC 2 cut(s) 905, 979
BaeGI GKGCMC 1 cut(s) 1056
BanII GRGCYC 1 cut(s) 483
BarI GAAGNNNNNNTAC 2 cut(s) 99, 131
BauI CACGAG 1 cut(s) 646
BbsI GAAGAC 1 cut(s) 802
BbvI GCAGC 6 cut(s) 76, 152, 606, 622, 1083, 1136
BccI CCATC 4 cut(s) 294, 329, 560, 765
BciT130I CCWGG 4 cut(s) 447, 500, 903, 918
BcnI CCSGG 1 cut(s) 275
BcoDI GTCTC 1 cut(s) 236
BfaI CTAG 1 cut(s) 947
BfmI CTRYAG 2 cut(s) 90, 1069
BfuAI ACCTGC 1 cut(s) 236
BisI GCNGC 9 cut(s) 90, 166, 219, 271, 319, 611, 620, 1072, 1125
BlsI GCNGC 9 cut(s) 91, 167, 220, 272, 320, 612, 621, 1073, 1126
BmcAI AGTACT 2 cut(s) 343, 945
Bme1390I CCNGG 5 cut(s) 275, 447, 500, 903, 918
Bme18I GGWCC 2 cut(s) 905, 979
BmgT120I GGNCC 2 cut(s) 905, 979
BmiI GGNNCC 1 cut(s) 451
BmrFI CCNGG 5 cut(s) 275, 447, 500, 903, 918
BmrI ACTGGG 1 cut(s) 196
BmsI GCATC 2 cut(s) 130, 1012
BmuI ACTGGG 1 cut(s) 196
BpiI GAAGAC 1 cut(s) 802
BpmI CTGGAG 2 cut(s) 813, 1110
BpuEI CTTGAG 2 cut(s) 275, 849
BpuMI CCSGG 1 cut(s) 275
BsaBI GATNNNNATC 1 cut(s) 204
BsaJI CCNNGG 4 cut(s) 683, 804, 817, 1045
BsaXI ACNNNNNCTCC 4 cut(s) 78, 108, 129, 159
Bsc4I CCNNNNNNNGG 1 cut(s) 902
Bse118I RCCGGY 1 cut(s) 976
Bse1I ACTGG 3 cut(s) 191, 659, 1082
Bse3DI GCAATG 3 cut(s) 538, 847, 886
Bse8I GATNNNNATC 1 cut(s) 204
BseBI CCWGG 4 cut(s) 447, 500, 903, 918
BseDI CCNNGG 4 cut(s) 683, 804, 817, 1045
BseGI GGATG 3 cut(s) 776, 928, 1027
BseJI GATNNNNATC 1 cut(s) 204
BseLI CCNNNNNNNGG 1 cut(s) 902
BseMI GCAATG 3 cut(s) 538, 847, 886
BseNI ACTGG 3 cut(s) 191, 659, 1082
BseSI GKGCMC 1 cut(s) 1056
BseXI GCAGC 6 cut(s) 76, 152, 606, 622, 1083, 1136
Bsh1236I CGCG 2 cut(s) 221, 968
BshFI GGCC 3 cut(s) 270, 570, 1044
BsiSI CCGG 2 cut(s) 275, 977
BslFI GGGAC 1 cut(s) 401
BslI CCNNNNNNNGG 1 cut(s) 902
BsmAI GTCTC 1 cut(s) 236
BsmBI CGTCTC 1 cut(s) 236
BsmFI GGGAC 1 cut(s) 401
BsnI GGCC 3 cut(s) 270, 570, 1044
Bsp1286I GDGCHC 2 cut(s) 483, 1056
Bsp143I GATC 5 cut(s) 169, 636, 727, 832, 859
Bsp19I CCATGG 1 cut(s) 683
BspACI CCGC 6 cut(s) 219, 271, 318, 529, 966, 1050
BspANI GGCC 3 cut(s) 270, 570, 1044
BspFNI CGCG 2 cut(s) 221, 968
BspLI GGNNCC 1 cut(s) 451
BspMAI CTGCAG 2 cut(s) 94, 1073
BspMI ACCTGC 1 cut(s) 236
BspPI GGATC 2 cut(s) 735, 854
BsrDI GCAATG 3 cut(s) 538, 847, 886
BsrFI RCCGGY 1 cut(s) 976
BsrI ACTGG 3 cut(s) 191, 659, 1082
BssAI RCCGGY 1 cut(s) 976
BssECI CCNNGG 4 cut(s) 683, 804, 817, 1045
BssMI GATC 5 cut(s) 169, 636, 727, 832, 859
BssSI CACGAG 1 cut(s) 646
BssT1I CCWWGG 3 cut(s) 683, 804, 817
Bst2BI CACGAG 1 cut(s) 646
Bst2UI CCWGG 4 cut(s) 447, 500, 903, 918
Bst4CI ACNGT 2 cut(s) 247, 439
Bst6I CTCTTC 1 cut(s) 120
BstAPI GCANNNNNTGC 1 cut(s) 1068
BstC8I GCNNGC 2 cut(s) 316, 1052
BstDSI CCRYGG 1 cut(s) 683
BstF5I GGATG 3 cut(s) 776, 928, 1027
BstFNI CGCG 2 cut(s) 221, 968
BstHHI GCGC 2 cut(s) 223, 1027
BstKTI GATC 5 cut(s) 172, 639, 730, 835, 862
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 5 cut(s) 169, 636, 727, 832, 859
BstMWI GCNNNNNNNGC 6 cut(s) 77, 86, 616, 619, 658, 1068
BstNI CCWGG 4 cut(s) 447, 500, 903, 918
BstSCI CCNGG 5 cut(s) 273, 445, 498, 901, 916
BstSFI CTRYAG 2 cut(s) 90, 1069
BstSLI GKGCMC 1 cut(s) 1056
BstUI CGCG 2 cut(s) 221, 968
BstV1I GCAGC 6 cut(s) 76, 152, 606, 622, 1083, 1136
BstV2I GAAGAC 1 cut(s) 802
BstXI CCANNNNNNTGG 1 cut(s) 134
BsuRI GGCC 3 cut(s) 270, 570, 1044
BtgI CCRYGG 1 cut(s) 683
BtsCI GGATG 3 cut(s) 776, 928, 1027
BtsI GCAGTG 2 cut(s) 98, 896
BtsIMutI CAGTG 4 cut(s) 98, 652, 896, 1075
BveI ACCTGC 1 cut(s) 236
Cac8I GCNNGC 2 cut(s) 316, 1052
CaiI CAGNNNCTG 1 cut(s) 1077
CfoI GCGC 2 cut(s) 223, 1027
Cfr10I RCCGGY 1 cut(s) 976
Cfr13I GGNCC 2 cut(s) 905, 979
CseI GACGC 2 cut(s) 364, 957
Csp6I GTAC 3 cut(s) 342, 944, 963
CviAII CATG 6 cut(s) 67, 134, 684, 724, 1063, 1121
CviQI GTAC 3 cut(s) 342, 944, 963
DpnI GATC 5 cut(s) 171, 638, 729, 834, 861
DpnII GATC 5 cut(s) 169, 636, 727, 832, 859
DraIII CACNNNGTG 1 cut(s) 130
EaeI YGGCCR 1 cut(s) 268
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco130I CCWWGG 3 cut(s) 683, 804, 817
Eco24I GRGCYC 1 cut(s) 483
Eco47I GGWCC 2 cut(s) 905, 979
Eco57I CTGAAG 1 cut(s) 533
EcoRII CCWGG 4 cut(s) 445, 498, 901, 916
EcoT14I CCWWGG 3 cut(s) 683, 804, 817
EcoT22I ATGCAT 1 cut(s) 13
EcoT38I GRGCYC 1 cut(s) 483
ErhI CCWWGG 3 cut(s) 683, 804, 817
Esp3I CGTCTC 1 cut(s) 236
FaeI CATG 6 cut(s) 70, 137, 687, 727, 1066, 1124
FalI AAGNNNNNCTT 4 cut(s) 506, 538, 797, 829
FaqI GGGAC 1 cut(s) 401
FatI CATG 6 cut(s) 66, 133, 683, 723, 1062, 1120
FauI CCCGC 2 cut(s) 536, 1043
FauNDI CATATG 1 cut(s) 742
FblI GTMKAC 3 cut(s) 353, 546, 789
Fnu4HI GCNGC 9 cut(s) 90, 166, 219, 271, 319, 611, 620, 1072, 1125
FokI GGATG 3 cut(s) 783, 915, 1034
FriOI GRGCYC 1 cut(s) 483
Fsp4HI GCNGC 9 cut(s) 90, 166, 219, 271, 319, 611, 620, 1072, 1125
FspAI RTGCGCAY 1 cut(s) 1026
FspBI CTAG 1 cut(s) 947
FspI TGCGCA 1 cut(s) 1026
GlaI GCGC 2 cut(s) 222, 1026
GluI GCNGC 9 cut(s) 90, 166, 219, 271, 319, 611, 620, 1072, 1125
GsuI CTGGAG 2 cut(s) 813, 1110
HaeIII GGCC 3 cut(s) 270, 570, 1044
HapII CCGG 2 cut(s) 275, 977
HgaI GACGC 2 cut(s) 364, 957
HhaI GCGC 2 cut(s) 223, 1027
Hin1II CATG 6 cut(s) 70, 137, 687, 727, 1066, 1124
Hin6I GCGC 2 cut(s) 221, 1025
HinP1I GCGC 2 cut(s) 221, 1025
HincII GTYRAC 4 cut(s) 354, 547, 756, 778
HindII GTYRAC 4 cut(s) 354, 547, 756, 778
HinfI GANTC 8 cut(s) 200, 330, 389, 587, 644, 694, 706, 779
HpaII CCGG 2 cut(s) 275, 977
HphI GGTGA 2 cut(s) 116, 588
Hpy166II GTNNAC 5 cut(s) 354, 547, 756, 778, 790
Hpy188I TCNGA 1 cut(s) 513
Hpy188III TCNNGA 4 cut(s) 469, 830, 908, 1097
Hpy8I GTNNAC 5 cut(s) 354, 547, 756, 778, 790
Hpy99I CGWCG 3 cut(s) 358, 632, 1036
HpyAV CCTTC 5 cut(s) 53, 508, 532, 547, 742
HpyCH4III ACNGT 2 cut(s) 247, 439
HpyCH4IV ACGT 3 cut(s) 494, 630, 666
HpyF10VI GCNNNNNNNGC 6 cut(s) 77, 86, 616, 619, 658, 1068
HpySE526I ACGT 3 cut(s) 494, 630, 666
Hsp92II CATG 6 cut(s) 70, 137, 687, 727, 1066, 1124
HspAI GCGC 2 cut(s) 221, 1025
Kzo9I GATC 5 cut(s) 169, 636, 727, 832, 859
LmnI GCTCC 2 cut(s) 86, 150
Lsp1109I GCAGC 6 cut(s) 76, 152, 606, 622, 1083, 1136
LweI GCATC 2 cut(s) 130, 1012
MaeI CTAG 1 cut(s) 947
MaeII ACGT 3 cut(s) 494, 630, 666
MaeIII GTNAC 2 cut(s) 414, 466
MalI GATC 5 cut(s) 171, 638, 729, 834, 861
MboI GATC 5 cut(s) 169, 636, 727, 832, 859
MboII GAAGA 6 cut(s) 107, 631, 684, 802, 805, 1109
MfeI CAATTG 1 cut(s) 81
MhlI GDGCHC 2 cut(s) 483, 1056
MluCI AATT 3 cut(s) 81, 870, 1138
MlyI GAGTC 4 cut(s) 383, 581, 638, 773
MmeI TCCRAC 2 cut(s) 11, 649
MnlI CCTC 9 cut(s) 65, 131, 219, 299, 356, 470, 587, 873, 1055
Mph1103I ATGCAT 1 cut(s) 13
MseI TTAA 2 cut(s) 873, 959
MslI CAYNNNNRTG 2 cut(s) 16, 840
MspA1I CMGCKG 1 cut(s) 613
MspI CCGG 2 cut(s) 275, 977
MspR9I CCNGG 5 cut(s) 275, 447, 500, 903, 918
MunI CAATTG 1 cut(s) 81
MvaI CCWGG 4 cut(s) 447, 500, 903, 918
MvnI CGCG 2 cut(s) 221, 968
MwoI GCNNNNNNNGC 6 cut(s) 77, 86, 616, 619, 658, 1068
NciI CCSGG 1 cut(s) 275
NcoI CCATGG 1 cut(s) 683
NdeI CATATG 1 cut(s) 742
NdeII GATC 5 cut(s) 169, 636, 727, 832, 859
NlaIII CATG 6 cut(s) 70, 137, 687, 727, 1066, 1124
NlaIV GGNNCC 1 cut(s) 451
NmeAIII GCCGAG 1 cut(s) 1026
NmuCI GTSAC 2 cut(s) 414, 466
NsbI TGCGCA 1 cut(s) 1026
NsiI ATGCAT 1 cut(s) 13
PfeI GAWTC 4 cut(s) 200, 330, 694, 706
PfoI TCCNGGA 3 cut(s) 445, 498, 916
PkrI GCNGC 9 cut(s) 91, 167, 220, 272, 320, 612, 621, 1073, 1126
PleI GAGTC 4 cut(s) 383, 581, 638, 773
PpsI GAGTC 4 cut(s) 383, 581, 638, 773
Psp6I CCWGG 4 cut(s) 445, 498, 901, 916
PspGI CCWGG 4 cut(s) 445, 498, 901, 916
PspN4I GGNNCC 1 cut(s) 451
PspPI GGNCC 2 cut(s) 905, 979
PstI CTGCAG 2 cut(s) 94, 1073
PstNI CAGNNNCTG 1 cut(s) 1077
PvuII CAGCTG 1 cut(s) 613
RsaI GTAC 3 cut(s) 343, 945, 964
RsaNI GTAC 3 cut(s) 342, 944, 963
RseI CAYNNNNRTG 2 cut(s) 16, 840
SalI GTCGAC 2 cut(s) 352, 545
SaqAI TTAA 2 cut(s) 873, 959
SatI GCNGC 9 cut(s) 90, 166, 219, 271, 319, 611, 620, 1072, 1125
Sau3AI GATC 5 cut(s) 169, 636, 727, 832, 859
Sau96I GGNCC 2 cut(s) 905, 979
ScaI AGTACT 2 cut(s) 343, 945
SchI GAGTC 4 cut(s) 383, 581, 638, 773
ScrFI CCNGG 5 cut(s) 275, 447, 500, 903, 918
SduI GDGCHC 2 cut(s) 483, 1056
SfaNI GCATC 2 cut(s) 130, 1012
SfcI CTRYAG 2 cut(s) 90, 1069
SinI GGWCC 2 cut(s) 905, 979
SmiMI CAYNNNNRTG 2 cut(s) 16, 840
SmlI CTYRAG 2 cut(s) 290, 864
SmoI CTYRAG 2 cut(s) 290, 864
Sse9I AATT 3 cut(s) 81, 870, 1138
SsiI CCGC 6 cut(s) 219, 271, 318, 529, 966, 1050
SspI AATATT 1 cut(s) 994
SspMI CTAG 1 cut(s) 947
StyD4I CCNGG 5 cut(s) 273, 445, 498, 901, 916
StyI CCWWGG 3 cut(s) 683, 804, 817
TaaI ACNGT 2 cut(s) 247, 439
TaiI ACGT 3 cut(s) 497, 633, 669
TaqI TCGA 5 cut(s) 333, 353, 546, 585, 642
TaqII GACCGA 1 cut(s) 1024
TasI AATT 3 cut(s) 81, 870, 1138
TatI WGTACW 2 cut(s) 341, 943
TauI GCSGC 3 cut(s) 221, 273, 321
TfiI GAWTC 4 cut(s) 200, 330, 694, 706
Tru1I TTAA 2 cut(s) 873, 959
Tru9I TTAA 2 cut(s) 873, 959
TscAI CASTG 4 cut(s) 105, 659, 903, 1082
TseFI GTSAC 2 cut(s) 414, 466
TseI GCWGC 6 cut(s) 89, 165, 610, 619, 1071, 1124
Tsp45I GTSAC 2 cut(s) 414, 466
TspDTI ATGAA 5 cut(s) 55, 192, 226, 529, 1109
TspGWI ACGGA 1 cut(s) 195
TspRI CASTG 4 cut(s) 105, 659, 903, 1082
VpaK11BI GGWCC 2 cut(s) 905, 979
XcmI CCANNNNNNNNNTGG 1 cut(s) 460
XmiI GTMKAC 3 cut(s) 353, 546, 789
XspI CTAG 1 cut(s) 947
ZrmI AGTACT 2 cut(s) 343, 945
Zsp2I ATGCAT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.